TCONS_00016666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016666
Unique NameTCONS_00016666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016666 ID=TCONS_00016666|Name=TCONS_00016666|organism=Clytia hemisphaerica|type=transcript|length=983bp
ATTTGAAGCGTTAATTTGCCTTATAAGGAAACACCTCTAAAAATAtaata
ctttcaatttttctcattCAATCAGGTTGTATGAATACACCAAAACTTGG
CTTGAGAGTGTGTCAAGACCACGAAGACACAACAGCAAGATTTAGTGATC
ATTAccagaaacaaaaacaaaacaatgctGCTATTGCCGATGATAAAGAT
GAAGTAGATGAAGAATCTTTAAACGAAGACAACGAGACCGCAACAACTGA
TGAAGACGGACTGAACGATAATGACTCTGATCCTGCTCAGATTACAacga
aaaaggagaaaaatggTATTTATCAAGGAGTGATCAGAATTTGCAACACG
AAGGAAACCAGAACATCAACACTTTACGAAGTTTTATGGCATACTGGCCA
AAAAACCTGGGTACGGGATGAGAAATTACCTCAACACCTAAGAAATGCCA
ATAACAAAATTGTTGTACAAGATGTGACGTCACTTGGTCAACCAAGGCAA
ATTTTGGGATTCACAAGAAATGACAACGGAGATAGTGTTGACCTACCCGT
cccagaaaaaaagGAAGAAACTCCAGATCCTTCAAGTTTAAAATGCGGAA
CGGATAAATCGAAACATATTGCCAAGAATAAGAAAACAGCAGGTGTTTTG
GTAATGGCGAAACCATGTGGTATCGTTGTCAACATAAAGGAGCTGTTCAA
TTGTGAATCCATATCTCAAGTTTATGGCCATTTGCACGACCTCTTAAGCC
AAGACGAATATCAATCAATCAATTGTATCGTATACGACGATGCTTGTCAT
CTTTTGAAGTATTCAAAAAATCCTGTCCGGAAGGATGACACTAACACCAG
CAAGCGTATTGCTACATTGGAAATGAAAATTGATCGATTCCACTATCGTA
ATCATGTGGATCCATGGTGTCGCAGAGTTTGTAATCCTAAAACCTCAGAT
CACTTAGCCGGAgTCAACACAGAAACATGCGAG
Run BLAST on NCBI

transcript from alignment at sc0000246:392675..395205+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016666 ID=TCONS_00016666|Name=TCONS_00016666|organism=Clytia hemisphaerica|type=transcript|length=2531bp|location=Sequence derived from alignment at sc0000246:392675..395205+ (Clytia hemisphaerica)
ATTTGAAGCGTTAATTTGCCTTATAAGGAAACACCTCTAAAAATAtaata
ctttcaatttttctcattCAATCAGGTTGTATGAATACACCAAAACTTGG
CTTGAGAGTGTGTCAAGACCACGAAGACACAACAGCAAGATTTAGTGATC
ATTAccagaaacaaaaacaaaacaatgctGCTATTGCCGATGATAAAGAT
GAAGTAGATGAAGAATCTTTAAACGAAGACAACGAGACCGCAACAACTGA
TGAAGACGGACTGAACGATAATGACTCTGATCCTGCTCAGATTACAacga
aaaaggagaaaaatggTATTTATCAAGGAGTGATCAGAATTTGCAACACG
AAGGAAACCAGAACATCAACACTTTACGAAGTAACAATCTATCATTTCGT
GAATTCCTACTTTCTTGATTATGAACAGCTCACATTATACAGTCAGCAAA
TTATAAGAATGATAAATAAAAAGGCACAATTTAACTTGTCAAGTAACTTG
TCAAATGAGTTTTATCATCAACGGTGCTTTTATTCGTTTTTAGGTTTTAT
GGCATACTGGCCAAAAAACCTGGGTACGGGATGAGAAATTACCTCAACAC
CTAAGAAATGCCAATAACAAAATTGTTGTACAAGATGTGACGTCACTTGG
TCAACCAAGGCAAATTTTGGGATTCACAAGAAATGACAACGGAGATAGTG
TTGACCTACCCGTcccagaaaaaaagtaaatttttgctttttcctTGCAG
CCTGTGACTGTAGCTCTTTACATTAATTCCaggtttataaaaaaaatatg
tgtgtgaTAATTGGCACAGAGGTCCCTCCTCCATCAGAATAAAGTGGAGA
CGATTGGAAAAGTTTTGAGCCATTTATTAATGACGTCACTTTTCAGTACA
AACTCTCTAAACATTATCctcaaaaagttcttaaaatgaaaacttttact
gcttcattttgaatattataGAGAACAGATGAATACAATGGGGCTTTTGA
ATATAGGGTTTTGATGTCTATATTTCGAGATGTTCGAAAACGGACTGTTT
TTGTTAAATCAGCACATTTTGCAGCATATTAAAAGTAACAGTCAAATTTC
TGTTTCTGGGGTTTCTAGTGGACAAGAAAATCACATCAACGTTACAAACC
TTCACacgaaaagattttttgaaatttaaaaaggttgGTTGCCCACTGTG
ggggtttggtacaggctaatcTTAAGTTTATCATGGAATGATTATGAAGT
CTGTGAATCAagtacaaaatttattttaggGAAGAAACTCCAGATCCTTC
AAGTTTAAAATGCGGAACGGATAAATCGAAACATATTGCCAAGAATAAGA
AAACAGCAGGtacaaagtgtttttttttatatattatctCCTATAATAGT
AGATCCTGATTGTTCAAGGCAATCGATATTAGGCTTACATAGAGGATCTG
GGAGTGACCTGAGACAAAAGTTGCATTCAGTTTTCTCACAATTAGTTTAA
AAGATCAATCAGCTTGAGGTAAACTCGTTTTCCAGCCAAATGACCTTcga
atcgaaaaaaattgcttttttaattttttttgcgctaatttttaaaacat
ttgtaGAGAAATGTATCATCCTTATATCCCTATAATAGCAAAGAGTTCTT
CGTACGTAAAGATTGATTTTTCAGGTGTTTTGGTAATGGCGAAACCATGT
GGTATCGTTGTCAACATAAAGGAGCTGTTCAATTGTGAATCCATATCTCA
AGTTTATGGCCATTTGCACGACCTCTTAAGCCAAGACGAATATCAATCAA
TCAGTAAGTAATTTGACGATCAGTTTAGTATCTGATTCTTAACAAGAACT
TAAATTATAAAAATGGCAGTCCGTTTAATACATTTAATACTCttgttaaa
aaaaacaaccttagAGAGATTTGATGAACGTTTTTTAGACTTAACAATAA
TTTTAAatctgaaattaaaaataattaataaagATGTTTTAAAAGCATAC
AACGCTTTCATTTTTTAACCATAGCGTTAGCATTCAGGCTACCCTCAATA
TGGTAACTGAATTGGACAGTAAAAATTTTAACTCATTTCTGTTTTTAGAT
TGTATCGTATACGACGATGCTTGTCATCTTTTGAAGTATTCAAAAAATCC
TGTCCGGAAGGATGACACTAACACCAGCAAGCGTATTGCTACATTGGAAA
TGAAAATTGATCGATTCCACTATCGTAATCATGTGGATCCATGGTGTCGC
AGAGTTTGTAATCCTAAAACCTCAGATCACTTAGCCGGAGTAAGTAATTA
TCTCTATTCCATTTCTATAATAGATTTTACAACGGAGCCATTCTCTGAgg
caaaatattttgttacCTATTCAAAGCTACCATATTTTCATGGTAAGGCC
CAGGATTATTCGGTTTGTTTAGATTATTTTCGACTATCTTCGTAACGTAT
ATAATACagataaaacataaaaatcatcGAGGGATAAAACtttcccttta
atttttttaggTCAACACAGAAACATGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009317XLOC_009317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016666-exon-sc0000246-1491911889:392675..393054TCONS_00016666-exon-sc0000246-1491911889:392675..393054Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:392675..393054TCONS_00016666-exon-sc0000246-1510915933:392675..393054Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:392675..393054TCONS_00016666-exon-sc0000246-1575043694:392675..393054Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1491911889:393218..393399TCONS_00016666-exon-sc0000246-1491911889:393218..393399Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:393218..393399TCONS_00016666-exon-sc0000246-1510915933:393218..393399Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:393218..393399TCONS_00016666-exon-sc0000246-1575043694:393218..393399Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1491911889:393954..394033TCONS_00016666-exon-sc0000246-1491911889:393954..394033Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:393954..394033TCONS_00016666-exon-sc0000246-1510915933:393954..394033Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:393954..394033TCONS_00016666-exon-sc0000246-1575043694:393954..394033Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1491911889:394349..394477TCONS_00016666-exon-sc0000246-1491911889:394349..394477Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:394349..394477TCONS_00016666-exon-sc0000246-1510915933:394349..394477Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:394349..394477TCONS_00016666-exon-sc0000246-1575043694:394349..394477Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1491911889:394773..394963TCONS_00016666-exon-sc0000246-1491911889:394773..394963Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:394773..394963TCONS_00016666-exon-sc0000246-1510915933:394773..394963Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:394773..394963TCONS_00016666-exon-sc0000246-1575043694:394773..394963Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1491911889:395185..395205TCONS_00016666-exon-sc0000246-1491911889:395185..395205Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1510915933:395185..395205TCONS_00016666-exon-sc0000246-1510915933:395185..395205Clytia hemisphaericaexon
TCONS_00016666-exon-sc0000246-1575043694:395185..395205TCONS_00016666-exon-sc0000246-1575043694:395185..395205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:392675..395205 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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