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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016706 ID=TCONS_00016706|Name=TCONS_00016706|organism=Clytia hemisphaerica|type=transcript|length=1058bp
TCTTGATCAGCAGATGAGGATTACCGACAAAGCTTACCAAGAATTGTTGG
ACCGCCTACGAACAGGTAAGCATTAAAAGAAGCCAAATTTTGcctaactt
ttatattttgcaTAAAATTCACCATAGATATCATTTAAAAAGAACTATTC
TTCAATAATTACTAATAACCGATAACACTTGGAATGTTTTGTCATACGAA
ATATTTGTTTCATGACCTTCTTTCTTCCGCggatgttttcttttttttag
ggAAATCTACACTCGAGGATTACATGGTGTTATCATCCAGGGTGATTGGA
TGCAATTCAAGCCCCGTTACTCCTGCCAAAGATCCAATTATTGTTCCTGG
CAATCAGCTAGTTCGAGAAATCAATAATCTTTTTATTGATGACTATGCAA
AATCAAATACAGTCTATGTTTCAAAGTCTGTCGATGTCACAAAAAAAGAG
CTAGACGAAAATGAGATATCCACATTAAAATCGCTACCAAGCACTAAAAC
TGATGGTCTTCTTGGTCAACTTCCATTGTATCAAGGAATGCCTGTCTTTC
TTACGAGAAATATATCAACTGAGCTTGGCTTGACAAACGGCGCCACAGGA
GTCATCAGGTCAATTCCAACTcccaaaaatcaaacaaattcTCACCATGC
TGGAGTTGTAGTTTTAAACGAACCATTACCTTATCTTGTTGTGGAGTTTA
ATCGCATCAATTTACATGGGCTAACTGGATTAGATAGAAATCATGTTCCA
GTCTTCCCTGCGCATGGATCGTTTACTATCAAACCGGGAGCGAAAAGTCT
CACAATCAAAAGGAATCACTTTCCGCTCGTCCCAGCCTTTGCTTGCACAG
CTCATAAAAGTCAAGGGCAAACTTTGAGCAGTATTGTCATTGACTTAATT
CCTCCAAAGGGGATGAAGAGGATCGATCTTAGTTTTGTCTATGTCCCTTT
AAGTAGGATTAGAAGATTATCTGATTTGACAATCCTTAGACCAttcaacc
aaaatattttgaatctcCCCATGGATAGCGACTGCAAAGCAATGATGGAA
GATTTTAA Run BLAST on NCBI protein sequence of TCONS_00016706-protein >TCONS_00016706-protein ID=TCONS_00016706-protein|Name=TCONS_00016706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MFCHTKYLFHDLLSSADVFFFLGKSTLEDYMVLSSRVIGCNSSPVTPAKD
PIIVPGNQLVREINNLFIDDYAKSNTVYVSKSVDVTKKELDENEISTLKS
LPSTKTDGLLGQLPLYQGMPVFLTRNISTELGLTNGATGVIRSIPTPKNQ
TNSHHAGVVVLNEPLPYLVVEFNRINLHGLTGLDRNHVPVFPAHGSFTIK
PGAKSLTIKRNHFPLVPAFACTAHKSQGQTLSSIVIDLIPPKGMKRIDLS
FVYVPLSRIRRLSDLTILRPFNQNILNLPMDSDCKAMMEDF Run BLAST on NCBI transcript from alignment at sc0000246:370550..371607 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016706 ID=TCONS_00016706|Name=TCONS_00016706|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0000246:370550..371607 (Clytia hemisphaerica)
TTAAAATCTTCCATCATTGCTTTGCAGTCGCTATCCATGGGgagattcaa
aatattttggttgaaTGGTCTAAGGATTGTCAAATCAGATAATCTTCTAA
TCCTACTTAAAGGGACATAGACAAAACTAAGATCGATCCTCTTCATCCCC
TTTGGAGGAATTAAGTCAATGACAATACTGCTCAAAGTTTGCCCTTGACT
TTTATGAGCTGTGCAAGCAAAGGCTGGGACGAGCGGAAAGTGATTCCTTT
TGATTGTGAGACTTTTCGCTCCCGGTTTGATAGTAAACGATCCATGCGCA
GGGAAGACTGGAACATGATTTCTATCTAATCCAGTTAGCCCATGTAAATT
GATGCGATTAAACTCCACAACAAGATAAGGTAATGGTTCGTTTAAAACTA
CAACTCCAGCATGGTGAgaatttgtttgatttttgggAGTTGGAATTGAC
CTGATGACTCCTGTGGCGCCGTTTGTCAAGCCAAGCTCAGTTGATATATT
TCTCGTAAGAAAGACAGGCATTCCTTGATACAATGGAAGTTGACCAAGAA
GACCATCAGTTTTAGTGCTTGGTAGCGATTTTAATGTGGATATCTCATTT
TCGTCTAGCTCTTTTTTTGTGACATCGACAGACTTTGAAACATAGACTGT
ATTTGATTTTGCATAGTCATCAATAAAAAGATTATTGATTTCTCGAACTA
GCTGATTGCCAGGAACAATAATTGGATCTTTGGCAGGAGTAACGGGGCTT
GAATTGCATCCAATCACCCTGGATGATAACACCATGTAATCCTCGAGTGT
AGATTTccctaaaaaaaagaaaacatccGCGGAAGAAAGAAGGTCATGAA
ACAAATATTTCGTATGACAAAACATTCCAAGTGTTATCGGTTATTAGTAA
TTATTGAAGAATAGTTCTTTTTAAATGATATCTATGGTGAATTTTAtgca
aaatataaaagttaggCAAAATTTGGCTTCTTTTAATGCTTACCTGTTCG
TAGGCGGTCCAACAATTCTTGGTAAGCTTTGTCGGTAATCCTCATCTGCT
GATCAAGA Coding sequence (CDS) from alignment at sc0000246:370550..371607 >TCONS_00016706 ID=TCONS_00016706|Name=TCONS_00016706|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at sc0000246:370550..371607 (Clytia hemisphaerica)
AAAATCTTCCATCATTGCTTTGCAGTCGCTATCCATGGGgagattcaaaa
tattttggttgaaTGGTCTAAGGATTGTCAAATCAGATAATCTTCTAATC
CTACTTAAAGGGACATAGACAAAACTAAGATCGATCCTCTTCATCCCCTT
TGGAGGAATTAAGTCAATGACAATACTGCTCAAAGTTTGCCCTTGACTTT
TATGAGCTGTGCAAGCAAAGGCTGGGACGAGCGGAAAGTGATTCCTTTTG
ATTGTGAGACTTTTCGCTCCCGGTTTGATAGTAAACGATCCATGCGCAGG
GAAGACTGGAACATGATTTCTATCTAATCCAGTTAGCCCATGTAAATTGA
TGCGATTAAACTCCACAACAAGATAAGGTAATGGTTCGTTTAAAACTACA
ACTCCAGCATGGTGAgaatttgtttgatttttgggAGTTGGAATTGACCT
GATGACTCCTGTGGCGCCGTTTGTCAAGCCAAGCTCAGTTGATATATTTC
TCGTAAGAAAGACAGGCATTCCTTGATACAATGGAAGTTGACCAAGAAGA
CCATCAGTTTTAGTGCTTGGTAGCGATTTTAATGTGGATATCTCATTTTC
GTCTAGCTCTTTTTTTGTGACATCGACAGACTTTGAAACATAGACTGTAT
TTGATTTTGCATAGTCATCAATAAAAAGATTATTGATTTCTCGAACTAGC
TGATTGCCAGGAACAATAATTGGATCTTTGGCAGGAGTAACGGGGCTTGA
ATTGCATCCAATCACCCTGGATGATAACACCATGTAATCCTCGAGTGTAG
ATTTccctaaaaaaaagaaaacatccGCGGAAGAAAGAAGGTCATGAAAC
AAATATTTCGTATGACAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016706-exon-sc0000246-1491911889:370550..371607 | TCONS_00016706-exon-sc0000246-1491911889:370550..371607 | Clytia hemisphaerica | exon |
| TCONS_00016706-exon-sc0000246-1510915933:370550..371607 | TCONS_00016706-exon-sc0000246-1510915933:370550..371607 | Clytia hemisphaerica | exon |
| TCONS_00016706-exon-sc0000246-1575043694:370550..371607 | TCONS_00016706-exon-sc0000246-1575043694:370550..371607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000246 | supercontig | sc0000246:370550..371607 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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