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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016651 ID=TCONS_00016651|Name=TCONS_00016651|organism=Clytia hemisphaerica|type=transcript|length=3466bpRun BLAST on NCBI protein sequence of TCONS_00016651-protein >TCONS_00016651-protein ID=TCONS_00016651-protein|Name=TCONS_00016651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp MKSSWICWCKQQQQPVPVEQSSTPPSTIEEHQPMMAQSSTSSASIASTASRun BLAST on NCBI transcript from alignment at sc0000246:265747..301367+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016651 ID=TCONS_00016651|Name=TCONS_00016651|organism=Clytia hemisphaerica|type=transcript|length=35621bp|location=Sequence derived from alignment at sc0000246:265747..301367+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000246:265747..301367+ >TCONS_00016651 ID=TCONS_00016651|Name=TCONS_00016651|organism=Clytia hemisphaerica|type=CDS|length=32304bp|location=Sequence derived from alignment at sc0000246:265747..301367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016651 vs. Swiss-Prot (Human)
Match: SEPT7 (Septin-7 OS=Homo sapiens GN=SEPT7 PE=1 SV=2) HSP 1 Score: 464.537 bits (1194), Expect = 1.514e-151 Identity = 251/394 (63.71%), Postives = 309/394 (78.43%), Query Frame = 2
Query: 1046 KKGLENYVGFANLPNQVFRKSVKKGFQFTLMVVGESGLGKSTLINSLFLTDIYTSTVYEDAAAKFGKTMTVNASTFELKEGGVRLQLTVVDTPGFGDNIDNTDCWNSVIQNIEAKFEDYLNAESRVNRTTVQDTRVHCCLYFIAPTGHGLKPLDVEFMKKLHNKVNIVPVIAKADTLTGDECNRFKQQILKEIEDHQINIYRFPPLSDDESENDLAA--LRRIPFAVVGSNTVLEVGGKKIRGRKYPWGIVEVENIEHCDFIALRNLLIRTHMQDLIDVTNDVHYENFRSERLSVLTGGG--NSITSAALNINPMEQIEREREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRKFDVTMKTLEQTKKELEDKRRKFEEERNQFDNSQ 2215
+K LE YVGFANLPNQV+RKSVK+GF+FTLMVVGESGLGKSTLINSLFLTD+Y S Y + + KT+ V S +KEGGV+L LT+VDTPGFGD +DN++CW VI I++KFEDYLNAESRVNR + D RV CCLYFIAP+GHGLKPLD+EFMK+LH KVNI+P+IAKADTLT +EC +FK+QI+KEI++H+I IY FP +DDE EN L R+P AVVGSNT++EV GK++RGR+YPWG+ EVEN EHCDF LRN+LIRTHMQDL DVTN+VHYEN+RS +L+ +T G N+ L +P+ Q+E ER + K+KKME EMEQVFEMKVKEK +KLKDSEAE R+ + K LE KELE+KRR+FE+E+ ++ Q
Sbjct: 24 QKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE-TDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQ 415 The following BLAST results are available for this feature:
BLAST of TCONS_00016651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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