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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016708 ID=TCONS_00016708|Name=TCONS_00016708|organism=Clytia hemisphaerica|type=transcript|length=800bp
tttaaatttcatacATTAGACAAATAATCTTCGATTTTTTTGTGGTTTAT
AGTGACATGGTTACGCCAagcaagaaaagaaaaatcaatggCTTCAAGTT
ACACCAACTCACTGATACCAAAAAGAAGCGTTTAATATTAAAAGAAATCG
ATCAAAATCATCAGCAACCAGTTCAACAACAATCGACAACTGGAGAAGAG
AGTAGAGTCCCCTGTCACTCATCCATTCCAAACGTGCCAGTAAAATTGAT
GAACGAAGGAGTCAATGTTTGTTTCTTCAATGCAATTCTTCAAGGACTTG
TGTCGATAAAGGGGTTTCGTGATTACCTGGAgcaaagtgaaaatgaaaat
cacaTCACAAGAACACTAAAAGATTTGTACAACAAGATGAAAACACAAAC
AATCATCAAAACATCTGTGCACATTAGGAGCTTAAATCTTAGGAACTACA
CATTTGGAACTCAGTATGACGTTCCGGAGTGCCTTAATTATCTCCTTGAG
CACTGCTTCCCGGTACCTAGCATGTTTGATTTCACCATCAAGGAATCTAT
TGTATGTGAAAGAAGGCCTGGCATTTTTGATACAGGGTGTAACAAAAGAG
TTGAGAGAGATGAGAAACAGAACATTTTACAATTGATTCCGAATGATACC
AACGAACAGCAATCCGTGCAAGAGTTACTGGACATCCATTTCAACGCATA
CGGACTTCCACAAGAAGATTATTTTTGTGACATGCGATATGGTGGATGTG
GTAAACGTGGCCACTGTACCAAAGCGTCACTTCTTGCAGATGTTTCCGAA Run BLAST on NCBI protein sequence of TCONS_00016708-protein >TCONS_00016708-protein ID=TCONS_00016708-protein|Name=TCONS_00016708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MVTPSKKRKINGFKLHQLTDTKKKRLILKEIDQNHQQPVQQQSTTGEESR
VPCHSSIPNVPVKLMNEGVNVCFFNAILQGLVSIKGFRDYLEQSENENHI
TRTLKDLYNKMKTQTIIKTSVHIRSLNLRNYTFGTQYDVPECLNYLLEHC
FPVPSMFDFTIKESIVCERRPGIFDTGCNKRVERDEKQNILQLIPNDTNE
QQSVQELLDIHFNAYGLPQEDYFCDMRYGGCGKRGHCTKASLLADVSE Run BLAST on NCBI transcript from alignment at sc0000246:376361..377160 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016708 ID=TCONS_00016708|Name=TCONS_00016708|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at sc0000246:376361..377160 (Clytia hemisphaerica)
TTCGGAAACATCTGCAAGAAGTGACGCTTTGGTACAGTGGCCACGTTTAC
CACATCCACCATATCGCATGTCACAAAAATAATCTTCTTGTGGAAGTCCG
TATGCGTTGAAATGGATGTCCAGTAACTCTTGCACGGATTGCTGTTCGTT
GGTATCATTCGGAATCAATTGTAAAATGTTCTGTTTCTCATCTCTCTCAA
CTCTTTTGTTACACCCTGTATCAAAAATGCCAGGCCTTCTTTCACATACA
ATAGATTCCTTGATGGTGAAATCAAACATGCTAGGTACCGGGAAGCAGTG
CTCAAGGAGATAATTAAGGCACTCCGGAACGTCATACTGAGTTCCAAATG
TGTAGTTCCTAAGATTTAAGCTCCTAATGTGCACAGATGTTTTGATGATT
GTTTGTGTTTTCATCTTGTTGTACAAATCTTTTAGTGTTCTTGTGAtgtg
attttcattttcactttgcTCCAGGTAATCACGAAACCCCTTTATCGACA
CAAGTCCTTGAAGAATTGCATTGAAGAAACAAACATTGACTCCTTCGTTC
ATCAATTTTACTGGCACGTTTGGAATGGATGAGTGACAGGGGACTCTACT
CTCTTCTCCAGTTGTCGATTGTTGTTGAACTGGTTGCTGATGATTTTGAT
CGATTTCTTTTAATATTAAACGCTTCTTTTTGGTATCAGTGAGTTGGTGT
AACTTGAAGccattgatttttcttttcttgctTGGCGTAACCATGTCACT
ATAAACCACAAAAAAATCGAAGATTATTTGTCTAATgtatgaaatttaaa
Coding sequence (CDS) from alignment at sc0000246:376361..377160 >TCONS_00016708 ID=TCONS_00016708|Name=TCONS_00016708|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000246:376361..377160 (Clytia hemisphaerica)
TTCGGAAACATCTGCAAGAAGTGACGCTTTGGTACAGTGGCCACGTTTAC
CACATCCACCATATCGCATGTCACAAAAATAATCTTCTTGTGGAAGTCCG
TATGCGTTGAAATGGATGTCCAGTAACTCTTGCACGGATTGCTGTTCGTT
GGTATCATTCGGAATCAATTGTAAAATGTTCTGTTTCTCATCTCTCTCAA
CTCTTTTGTTACACCCTGTATCAAAAATGCCAGGCCTTCTTTCACATACA
ATAGATTCCTTGATGGTGAAATCAAACATGCTAGGTACCGGGAAGCAGTG
CTCAAGGAGATAATTAAGGCACTCCGGAACGTCATACTGAGTTCCAAATG
TGTAGTTCCTAAGATTTAAGCTCCTAATGTGCACAGATGTTTTGATGATT
GTTTGTGTTTTCATCTTGTTGTACAAATCTTTTAGTGTTCTTGTGAtgtg
attttcattttcactttgcTCCAGGTAATCACGAAACCCCTTTATCGACA
CAAGTCCTTGAAGAATTGCATTGAAGAAACAAACATTGACTCCTTCGTTC
ATCAATTTTACTGGCACGTTTGGAATGGATGAGTGACAGGGGACTCTACT
CTCTTCTCCAGTTGTCGATTGTTGTTGAACTGGTTGCTGATGATTTTGAT
CGATTTCTTTTAATATTAAACGCTTCTTTTTGGTATCAGTGAGTTGGTGT
AACTTGAAGccattgatttttcttttcttgctTGGCGTAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016708-exon-sc0000246-1491911889:376361..377160 | TCONS_00016708-exon-sc0000246-1491911889:376361..377160 | Clytia hemisphaerica | exon |
| TCONS_00016708-exon-sc0000246-1510915933:376361..377160 | TCONS_00016708-exon-sc0000246-1510915933:376361..377160 | Clytia hemisphaerica | exon |
| TCONS_00016708-exon-sc0000246-1575043694:376361..377160 | TCONS_00016708-exon-sc0000246-1575043694:376361..377160 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000246 | supercontig | sc0000246:376361..377160 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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