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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016625 ID=TCONS_00016625|Name=TCONS_00016625|organism=Clytia hemisphaerica|type=transcript|length=1885bp
TTGAAATTATTGttgaaaaagaacaaaacattgaatGGACTAAACATTTA
ACTAATCttcctttgtttacaaaaagagAGATCGAATTACATCGACAAAA
GAGTGGCAAAAATGCACGATCAATCATCAAAACAAGAGATCAaggtttaa
aattcaaaaacgaaGGATATGTTATAAAAGATCAAATGTATACAAAGACT
TCCTCACTATTTTTCACTGTCAAAGCTGAATGTAGATCGAGCATGataca
agaaaaaaaacatttggaaGTTGTTCTAAATAGACTTAATGGAGAAGTTT
TCAGTGGAACGTGTGATTGCGCTGCAGGCAATTCTTCATATTGCAATCAT
ATAATGGCTCTGTTATTTGAACTAGCAGATTTTTCGTTACGTGAGATAAA
GACAGTTCCTGAGGATATTGCCTGCACAAGCGGGCCACGGCAATGGGGAA
CCCACCCCTCGGACAAGTTAAAGTATCCTGAGGCGGTCATGGACATTTCT
ATTCGAAAAGGAAACAGCAGAGGTGTTTCAAGCACTCTTTACAACCCACG
TATTAAcacaaaaattgacaatttgGTACATAGGGCTGCCAAAGCCCATT
TGAACCTTCTTCAACAGGACCAAAGAATAGGATATGCACACACTATGAAT
TTTTCATTGGGGGCAACACCAACAACTTTCGGTGATTTTTTTACAGGAAG
TCCTTTATCTTACCAACTGGGTGTATTTGAACAGAATTTTGTGGTCATCA
CAAACCTTGCTGGTATCAAGGCTTCAGTGGAAAGAAGAGAAGTAATTGAA
GATATTTTCTTACCCATTAATGTAATAAACACAAAAAGTCCTTACTTTCC
AAAAGACTGGGGCTTACTGAACTATTCAGAACTGTCAAcattatctaaaa
tatttccagAGACTGTAGAAAAATGTCGAGAAATTGAACAAAACACCATT
GGACAAGCTTTGAATGAGGCTTGGCATAAAGAGCGAGAAAATAGAATCAC
TTCAAGCAGCTGTCACAAAGTTTTAATTCGCAAGAGGAATTTTGAAACAT
TAGTAAACGACttttgtggcaaaaaaaagCCCATATCCAATTTCTTGAAA
GATTTGTTTGAATTTGGTCGAAAATTTGAGCCAGTGGCCagggaaaaatt
tgaaaaatacatgTCTTACACTTtgaaacgaaaaattgaaattcgagAAA
CTGGAATTGTAGTACAaccttttttgttttggcttGCAGCAAGTCCTGAT
GGCTTAATTATTGATCAAAACGAGGATTCTCCTGGACTTATTGAAATCAA
ATGCccaaaaacaaaaaggaattCAACCCCTGATATGTTATTAAAGGATG
AAACTTTCTGTGTTGGAAAAGACAAAAATGggaaaccttttttaaaaaag
caacataaatTTGGTTACTACAGTCAAATTCAATTGGCTATGGGGCTATC
CCAATTATCATATTGCTACTTTGTTGTCTACACCTATAAAGGATTGATGA
TAGTGAGAACAGAGTTTGATGAGCCATATTTTCGGAATCTTGTGACCAAG
CTAAATAAGTTCTACAaacaatatttgttaaaacatctttaataatattc
aatatttaGAGTGTACCATAAAAGACCTATtgtttgaatattttgttttg
agaagCTTTTTATGAGAAACTCTTCATTTTTACAGCATTTTACATATTGT
ATATTCTCTAGTTATTTTGCATAaacctttttctgattttcaaagAGAGT
ATTCAGTTCTAGACCTACCAAAACGAAAGCTctctaaaaagattttaaat
gttGCCTGCATCCACCTGATATGGTCTTGAgtaaaactttataaaaaaat
ctaagaGGAAGTCTTGAAAATAAATTCACTTCAAT Run BLAST on NCBI protein sequence of TCONS_00016625-protein >TCONS_00016625-protein ID=TCONS_00016625-protein|Name=TCONS_00016625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
EIIVEKEQNIEWTKHLTNLPLFTKREIELHRQKSGKNARSIIKTRDQGLK
FKNEGYVIKDQMYTKTSSLFFTVKAECRSSMIQEKKHLEVVLNRLNGEVF
SGTCDCAAGNSSYCNHIMALLFELADFSLREIKTVPEDIACTSGPRQWGT
HPSDKLKYPEAVMDISIRKGNSRGVSSTLYNPRINTKIDNLVHRAAKAHL
NLLQQDQRIGYAHTMNFSLGATPTTFGDFFTGSPLSYQLGVFEQNFVVIT
NLAGIKASVERREVIEDIFLPINVINTKSPYFPKDWGLLNYSELSTLSKI
FPETVEKCREIEQNTIGQALNEAWHKERENRITSSSCHKVLIRKRNFETL
VNDFCGKKKPISNFLKDLFEFGRKFEPVAREKFEKYMSYTLKRKIEIRET
GIVVQPFLFWLAASPDGLIIDQNEDSPGLIEIKCPKTKRNSTPDMLLKDE
TFCVGKDKNGKPFLKKQHKFGYYSQIQLAMGLSQLSYCYFVVYTYKGLMI
VRTEFDEPYFRNLVTKLNKFYKQYLLKHL Run BLAST on NCBI transcript from alignment at sc0000243:30943..32827 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016625 ID=TCONS_00016625|Name=TCONS_00016625|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0000243:30943..32827 (Clytia hemisphaerica)
ATTGAAGTGAATTTATTTTCAAGACTTCCtcttagatttttttataaagt
tttacTCAAGACCATATCAGGTGGATGCAGGCaacatttaaaatcttttt
agagAGCTTTCGTTTTGGTAGGTCTAGAACTGAATACTCTctttgaaaat
cagaaaaaggttTATGCAAAATAACTAGAGAATATACAATATGTAAAATG
CTGTAAAAATGAAGAGTTTCTCATAAAAAGcttctcaaaacaaaatattc
aaacaATAGGTCTTTTATGGTACACTCtaaatattgaatattattaaaga
tgttttaacaaatattgttTGTAGAACTTATTTAGCTTGGTCACAAGATT
CCGAAAATATGGCTCATCAAACTCTGTTCTCACTATCATCAATCCTTTAT
AGGTGTAGACAACAAAGTAGCAATATGATAATTGGGATAGCCCCATAGCC
AATTGAATTTGACTGTAGTAACCAAatttatgttgcttttttaaaaaagg
tttccCATTTTTGTCTTTTCCAACACAGAAAGTTTCATCCTTTAATAACA
TATCAGGGGTTGaattcctttttgtttttggGCATTTGATTTCAATAAGT
CCAGGAGAATCCTCGTTTTGATCAATAATTAAGCCATCAGGACTTGCTGC
aagccaaaacaaaaaaggtTGTACTACAATTCCAGTTTctcgaatttcaa
tttttcgtttcaAAGTGTAAGAcatgtatttttcaaatttttccctGGCC
ACTGGCTCAAATTTTCGACCAAATTCAAACAAATCTTTCAAGAAATTGGA
TATGGGcttttttttgccacaaaaGTCGTTTACTAATGTTTCAAAATTCC
TCTTGCGAATTAAAACTTTGTGACAGCTGCTTGAAGTGATTCTATTTTCT
CGCTCTTTATGCCAAGCCTCATTCAAAGCTTGTCCAATGGTGTTTTGTTC
AATTTCTCGACATTTTTCTACAGTCTctggaaatattttagataatgTTG
ACAGTTCTGAATAGTTCAGTAAGCCCCAGTCTTTTGGAAAGTAAGGACTT
TTTGTGTTTATTACATTAATGGGTAAGAAAATATCTTCAATTACTTCTCT
TCTTTCCACTGAAGCCTTGATACCAGCAAGGTTTGTGATGACCACAAAAT
TCTGTTCAAATACACCCAGTTGGTAAGATAAAGGACTTCCTGTAAAAAAA
TCACCGAAAGTTGTTGGTGTTGCCCCCAATGAAAAATTCATAGTGTGTGC
ATATCCTATTCTTTGGTCCTGTTGAAGAAGGTTCAAATGGGCTTTGGCAG
CCCTATGTACcaaattgtcaatttttgtgTTAATACGTGGGTTGTAAAGA
GTGCTTGAAACACCTCTGCTGTTTCCTTTTCGAATAGAAATGTCCATGAC
CGCCTCAGGATACTTTAACTTGTCCGAGGGGTGGGTTCCCCATTGCCGTG
GCCCGCTTGTGCAGGCAATATCCTCAGGAACTGTCTTTATCTCACGTAAC
GAAAAATCTGCTAGTTCAAATAACAGAGCCATTATATGATTGCAATATGA
AGAATTGCCTGCAGCGCAATCACACGTTCCACTGAAAACTTCTCCATTAA
GTCTATTTAGAACAACttccaaatgttttttttcttgtatCATGCTCGAT
CTACATTCAGCTTTGACAGTGAAAAATAGTGAGGAAGTCTTTGTATACAT
TTGATCTTTTATAACATATCCttcgtttttgaattttaaacctTGATCTC
TTGTTTTGATGATTGATCGTGCATTTTTGCCACTCTTTTGTCGATGTAAT
TCGATCTctctttttgtaaacaaaggaaGATTAGTTAAATGTTTAGTCCa
ttcaatgttttgttctttttcaaCAATAATTTCAA Coding sequence (CDS) from alignment at sc0000243:30943..32827 >TCONS_00016625 ID=TCONS_00016625|Name=TCONS_00016625|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0000243:30943..32827 (Clytia hemisphaerica)
ttaaagatgttttaacaaatattgttTGTAGAACTTATTTAGCTTGGTCA
CAAGATTCCGAAAATATGGCTCATCAAACTCTGTTCTCACTATCATCAAT
CCTTTATAGGTGTAGACAACAAAGTAGCAATATGATAATTGGGATAGCCC
CATAGCCAATTGAATTTGACTGTAGTAACCAAatttatgttgctttttta
aaaaaggtttccCATTTTTGTCTTTTCCAACACAGAAAGTTTCATCCTTT
AATAACATATCAGGGGTTGaattcctttttgtttttggGCATTTGATTTC
AATAAGTCCAGGAGAATCCTCGTTTTGATCAATAATTAAGCCATCAGGAC
TTGCTGCaagccaaaacaaaaaaggtTGTACTACAATTCCAGTTTctcga
atttcaatttttcgtttcaAAGTGTAAGAcatgtatttttcaaatttttc
cctGGCCACTGGCTCAAATTTTCGACCAAATTCAAACAAATCTTTCAAGA
AATTGGATATGGGcttttttttgccacaaaaGTCGTTTACTAATGTTTCA
AAATTCCTCTTGCGAATTAAAACTTTGTGACAGCTGCTTGAAGTGATTCT
ATTTTCTCGCTCTTTATGCCAAGCCTCATTCAAAGCTTGTCCAATGGTGT
TTTGTTCAATTTCTCGACATTTTTCTACAGTCTctggaaatattttagat
aatgTTGACAGTTCTGAATAGTTCAGTAAGCCCCAGTCTTTTGGAAAGTA
AGGACTTTTTGTGTTTATTACATTAATGGGTAAGAAAATATCTTCAATTA
CTTCTCTTCTTTCCACTGAAGCCTTGATACCAGCAAGGTTTGTGATGACC
ACAAAATTCTGTTCAAATACACCCAGTTGGTAAGATAAAGGACTTCCTGT
AAAAAAATCACCGAAAGTTGTTGGTGTTGCCCCCAATGAAAAATTCATAG
TGTGTGCATATCCTATTCTTTGGTCCTGTTGAAGAAGGTTCAAATGGGCT
TTGGCAGCCCTATGTACcaaattgtcaatttttgtgTTAATACGTGGGTT
GTAAAGAGTGCTTGAAACACCTCTGCTGTTTCCTTTTCGAATAGAAATGT
CCATGACCGCCTCAGGATACTTTAACTTGTCCGAGGGGTGGGTTCCCCAT
TGCCGTGGCCCGCTTGTGCAGGCAATATCCTCAGGAACTGTCTTTATCTC
ACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCATTATATGATTGC
AATATGAAGAATTGCCTGCAGCGCAATCACACGTTCCACTGAAAACTTCT
CCATTAAGTCTATTTAGAACAACttccaaatgttttttttcttgtatCAT
GCTCGATCTACATTCAGCTTTGACAGTGAAAAATAGTGAGGAAGTCTTTG
TATACATTTGATCTTTTATAACATATCCttcgtttttgaattttaaacct
TGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGCCACTCTTTTGTCG
ATGTAATTCGATCTctctttttgtaaacaaaggaaGATTAGTTAAATGTT
TAGTCCattcaatgttttgttctttttcaaCAATAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016625-exon-sc0000243-1491911889:30943..32827 | TCONS_00016625-exon-sc0000243-1491911889:30943..32827 | Clytia hemisphaerica | exon |
| TCONS_00016625-exon-sc0000243-1510915933:30943..32827 | TCONS_00016625-exon-sc0000243-1510915933:30943..32827 | Clytia hemisphaerica | exon |
| TCONS_00016625-exon-sc0000243-1575043694:30943..32827 | TCONS_00016625-exon-sc0000243-1575043694:30943..32827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:30943..32827 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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