TCONS_00016560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016560
Unique NameTCONS_00016560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016560 ID=TCONS_00016560|Name=TCONS_00016560|organism=Clytia hemisphaerica|type=transcript|length=710bp
GGTTTAGGATAAGCAGCCCTACTCATTTTAAGAGTATCAAGAAGTTTGAA
GTCAATCTCCTTAAGTAAATCAATCCAGGGCTTTCCTTCGTCTTCATTGT
TTCCGAGCCTGGTAAAAGCTGCAACTAGAAACTTCCAATCAAAACGGACG
TTATGTCCAAAGACTAACTTGGCAcctttgaaaaacttcaatatttCTTC
AGCATGTTCGTGAAACAGTTTCTgttttgccaagaaatcaggGTGAAGAT
TGTGAATCTCGTATGCTTTTGATTGAAGCTGATATTCACGATCGAGCTCA
GGATTGATGAAAATGTCAAGTTGCTCTTTCCGCTCTGTAGAGAAAACTTT
GGTCATTGATAATTGTACGATTCGATCTTTATTGCTATCTAAGCCTGTTG
TTTCCGTGTCAAAGACGATATAAGGAAGATCACCAACGCTGTCCTCGTCC
TCTTTCCCTGTTATAACCGATGCTTGAACATTATCGGAAGATTCTTTATC
CGCTATCTGTGTGTTGGAGTTGACATTATCATTATCCTCAACCTTTTCTT
CTATTGATATTTGAGCTGAATCAGCAGCATATTCATCCGCCATTTGCGTA
TTTTCAAGCAAAACCTGATTACTGCACTAGGTTCAACAAGAACTCAAAGC
ATTCGCTGTATCCTTTTAGAAAGTTCTTGCTTTAGAGAAGAGCGTGGCGT
TATACCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00016560-protein

>TCONS_00016560-protein ID=TCONS_00016560-protein|Name=TCONS_00016560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MADEYAADSAQISIEEKVEDNDNVNSNTQIADKESSDNVQASVITGKEDE
DSVGDLPYIVFDTETTGLDSNKDRIVQLSMTKVFSTERKEQLDIFINPEL
DREYQLQSKAYEIHNLHPDFLAKQKLFHEHAEEILKFFKGAKLVFGHNVR
FDWKFLVAAFTRLGNNEDEGKPWIDLLKEIDFKLLDTLKMSRAAYPK
Run BLAST on NCBI

transcript from alignment at sc0000241:219191..219900

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016560 ID=TCONS_00016560|Name=TCONS_00016560|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at sc0000241:219191..219900 (Clytia hemisphaerica)
TTCTGGTATAACGCCACGCTCTTCTCTAAAGCAAGAACTTTCTAAAAGGA
TACAGCGAATGCTTTGAGTTCTTGTTGAACCTAGTGCAGTAATCAGGTTT
TGCTTGAAAATACGCAAATGGCGGATGAATATGCTGCTGATTCAGCTCAA
ATATCAATAGAAGAAAAGGTTGAGGATAATGATAATGTCAACTCCAACAC
ACAGATAGCGGATAAAGAATCTTCCGATAATGTTCAAGCATCGGTTATAA
CAGGGAAAGAGGACGAGGACAGCGTTGGTGATCTTCCTTATATCGTCTTT
GACACGGAAACAACAGGCTTAGATAGCAATAAAGATCGAATCGTACAATT
ATCAATGACCAAAGTTTTCTCTACAGAGCGGAAAGAGCAACTTGACATTT
TCATCAATCCTGAGCTCGATCGTGAATATCAGCTTCAATCAAAAGCATAC
GAGATTCACAATCTTCACcctgatttcttggcaaaacAGAAACTGTTTCA
CGAACATGCTGAAGaaatattgaagtttttcaaaggTGCCAAGTTAGTCT
TTGGACATAACGTCCGTTTTGATTGGAAGTTTCTAGTTGCAGCTTTTACC
AGGCTCGGAAACAATGAAGACGAAGGAAAGCCCTGGATTGATTTACTTAA
GGAGATTGACTTCAAACTTCTTGATACTCTTAAAATGAGTAGGGCTGCTT
ATCCTAAACC

Coding sequence (CDS) from alignment at sc0000241:219191..219900

>TCONS_00016560 ID=TCONS_00016560|Name=TCONS_00016560|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000241:219191..219900 (Clytia hemisphaerica)
ATGGCGGATGAATATGCTGCTGATTCAGCTCAAATATCAATAGAAGAAAA
GGTTGAGGATAATGATAATGTCAACTCCAACACACAGATAGCGGATAAAG
AATCTTCCGATAATGTTCAAGCATCGGTTATAACAGGGAAAGAGGACGAG
GACAGCGTTGGTGATCTTCCTTATATCGTCTTTGACACGGAAACAACAGG
CTTAGATAGCAATAAAGATCGAATCGTACAATTATCAATGACCAAAGTTT
TCTCTACAGAGCGGAAAGAGCAACTTGACATTTTCATCAATCCTGAGCTC
GATCGTGAATATCAGCTTCAATCAAAAGCATACGAGATTCACAATCTTCA
CcctgatttcttggcaaaacAGAAACTGTTTCACGAACATGCTGAAGaaa
tattgaagtttttcaaaggTGCCAAGTTAGTCTTTGGACATAACGTCCGT
TTTGATTGGAAGTTTCTAGTTGCAGCTTTTACCAGGCTCGGAAACAATGA
AGACGAAGGAAAGCCCTGGATTGATTTACTTAAGGAGATTGACTTCAAAC
TTCTTGATACTCTTAAAATGAGTAGGGCTGCTTATCCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009254XLOC_009254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016560-proteinTCONS_00016560-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016560-exon-sc0000241-1491911889:219191..219900TCONS_00016560-exon-sc0000241-1491911889:219191..219900Clytia hemisphaericaexon
TCONS_00016560-exon-sc0000241-1510915933:219191..219900TCONS_00016560-exon-sc0000241-1510915933:219191..219900Clytia hemisphaericaexon
TCONS_00016560-exon-sc0000241-1575043694:219191..219900TCONS_00016560-exon-sc0000241-1575043694:219191..219900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:219191..219900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.212442	0	0.481074	0.0784427	1.62344	1.58471	1.00147	1.19326	1.25314	1.03481	0.789183	1.65066	3.86188	4.25515	1.04547	2.33021	1.43531	2.16673	1.64062	3.44199	3.39678	2.40449	3.88225	3.22057	1.44456	1.89993	8.50605	8.33479	6.56945	4.38832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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