TCONS_00016559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016559
Unique NameTCONS_00016559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016559 ID=TCONS_00016559|Name=TCONS_00016559|organism=Clytia hemisphaerica|type=transcript|length=636bp
GCAATTTACGTGCACGGAATCCTTGGATACCGTTACACAATGAAAGAAAA
GCAGCAATGAAGAGTTGAATATAAATCATGATTTCGTTGCTACAGTAATA
CTCTTTGGTTAATGTTTGGTCAAAGTAATTCTGTTGTATGGTGACCTGTG
CATTGATTAAGAACCAAAGCTGTAGAATAGCGTTCATTAATAATGCAGTC
AATATAATAATCCATTCTGATGCTTTAGTCATGAGAATTTCCGTATTAGA
CATCAAAGTTTTACTTGTAATGATCATGTAcagtttttgagattttgaaa
tGTTGATCGATAGGGTGAGGCTGAAAGCCATCCCAAGAAAGATCTGCTCA
AAAACGCAGGCTGTCCGTGATAATGAGGTGAAAACGGGTAGTGTTGGGAA
TAAAAACAGCAATAAATGACTGCACAGCTGAATGGAAGTCATTGTTCGAT
TGGCTTGTTTAACAATTGGTGTTTCACGCTTTATAAGGAATACAACCATG
GTGAAGATGGTCAATATTGTCATCAACGCTGATGGAATGAGCACCACCAA
CAAAACTGGGTCTTTAATATCAAGATTGATTTCCTTGTGAGGGTCATAGC
AGTTGGTGCGATTATGGTTGACCTTATTTGGATACA
Run BLAST on NCBI

protein sequence of TCONS_00016559-protein

>TCONS_00016559-protein ID=TCONS_00016559-protein|Name=TCONS_00016559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
YPNKVNHNRTNCYDPHKEINLDIKDPVLLVVLIPSALMTILTIFTMVVFL
IKRETPIVKQANRTMTSIQLCSHLLLFLFPTLPVFTSLSRTACVFEQIFL
GMAFSLTLSINISKSQKLYMIITSKTLMSNTEILMTKASEWIIILTALLM
NAILQLWFLINAQVTIQQNYFDQTLTKEYYCSNEIMIYIQLFIAAFLSLC
NGIQGFRARKL
Run BLAST on NCBI

transcript from alignment at sc0000241:196876..197511

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016559 ID=TCONS_00016559|Name=TCONS_00016559|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at sc0000241:196876..197511 (Clytia hemisphaerica)
TGTATCCAAATAAGGTCAACCATAATCGCACCAACTGCTATGACCCTCAC
AAGGAAATCAATCTTGATATTAAAGACCCAGTTTTGTTGGTGGTGCTCAT
TCCATCAGCGTTGATGACAATATTGACCATCTTCACCATGGTTGTATTCC
TTATAAAGCGTGAAACACCAATTGTTAAACAAGCCAATCGAACAATGACT
TCCATTCAGCTGTGCAGTCATTTATTGCTGTTTTTATTCCCAACACTACC
CGTTTTCACCTCATTATCACGGACAGCCTGCGTTTTTGAGCAGATCTTTC
TTGGGATGGCTTTCAGCCTCACCCTATCGATCAACatttcaaaatctcaa
aaactgTACATGATCATTACAAGTAAAACTTTGATGTCTAATACGGAAAT
TCTCATGACTAAAGCATCAGAATGGATTATTATATTGACTGCATTATTAA
TGAACGCTATTCTACAGCTTTGGTTCTTAATCAATGCACAGGTCACCATA
CAACAGAATTACTTTGACCAAACATTAACCAAAGAGTATTACTGTAGCAA
CGAAATCATGATTTATATTCAACTCTTCATTGCTGCTTTTCTTTCATTGT
GTAACGGTATCCAAGGATTCCGTGCACGTAAATTGC

Coding sequence (CDS) from alignment at sc0000241:196876..197511

>TCONS_00016559 ID=TCONS_00016559|Name=TCONS_00016559|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000241:196876..197511 (Clytia hemisphaerica)
TATCCAAATAAGGTCAACCATAATCGCACCAACTGCTATGACCCTCACAA
GGAAATCAATCTTGATATTAAAGACCCAGTTTTGTTGGTGGTGCTCATTC
CATCAGCGTTGATGACAATATTGACCATCTTCACCATGGTTGTATTCCTT
ATAAAGCGTGAAACACCAATTGTTAAACAAGCCAATCGAACAATGACTTC
CATTCAGCTGTGCAGTCATTTATTGCTGTTTTTATTCCCAACACTACCCG
TTTTCACCTCATTATCACGGACAGCCTGCGTTTTTGAGCAGATCTTTCTT
GGGATGGCTTTCAGCCTCACCCTATCGATCAACatttcaaaatctcaaaa
actgTACATGATCATTACAAGTAAAACTTTGATGTCTAATACGGAAATTC
TCATGACTAAAGCATCAGAATGGATTATTATATTGACTGCATTATTAATG
AACGCTATTCTACAGCTTTGGTTCTTAATCAATGCACAGGTCACCATACA
ACAGAATTACTTTGACCAAACATTAACCAAAGAGTATTACTGTAGCAACG
AAATCATGATTTATATTCAACTCTTCATTGCTGCTTTTCTTTCATTGTGT
AACGGTATCCAAGGATTCCGTGCACGTAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009253XLOC_009253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016559-proteinTCONS_00016559-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016559-exon-sc0000241-1491911889:196876..197511TCONS_00016559-exon-sc0000241-1491911889:196876..197511Clytia hemisphaericaexon
TCONS_00016559-exon-sc0000241-1510915933:196876..197511TCONS_00016559-exon-sc0000241-1510915933:196876..197511Clytia hemisphaericaexon
TCONS_00016559-exon-sc0000241-1575043694:196876..197511TCONS_00016559-exon-sc0000241-1575043694:196876..197511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:196876..197511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166172	0.324088	0.752594	0.368148	0	0	0	0.100004	0.070015	0	0	0	0.718353	0.573859	0	0	0	0	2.64967	1.2015	0.0803323	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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