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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016714 ID=TCONS_00016714|Name=TCONS_00016714|organism=Clytia hemisphaerica|type=transcript|length=1541bp
ttttagattaaccaataaaaattcaaagaaattaaaaataaaggAAGTTA
CTCTATGATCAATAATGTCCAGTGACGAGCGTTTAACGTTTTTACCAAGC
GGAGTTGACGATGTTAAACCAATTGAACTAGATCACACCTACACCTTAGG
TGATGTGCCTGGATACATGCAAACAATCATGCCTCAAGGATTTGACGCCA
GCGGCACTCGTTATCTGTTCTACCAAGATCGTCATTTTGCTAAGAAGGCT
AAATGTGAGTGTTGTGAGGATTTGCTTGAAAATGAGATCAAGATCTATGT
CATTTCTTATAACAAGGCTCTAATGGCGTTGGAGAAAAATGTGTTGAAAA
TGTTCTCTCGTTCTTTAATGGATGATTCTAGACGGATGATTGAGCTTGAT
ACAGTTAACGGAAATTTGGTTCATGCTACAATAACTTGTATATCTAAAGA
GAAAGAGGAGATCCCTCTGACTATTGACTCTGACAACTCCAAAGAGGATG
AGGAAGATGATGATGAAACTCCTGACGAATTGCAAATCGACCTTTATTAC
TTCCACATAATGGAACACTTAAATGTTAAAGGTACCAAAGTTTTAGTCGA
AGATCGTCAAGAACCAGATCTGACTTTGAAACATGATGGTGAAGAATATA
CTGATGTCAAACTGAAATATAATTATCGATTTGGTGATGAGACGGTTTTA
CTCGTCATTGCGTATAATCGTGACGAGGACGAAAACTACAAACCTATATT
TGATACTGAAATTTGTATTGATATAGTGCACACAGAGAAAGGGAAGATAT
GGCATTCGGAAAGAGTGAAGCTTGATCTGTCGATGACCAAAATGGAGGAT
CATGGAATTCCGGAAATCGAACTAACAAGGGACCGTATTTATGTTTGCGA
TGGTAAGCCAAGATTTGATATTTTACCAAATGTCTACGAGTTTGATTTGA
AAGGAAATCTAATGTACTCCTATGAAATCGCTCCTGATAGCTTTGATGCG
GCAGCTCTTCAGCGCCTGGATGACCACTCGATGTCGATCGTTTTGACGTC
TTATCTTGGTGAAGTTCGTCAGTTGAAGCTGAATGAAGGCGATACTATTG
TATTAAAAGATGTTGGAAAATATGTCAGCAACCTACCTGGCTTACGGAAA
CATCAAGAACGTGACCAATATAGTCATGATCAGCATTCGGAATTAATCGA
GAAGCTTGGTAGATTATTTCTCCGCTTGAGTGGCACATTTAAAGACAGTG
GTGGGATTAAATACTTAGATGTTGATAACAAACGAATTTCGAATGATATA
GATGTTGGGACGCAGGAACATTGGTGTCGGCAAATTACCTTGAATCAGAA
TGCCGAAGAAGTAGGGCTTTTCTGGGAAACCGGTAAAGCTATCTTTGTTT
ATATGGAGGGCTATGAAGATAAAGTTTTATCTTTCCATGTTCAGCGTTTA
AAATATCGCGGTGGTGATAATGATATAAATGCTGATAATGATAACACTGG
AAGCACTTGAAGAACATTTGAATCATTTACAGTATGTATAT Run BLAST on NCBI protein sequence of TCONS_00016714-protein >TCONS_00016714-protein ID=TCONS_00016714-protein|Name=TCONS_00016714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
MSSDERLTFLPSGVDDVKPIELDHTYTLGDVPGYMQTIMPQGFDASGTRY
LFYQDRHFAKKAKCECCEDLLENEIKIYVISYNKALMALEKNVLKMFSRS
LMDDSRRMIELDTVNGNLVHATITCISKEKEEIPLTIDSDNSKEDEEDDD
ETPDELQIDLYYFHIMEHLNVKGTKVLVEDRQEPDLTLKHDGEEYTDVKL
KYNYRFGDETVLLVIAYNRDEDENYKPIFDTEICIDIVHTEKGKIWHSER
VKLDLSMTKMEDHGIPEIELTRDRIYVCDGKPRFDILPNVYEFDLKGNLM
YSYEIAPDSFDAAALQRLDDHSMSIVLTSYLGEVRQLKLNEGDTIVLKDV
GKYVSNLPGLRKHQERDQYSHDQHSELIEKLGRLFLRLSGTFKDSGGIKY
LDVDNKRISNDIDVGTQEHWCRQITLNQNAEEVGLFWETGKAIFVYMEGY
EDKVLSFHVQRLKYRGGDNDINADNDNTGST Run BLAST on NCBI transcript from alignment at sc0000248:119023..121607+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016714 ID=TCONS_00016714|Name=TCONS_00016714|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at sc0000248:119023..121607+ (Clytia hemisphaerica)
ttttagattaaccaataaaaattcaaagaaattaaaaataaaggAAGTTA
CTCTATGATCAATAATGTCCAGTGACGAGCGTTTAACGTTTTTACCAAGC
GGAGTTGACGATGTTAAACCAATTGAACTAGATCACACCTACACCTTAGG
TGATGTGCCTGGATACATGCAAACAATCATGCCTCAAGGATTTGACGCCA
GCGGCACTCGTTATCTGTTCTACCAAGATCGTCATTTTGCTAAGAAGGCT
AAATGTGAGTGTTGTGAGGATTTGCTTGAAAATGAGATCAAGATCTATGT
CATTTCTTATAACAAGGCTCTAATGGCGTTGGAGAAAAATGTGTTGAAAA
TGTTCTCTCGTTCTTTAATGGATGATTCTAGACGGATGATTGAGCTTGAT
ACAGTTAACGGAAATTTGGTTCATGCTACAATAACTTGTATATCTAAAGA
GAAAGAGGAGATCCCTCTGACTATTGACTCTGACAACTCCAAAGAGGATG
AGGAAGATGATGATGAAACTCCTGACGAATTGCAAATCGACCTTTATTAC
TTCCACATAATGGAACACTTAAATGTTAAAGGTACCAAAGTTTTAGTCGA
AGATCGTCAAGAACCAGATCTGACTTTGAAACATGATGGTGAAGAATATA
CTGATGTCAAACTGAAATATAATTATCGATTTGGTGATGAGACGGTTTTA
CTCGTCATTGCGTATAATCGTGACGAGGACGAAAACTACAAACCTATATT
TGATACTGAAATTTGTATTGATATAGTGCACACAGAGAAAGGGAAGATAT
GGCATTCGGAAAGAGTGAAGCTTGATCTGTCGATGACCAAAATGGAGGAT
CATGGAATTCCGGAAATCGAACTAACAAGGGACCGTATTTATGTTTGCGA
TGGTAAGCCAAGATTTGATATTTTACCAAATGTCTACGAGTTTGATTTGA
AAGGAAATCTAATGTACTCCTATGAAATCGCTCCTGATAGCTTTGATGCG
GCAGCTCTTCAGCGCCTGGATGACCACTCGATGTCGATCGTTTTGACGTC
TTATCTTGGTGAAGTTCGTCAGTTGAAGCTGAATGAAGGCGATACTATTG
TATTAAAAGATGTTGGAAAATATGTCAGCAACCTACCTGGCTTACGGAAA
CATCAAGAACGTGACCAATATAGTCATGATCAGCATTCGGAATTAATCGA
GAAGCTTGGTAGATTATTTCTCCGCTTGAGTGGCACATTTAAAGGTATGC
TTTATTTGTATCCTTATTACCTggtatttcgctattttttgtaagaattt
tgAAGCTAAGATTGGCATTTAAGGAGGAAAATCCATTTTCAATGTTTGTA
AGTGAAGATAAAAGCTTTTTGTTTTTGGTTATTTGGCACTTTTAAGAAAT
ACATAGTGGTGAAATAGTTATCATTATCTTAGGAGATTATCACtgtgaaa
ataatttcaaagaatAATTGTTCGATCAAAAGAGACAGCCCAGATCAAGA
TTACTGCGGTAGActttaaaaatatacaaaaacaaacagaNCCTACCTGG
CTTACGGAAACATCAAGAACGTGACCAATATAGTCAGGATCAGCATTCGG
AAttaattgagaaacttggtAGATTATTTCTCCGCTTGTGTGGCACATTT
AAAGGTATGCTTTATTTGTATCCTTATTACCTGGTATTTCTCCATTTTTT
GGCATTTAAGGAGGAAAATCTATATTTTGAATGTTTGTAAATGAAGATAA
AAGCTTTGTTTTTGGTTATTTGGAACTTCTAAGAAATAGATAGTAGTGAA
ATAGTTATCTTTATATTAGGAGATTATAACtgtgaaaataatttaaaaga
aTAATTGTTCGATCAAAAGAAACAGCCCAAAGATCTCTGGTAGAGACTAT
AAAGGCCAACCAAATAGACATCTAAAGCCAGATCATTTGAATACCTtagg
ggaagaaattttgacggaaagaaattttggcaaatttggtgaaTTACCTA
AAaatttcgccaaattcgccaataTTTCTCtcagccaaatttaaatttat
aggtcattcgcaaaaataaattctcgccaaatttaattttctttcaattt
agtctCTATTTCTCAAAAACccttcccccctcttttttcagctaaaataa
tgcttgccaaaatttcttctcttaattaaggtatttcaatttatttcacA
GTGATATCTTTAAGAAGTCAGAATTTGCTGTGTCCTATGTATGCCCAATT
AATTCAAATATTAAcatctatttttctattttttgtagACAGTGGTGGGA
TTAAATACTTAGATGTTGATAACAAACGAATTTCGAATGATATAGATGTT
GGGACGCAGGAACATTGGTGTCGGCAAATTACCTTGAATCAGAATGCCGA
AGAAGTAGGGCTTTTCTGGGAAACCGGTAAAGCTATCTTTGTTTATATGG
AGGGCTATGAAGATAAAGTTTTATCTTTCCATGTTCAGCGTTTAAAATAT
CGCGGTGGTGATAATGATATAAATGCTGATAATGATAACACTGGAAGCAC
TTGAAGAACATTTGAATCATTTACAGTATGTATAT Coding sequence (CDS) from alignment at sc0000248:119023..121607+ >TCONS_00016714 ID=TCONS_00016714|Name=TCONS_00016714|organism=Clytia hemisphaerica|type=CDS|length=2892bp|location=Sequence derived from alignment at sc0000248:119023..121607+ (Clytia hemisphaerica)
ATGTCCAGTGACGAGCGTTTAACGTTTTTACCAAGCGGAGTTGACGATGT
TAAACCAATTGAACTAGATCACACCTACACCTTAGGTGATGTGCCTGGAT
ACATGCAAACAATCATGCCTCAAGGATTTGACGCCAGCGGCACTCGTTAT
CTGTTCTACCAAGATCGTCATTTTGCTAAGAAGGCTAAATGTGAGTGTTG
TGAGGATTTGCTTGAAAATGAGATCAAGATCTATGTCATTTCTTATAACA
AGGCTCTAATGGCGTTGGAGAAAAATGTGTTGAAAATGTTCTCTCGTTCT
TTAATGGATGATTCTAGACGGATGATTGAGCTTGATACAGTTAACGGAAA
TTTGGTTCATGCTACAATAACTTGTATATCTAAAGAGAAAGAGGAGATCC
CTCTGACTATTGACTCTGACAACTCCAAAGAGGATGAGGAAGATGATGAT
GAAACTCCTGACGAATTGCAAATCGACCTTTATTACTTCCACATAATGGA
ACACTTAAATGTTAAAGGTACCAAAGTTTTAGTCGAAGATCGTCAAGAAC
CAGATCTGACTTTGAAACATGATGGTGAAGAATATACTGATGTCAAACTG
AAATATAATTATCGATTTGGTGATGAGACGGTTTTACTCGTCATTGCGTA
TAATCGTGACGAGGACGAAAACTACAAACCTATATTTGATACTGAAATTT
GTATTGATATAGTGCACACAGAGAAAGGGAAGATATGGCATTCGGAAAGA
GTGAAGCTTGATCTGTCGATGACCAAAATGGAGGATCATGGAATTCCGGA
AATCGAACTAACAAGGGACCGTATTTATGTTTGCGATGGTAAGCCAAGAT
TTGATATTTTACCAAATGTCTACGAGTTTGATTTGAAAGGAAATCTAATG
TACTCCTATGAAATCGCTCCTGATAGCTTTGATGCGGCAGCTCTTCAGCG
CCTGGATGACCACTCGATGTCGATCGTTTTGACGTCTTATCTTGGTGAAG
TTCGTCAGTTGAAGCTGAATGAAGGCGATACTATTGTATTAAAAGATGTT
GGAAAATATGTCAGCAACCTACCTGGCTTACGGAAACATCAAGAACGTGA
CCAATATAGTCATGATCAGCATTCGGAATTAATCGAGAAGCTTGGTAGAT
TATTTCTCCGCTTGAGTGGCACATTTAAAGACAGTGGTGGGATTAAATAC
TTAGATGTTGATAACAAACGAATTTCGAATGATATAGATGTTGGGACGCA
GGAACATTGGTGTCGGCAAATTACCTTGAATCAGAATGCCGAAGAAGTAG
GGCTTTTCTGGGAAACCGGTAAAGCTATCTTTGTTTATATGGAGGGCTAT
GAAGATAAAGTTTTATCTTTCCATGTTCAGCGTTTAAAATATCGCGGTGG
TGATAATGATATAAATGCTGATAATGATAACACTGGAAGCACTTGAATGT
CCAGTGACGAGCGTTTAACGTTTTTACCAAGCGGAGTTGACGATGTTAAA
CCAATTGAACTAGATCACACCTACACCTTAGGTGATGTGCCTGGATACAT
GCAAACAATCATGCCTCAAGGATTTGACGCCAGCGGCACTCGTTATCTGT
TCTACCAAGATCGTCATTTTGCTAAGAAGGCTAAATGTGAGTGTTGTGAG
GATTTGCTTGAAAATGAGATCAAGATCTATGTCATTTCTTATAACAAGGC
TCTAATGGCGTTGGAGAAAAATGTGTTGAAAATGTTCTCTCGTTCTTTAA
TGGATGATTCTAGACGGATGATTGAGCTTGATACAGTTAACGGAAATTTG
GTTCATGCTACAATAACTTGTATATCTAAAGAGAAAGAGGAGATCCCTCT
GACTATTGACTCTGACAACTCCAAAGAGGATGAGGAAGATGATGATGAAA
CTCCTGACGAATTGCAAATCGACCTTTATTACTTCCACATAATGGAACAC
TTAAATGTTAAAGGTACCAAAGTTTTAGTCGAAGATCGTCAAGAACCAGA
TCTGACTTTGAAACATGATGGTGAAGAATATACTGATGTCAAACTGAAAT
ATAATTATCGATTTGGTGATGAGACGGTTTTACTCGTCATTGCGTATAAT
CGTGACGAGGACGAAAACTACAAACCTATATTTGATACTGAAATTTGTAT
TGATATAGTGCACACAGAGAAAGGGAAGATATGGCATTCGGAAAGAGTGA
AGCTTGATCTGTCGATGACCAAAATGGAGGATCATGGAATTCCGGAAATC
GAACTAACAAGGGACCGTATTTATGTTTGCGATGGTAAGCCAAGATTTGA
TATTTTACCAAATGTCTACGAGTTTGATTTGAAAGGAAATCTAATGTACT
CCTATGAAATCGCTCCTGATAGCTTTGATGCGGCAGCTCTTCAGCGCCTG
GATGACCACTCGATGTCGATCGTTTTGACGTCTTATCTTGGTGAAGTTCG
TCAGTTGAAGCTGAATGAAGGCGATACTATTGTATTAAAAGATGTTGGAA
AATATGTCAGCAACCTACCTGGCTTACGGAAACATCAAGAACGTGACCAA
TATAGTCATGATCAGCATTCGGAATTAATCGAGAAGCTTGGTAGATTATT
TCTCCGCTTGAGTGGCACATTTAAAGACAGTGGTGGGATTAAATACTTAG
ATGTTGATAACAAACGAATTTCGAATGATATAGATGTTGGGACGCAGGAA
CATTGGTGTCGGCAAATTACCTTGAATCAGAATGCCGAAGAAGTAGGGCT
TTTCTGGGAAACCGGTAAAGCTATCTTTGTTTATATGGAGGGCTATGAAG
ATAAAGTTTTATCTTTCCATGTTCAGCGTTTAAAATATCGCGGTGGTGAT
AATGATATAAATGCTGATAATGATAACACTGGAAGCACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016714-exon-sc0000248-1491911889:119023..120266 | TCONS_00016714-exon-sc0000248-1491911889:119023..120266 | Clytia hemisphaerica | exon |
| TCONS_00016714-exon-sc0000248-1510915933:119023..120266 | TCONS_00016714-exon-sc0000248-1510915933:119023..120266 | Clytia hemisphaerica | exon |
| TCONS_00016714-exon-sc0000248-1575043694:119023..120266 | TCONS_00016714-exon-sc0000248-1575043694:119023..120266 | Clytia hemisphaerica | exon |
| TCONS_00016714-exon-sc0000248-1491911889:121311..121607 | TCONS_00016714-exon-sc0000248-1491911889:121311..121607 | Clytia hemisphaerica | exon |
| TCONS_00016714-exon-sc0000248-1510915933:121311..121607 | TCONS_00016714-exon-sc0000248-1510915933:121311..121607 | Clytia hemisphaerica | exon |
| TCONS_00016714-exon-sc0000248-1575043694:121311..121607 | TCONS_00016714-exon-sc0000248-1575043694:121311..121607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:119023..121607 + |
Blast
The following BLAST results are available for this feature:
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