TCONS_00016613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016613
Unique NameTCONS_00016613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016613 ID=TCONS_00016613|Name=TCONS_00016613|organism=Clytia hemisphaerica|type=transcript|length=2571bp
ATAAATATACATAGTTCATATTTCCAGTTTGCCAAAGTATgctaaaacaa
acaaatattgGAAGGGTTGAACAGGGTAGTTTTTATAAAGCGGGAGAAAT
CAAGATTAGTTGAGAAGAAGTCTTGCAATTCAAGCCGGGTTGTGCTCTCA
TATAGAGCTGATGATTACTGTAGATATGCATTCGGGTCGGCAACACTAGC
CTTTTTCCAGGTCGAAATTAAATAAGACCCCTGTTACACAGCGAGACCTT
AAATGAATCACTATTACTGACAGTTTCAATAATTGAGTCAAATATAATTA
ACCATAatcaatttgttgtttttagaatcgttaaaaaaaagaaaaatacg
tCAAAACCAATAAATCTACATATTCAACAAATAATCCAATACATTTTATG
GGAAAATAGTGCCGAACACGGAATCAAGCAGAATGTCCTCGTGTAATGGA
TCACGATATGGATTCCAAACCGTCGTTAACTGCGACGTTGGTGATCTATC
GGGAAGTTATCGATCCTTCGTAGAAGCGACATCCTTCATAACGTTTGCTA
TCGGGGTCGCCTTGAATACCGGAATCCTAACCGTTTCAATATCCATGTAC
CCCAACATCGATACATTCGATGCGCTATTGATGAATCTTACTTTTGGTGA
ACTTCTTAGCTCATTTGGATTATCTTTTATGTTATTTGTGGAGCTGACAA
CTAGTATTGCACCAATAGGAGATCACGGTTGCCAATTCTTAACATGGTTA
GATTTAGCTTCAGTTACTGTAACTGTTACAACAATCGTAGcattattttt
cgaattttacaAAGTTGTTTATAATAGTGCTCGTCCAAagaaaatgagac
cttataAATTATGGGCATTGATTTTATTGTTATGGATTATTGCGTCGANT
AATAGTGCTCGTCCAAagaaaatgagaccttataAATTATGGGCATTGAT
TTTATTGTTATGGATAATTGCGTCGATTCCAGGAATGCCGTACATGGCCA
CTGCAAAAATGGGCACTGATGGGTTTTGTCATATGGGACGCTGGTCAGAT
GATGCCGAAGTCCTATTCATCTGTGCTATGATTTTCTTTCAAGTTTTGAT
CCCGTTAGCTTTAATTGTTTACTTTTTCGTACGTTCGCTACTTGCTCTAC
GCGTGGATACCATGGGTGGGACAATTTTGAGTGAAGAAGCAAACCCAGGG
TCAGAAGCAACCTTACAACGTGGTATTTTAAAACGTAAATTTCGTATGAT
TGGTTACATGGCATTGATTTTCTACATGATTTTGATAACAGTTAGTATTA
TTGAACTTTCCTTGGCTTTGAACTTGAATGACATTGACTCGAATTTCGTA
AAACGTGCTCGAGTACGTGAATTAGCATCTTTGTTACTCTGCTTGAAAAC
GGTATTCATTCCATTGTTATTTGTTTTCAATGATAAGTTGATCAATCGTT
TCAAGAAGATTTGTTGTTTGTGGCGTCGTGACCCTGATATTTACAACAGT
TTAAGGTATGATGTGTACCAACAGACTGTATCCGAGGGACAAGGGGACGG
GTTCAATGATCGTTCAAATGAAGAAGAGATGGCACTGGCTAATGAAGAGT
TTGGTGAAACTGAAAGAGACGATGTTGCCATTTTAGATTCCAGCTAAGGA
GTATCATTAAATCAATGAATGAAAGGTTAAAGTGGGAAGAATCAAAATGA
GACTTCATTGTTCCAGCTAAGAAGTATCATTTTAAAtcaatgaataaaaa
attaaatgtgAAGAGAATCAAAAGGAGTTGCGCCATTAAAAATGGGACTT
CATTGTTCAGGAAGGAGCCAAGAATCCAAAGATAACGATTTTGCTTACTC
GAAGTGAAACTTTGTGGAACTTATTAGCTATAATAACATGTTATAAACTT
CATAGTTGCTATTGAAAGAACATTATTTCTGCAAGGGACAAAGATGATGA
TATTTTATGTcctgcaaaatattatgtttcTAACCTAGAAGAACTAATAT
GGACCAAGAATATTTATGACAATAAATGTATTGATTACAATAATAGTACA
TTGGACCCTAAATCACCAGAGAACTGCCAGAGTTAATTATCTTATGAATG
AACTTAGACTTATAATTATCTCACCCATAAAAGAAGaatatgatttttaa
tttttgacaatCAAAGCCCAATATACTGTATGAATGAAAGTGTTTCCGAA
TAAAAAATCATAGCAATtgtcagctttctaatgtaaaTTCTTTTGGTCCA
AATCTTGCAACCATTTCTTCCATCTATTGTCTACAATTTAAACCTTTTTA
AGTACTTTAGGTCTTACGTTCTTATATATTTATTCCTTTTTATAACATTC
TTTTTCTATatcaaccaaaaaaaaaaactttaaaaaaatatttaaatttt
aggaaaattttaatttatcaaaaaattgaatttaaaatccggacattttt
tggaaaaaataaagctTCTTTCAAAATGTATATCTTCCTCCCTCcgttta
caatttgttttcttttactcatgatatgcaccatagCAATGTCTCCGCGG
ACcaaagctgattggttgaaa
Run BLAST on NCBI

transcript from alignment at sc0000243:304380..307024-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016613 ID=TCONS_00016613|Name=TCONS_00016613|organism=Clytia hemisphaerica|type=transcript|length=2645bp|location=Sequence derived from alignment at sc0000243:304380..307024- (Clytia hemisphaerica)
ATAAATATACATAGTTCATATTTCCAGTTTGCCAAAGTATGCTAAAACAA
ACAAATATTGGAAGGGTTGAACAGGGTAGTTTTTATAAAGCGGGAGAAAT
CAAGATTAGTTGAGAAGAAGTCTTGCAATTCAAGCCGGGTTGTGCTCTCA
TATAGAGCTGATGATTACTGTAGATATGCATTCGGGTCGGCAACACTAGC
CTTTTTCCAGGTCGAAATTAAATAAGACCCCTGTTACACAGCGAGACCTT
AAATGAATCACTATTACTGACAGTTTCAATAATTGAGTCAAATATAATTA
ACCATAATCAATTTGTTGTTTTTAGAATCGTTAAAAAAAAGAAAAATACG
TCAAAACCAATAAATCTACATATTCAACAAATAATCCAATACATTTTATG
GGAAAATAGTGCCGAACACGGAATCAAGCAGAATGTCCTCGTGTAATGGA
TCACGATATGGATTCCAAACCGTCGTTAACTGCGACGTTGGTGATCTATC
GGGAAGTTATCGATCCTTCGTAGAAGCGACATCCTTCATAACGTTTGCTA
TCGGGGTCGCCTTGAATACCGGAATCCTAACCGTTTCAATATCCATGTAC
CCCAACATCGATACATTCGATGCGCTATTGATGAATCTTACTTTTGGTGA
ACTTCTTAGCTCATTTGGATTATCTTTTATGTTATTTGTGGAGCTGACAA
CTAGTATTGCACCAATAGGAGATCACGGTTGCCAATTCTTAACATGGTTA
GATTTAGCTTCAGTTACTGTAACTGTTACAACAATCGTAGCATTATTTTT
CGAATTTTACAAAGTTGTTTATAATAGTGCTCGTCCAAAGAAAATGAGAC
CTTATAAATTATGGGCATTGATTTTATTGTTATGGATTATTGCGTCGANT
AATAGTGCTCGTCCAAAGAAAATGAGACCTTATAAATTATGGGCATTGAT
TTTATTGTTATGGATAATTGCGTCGATTCCAGGAATGCCGTACATGGCCA
CTGCAAAAATGGGCACTGATGGGTTTTGTCATATGGGACGCTGGTCAGAT
GATGCCGAAGTCCTATTCATCTGTGCTATGATTTTCTTTCAAGTTTTGAT
CCCGTTAGCTTTAATTGTTTACTTTTTCGTACGTTCGCTACTTGCTCTAC
GCGTGGATACCATGGGTGGGACAATTTTGAGTGAAGAAGCAAACCCAGGG
TCAGAAGCAACCTTACAACGTGGTATTTTAAAACGTAAATTTCGTATGAT
TGGTTACATGGCATTGATTTTCTACATGATTTTGATTACAGTTAGTATTA
TTGAACTTTCCTTGGCTTTGAACTTGAATGACATTGACTNATTTTCTACA
TGATTTTGATAACAGTTAGTATTATTGAACTTTCCTTGGCTTTGAACTTG
AATGACATTGACTCGAATTTCGTAAAACGTGCTCGAGTACGTGAATTAGC
ATCTTTGTTACTCTGCTTGAAAACGGTATTCATTCCATTGTTATTTGTTT
TCAATGATAAGTTGATCAATCGTTTCAAGAAGATTTGTTGTTTGTGGCGT
CGTGACCCTGATATTTACAACAGTTTAAGGTATGATGTGTACCAACAGAC
TGTATCCGAGGGACAAGGGGACGGGTTCAATGATCGTTCAAATGAAGAAG
AGATGGCACTGGCTAATGAAGAGTTTGGTGAAACTGAAAGAGACGATGTT
GCCATTTTAGATTCCAGCTAAGGAGTATCATTAAATCAATGAATGAAAGG
TTAAAGTGGGAAGAATCAAAATGAGACTTCATTGTTCCAGCTAAGAAGTA
TCATTTTAAATCAATGAATAAAAAATTAAATGTGAAGAGAATCAAAAGGA
GTTGCGCCATTAAAAATGGGACTTCATTGTTCAGGAAGGAGCCAAGAATC
CAAAGATAACGATTTTGCTTACTCGAAGTGAAACTTTGTGGAACTTATTA
GCTATAATAACATGTTATAAACTTCATAGTTGCTATTGAAAGAACATTAT
TTCTGCAAGGGACAAAGATGATGATATTTTATGTCCTGCAAAATATTATG
TTTCTAACCTAGAAGAACTAATATGGACCAAGAATATTTATGACAATAAA
TGTATTGATTACAATAATAGTACATTGGACCCTAAATCACCAGAGAACTG
CCAGAGTTAATTATCTTATGAATGAACTTAGACTTATAATTATCTCACCC
ATAAAAGAAGAATATGATTTTTAATTTTTGACAATCAAAGCCCAATATAC
TGTATGAATGAAAGTGTTTCCGAATAAAAAATCATAGCAATTGTCAGCTT
TCTAATGTAAATTCTTTTGGTCCAAATCTTGCAACCATTTCTTCCATCTA
TTGTCTACAATTTAAACCTTTTTAAGTACTTTAGGTCTTACGTTCTTATA
TATTTATTCCTTTTTATAACATTCTTTTTCTATATCAACCAAAAAAAAAA
ACTTTAAAAAAATATTTAAATTTTAGGAAAATTTTAATTTATCAAAAAAT
TGAATTTAAAATCCGGACATTTTTTGGAAAAAATAAAGCTTCTTTCAAAA
TGTATATCTTCCTCCCTCCGTTTACAATTTGTTTTCTTTTACTCATGATA
TGCACCATAGCAATGTCTCCGCGGACCAAAGCTGATTGGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009283XLOC_009283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016613-exon-sc0000243-1575043694:305750..307024TCONS_00016613-exon-sc0000243-1575043694:305750..307024Clytia hemisphaericaexon
TCONS_00016613-exon-sc0000243-1575043694:304380..305675TCONS_00016613-exon-sc0000243-1575043694:304380..305675Clytia hemisphaericaexon
TCONS_00016613-exon-sc0000243-1510915933:305750..307024TCONS_00016613-exon-sc0000243-1510915933:305750..307024Clytia hemisphaericaexon
TCONS_00016613-exon-sc0000243-1510915933:304380..305675TCONS_00016613-exon-sc0000243-1510915933:304380..305675Clytia hemisphaericaexon
TCONS_00016613-exon-sc0000243-1491911889:305750..307024TCONS_00016613-exon-sc0000243-1491911889:305750..307024Clytia hemisphaericaexon
TCONS_00016613-exon-sc0000243-1491911889:304380..305675TCONS_00016613-exon-sc0000243-1491911889:304380..305675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:304380..307024 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00294662	0	0.00606639	0	0	1.38242e-06	9.81345e-08	0	0.459581	0	0	0	5.90154e-10	0	0	0	0	0	1.09664e-07	0	0	0	0	2.7347e-08	0	6.3958e-05	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top