TCONS_00016548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016548
Unique NameTCONS_00016548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016548 ID=TCONS_00016548|Name=TCONS_00016548|organism=Clytia hemisphaerica|type=transcript|length=2019bp
CTTATTAGGGCCAAGGGATCCAACTTGGATTGAATCTCAAAGTTTCctgg
atttgaaaaaaattctttcaacctGGACAACTCTTTTCCAGCTTCAATAA
GCTCGGTATGAAACTCCAACGCTGAGAGATAGAATCGGCCATCGAGAAGC
TTCTTTGCAATTTCATCTACTTCTTCAACAGATAGCCTCACAACCAATGG
GGATTTCCTTCCAATAGAATTTACAAACATCTATCTTGATCCGATTCCCg
aatcagcaaaaaatattcaaaatggcggacgaCGGAGAGCAAATTGCCAG
ATTTATCAGCCTAACGAATGCTGACGATGAAAGAGCCCGTTTCTACTTAA
ATGCAGCCAACGGAGATTTGAATACTGCTGTAGCTACATTCTTTGATTCT
TCTGCAAATGACGGGGAAGATATTGCTCCTTCAGTGATGGAAACAGAAGA
TGCCCCACcagcagcagcagcagcagAAATTCCCGATCCAAGAAAGTCAA
TGCCTTCTAAACGAGGAAACAAAGGCAACAGCCGCATCACTACTTTGGCA
TCTTATAACCAATCCAACAGTGATTCTGATGATGAAGAAGGTCAAGCTTT
CTTTGCTGGGGGCTCAGAAACAAGCGGTCAGCAGATTTTAGGtccaaaca
aaaagaaaaagaatgctGATTTAAAGCAGAACATTTTTGATGCTGCAAAA
AGCCATGGGGCTGAAGTTGTCACTGATGAACCATCTAGACAACCAAGGGC
ACAGCGTAGTGTATTTCAAGGGGCTGGATTTACACTTGGATCCAATGTTG
ATGAATCAAAGCAAATTGGAACTTCTGTTTCAAATACTGCAAAAGCTGAT
AAACCTAGAACTATTGTCattaaattttggcaaaatggtTTTTCTATTGA
TGATGGACCTCTAAGAAACCCACAAGATCCTGTCAATTCTCAATTCATGG
AAGATATAAAGAGAGGTCAGGTCCCTGCAGAACTGCGCCAACATGCCCGG
GGTGAAGAGGTTCATGTAAACATGGAAGATCATAGTCATGAAGACTATGT
GAAACCTAAAGAGACTTTCAAAGCCTTTGTTGGGTCAGGAAATACATTAG
GTAGTCCTACACCAAATGTTGCTGAAAGCTCCCTGCCTGCTACTACTTTA
CCACCAGCTCCTACCACAACCCTTCCTCAACAGCCTGCATTTANAATGTT
GCTGAAAGCTCCCAGCCTGCTTCTACTTTACCACCAGctcctaccacagc
ccttcctCAACAGCCTGCATTTAAAGTTGATGAAAGCAAACCAGTGACAA
CGATTCAGATTCGTCTTGCAGATGGTACAAGACTTGTGACTAAATTTAAT
ACAGACAATACTGTTGGAGATATAAGGAATGTTGTTAGAAATGCAAGGCC
AGGGCAAACAGAGTTCAAATTAATGACAACTTTCCCAAATAAACTTCTAT
CAAATGACGAAGAGACAATTGAACAAGCAAAACTGAAGAATGCTGTTATT
GTTCAAAGAATGTagcttgatatttttttatatatttgtgGTTACAATTA
TCAATAATTTCCCTgtgattttttgttgaaatttcaaaacatttcaattt
ttttctattaggATTTTACAGATTTATTTATGAAGACAAACTAATTTCCA
AAGCATCATTTTTATGACTCCAGCTCGATTgattactctcgggtgcctaa
taaacgtacatgtacgtttatttttttcgtgtcaaatttcccgcctgtac
gcaccttattaggaactttacgtttatttattctgaagaattttcccgcc
tgtacgtttattccctcctgtacgtttatttattttcacccaATATCACC
CAATTCATACTgcaaaaaattgttattttttgttcaagtaagaTATGTTG
AAAGGCCGTTAATTACATTTGAAAGTATAATGGGAGATTTTGAGTGTTAC
ATGagtaaattcgaacgttttgcttATTTACTACTTGTCATTGATCTATA
AGAGATATACCTGTACTTT
Run BLAST on NCBI

protein sequence of TCONS_00016548-protein

>TCONS_00016548-protein ID=TCONS_00016548-protein|Name=TCONS_00016548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MADDGEQIARFISLTNADDERARFYLNAANGDLNTAVATFFDSSANDGED
IAPSVMETEDAPPAAAAAEIPDPRKSMPSKRGNKGNSRITTLASYNQSNS
DSDDEEGQAFFAGGSETSGQQILGPNKKKKNADLKQNIFDAAKSHGAEVV
TDEPSRQPRAQRSVFQGAGFTLGSNVDESKQIGTSVSNTAKADKPRTIVI
KFWQNGFSIDDGPLRNPQDPVNSQFMEDIKRGQVPAELRQHARGEEVHVN
MEDHSHEDYVKPKETFKAFVGSGNTLGSPTPNVAESSLPATTLPPAPTTT
LPQQPAFXMLLKAPSLLLLYHQLLPQPFLNSLHLKLMKANQ
Run BLAST on NCBI

transcript from alignment at sc0000241:22590..24878-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016548 ID=TCONS_00016548|Name=TCONS_00016548|organism=Clytia hemisphaerica|type=transcript|length=2289bp|location=Sequence derived from alignment at sc0000241:22590..24878- (Clytia hemisphaerica)
CTTATTAGGGCCAAGGGATCCAACTTGGATTGAATCTCAAAGTTTCCTGG
ATTTGAAAAAAATTCTTTCAACCTGGACAACTCTTTTCCAGCTTCAATAA
GCTCGGTATGAAACTCCAACGCTGAGAGATAGAATCGGCCATCGAGAAGC
TTCTTTGCAATTTCATCTACTTCTTCAACAGATAGCCTCACAACCAATGG
GGATTTCCTTCCAATAGGTATATCAATCGATTGAATACTAATTTTTCCAG
GACTGTCAGGTCGATTTTCGATGATCGCGTCCGCCATATTTGTTGTTTTC
CCCGAAACATTCGGTGGTATTTTACAGAATAAGAACAAAAAAGATGTATG
AAAACTGAGATGGATGTTTTGTGAAATACAAAAGCAATCTAACATAATTT
TAGGTCAAAATATTGCACACGTTGTTTTTAAAAACTTGTTTTTAACTTAG
GAAGAAAAGATTTCAAATTTAGCTTCTTGGTATTTAGAATTTACAAACAT
CTATCTTGATCCGATTCCCGAATCAGCAAAAAATATTCAAAATGGCGGAC
GACGGAGAGCAAATTGCCAGATTTATCAGCCTAACGAATGCTGACGATGA
AAGAGCCCGTTTCTACTTAAATGCAGCCAACGGAGATTTGAATACTGCTG
TAGCTACATTCTTTGATTCTTCTGCAAATGACGGGGAAGATATTGCTCCT
TCAGTGATGGAAACAGAAGATGCCCCACCAGCAGCAGCAGCAGCAGAAAT
TCCCGATCCAAGAAAGTCAATGCCTTCTAAACGAGGAAACAAAGGCAACA
GCCGCATCACTACTTTGGCATCTTATAACCAATCCAACAGTGATTCTGAT
GATGAAGAAGGTCAAGCTTTCTTTGCTGGGGGCTCAGAAACAAGCGGTCA
GCAGATTTTAGGTCCAAACAAAAAGAAAAAGAATGCTGATTTAAAGCAGA
ACATTTTTGATGCTGCAAAAAGCCATGGGGCTGAAGTTGTCACTGATGAA
CCATCTAGACAACCAAGGGCACAGCGTAGTGTATTTCAAGGGGCTGGATT
TACACTTGGATCCAATGTTGATGAATCAAAGCAAATTGGAACTTCTGTTT
CAAATACTGCAAAAGCTGATAAACCTAGAACTATTGTCATTAAATTTTGG
CAAAATGGTTTTTCTATTGATGATGGACCTCTAAGAAACCCACAAGATCC
TGTCAATTCTCAATTCATGGAAGATATAAAGAGAGGTCAGGTCCCTGCAG
AACTGCGCCAACATGCCCGGGGTGAAGAGGTTCATGTAAACATGGAAGAT
CATAGTCATGAAGACTATGTGAAACCTAAAGAGACTTTCAAAGCCTTTGT
TGGGTCAGGAAATACATTAGGTAGTCCTACACCAAATGTTGCTGAAAGCT
CCCTGCCTGCTACTACTTTACCACCAGCTCCTACCACAACCCTTCCTCAA
CAGCCTGCATTTANAATGTTGCTGAAAGCTCCCAGCCTGCTTCTACTTTA
CCACCAGCTCCTACCACAGCCCTTCCTCAACAGCCTGCATTTAAAGTTGA
TGAAAGCAAACCAGTGACAACGATTCAGATTCGTCTTGCAGATGGTACAA
GACTTGTGACTAAATTTAATACAGACAATACTGTTGGAGATATAAGGAAT
GTTGTTAGAAATGCAAGGCCAGGGCAAACAGAGTTCAAATTAATGACAAC
TTTCCCAAATAAACTTCTATCAAATGACGAAGAGACAATTGAACAAGCAA
AACTGAAGAATGCTGTTATTGTTCAAAGAATGTAGCTTGATATTTTTTTA
TATATTTGTGGTTACAATTATCAATAATTTCCCTGTGATTTTTTGTTGAA
ATTTCAAAACATTTCAATTTTTTTCTATTAGGATTTTACAGATTTATTTA
TGAAGACAAACTAATTTCCAAAGCATCATTTTTATGACTCCAGCTCGATT
GATTACTCTCGGGTGCCTAATAAACGTACATGTACGTTTATTTTTTTCGT
GTCAAATTTCCCGCCTGTACGCACCTTATTAGGAACTTTACGTTTATTTA
TTCTGAAGAATTTTCCCGCCTGTACGTTTATTCCCTCCTGTACGTTTATT
TATTTTCACCCAATATCACCCAATTCATACTGCAAAAAATTGTTATTTTT
TGTTCAAGTAAGATATGTTGAAAGGCCGTTAATTACATTTGAAAGTATAA
TGGGAGATTTTGAGTGTTACATGAGTAAATTCGAACGTTTTGCTTATTTA
CTACTTGTCATTGATCTATAAGAGATATACCTGTACTTT

Coding sequence (CDS) from alignment at sc0000241:22590..24878-

>TCONS_00016548 ID=TCONS_00016548|Name=TCONS_00016548|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000241:22590..24878- (Clytia hemisphaerica)
ATGGCGGACGACGGAGAGCAAATTGCCAGATTTATCAGCCTAACGAATGC
TGACGATGAAAGAGCCCGTTTCTACTTAAATGCAGCCAACGGAGATTTGA
ATACTGCTGTAGCTACATTCTTTGATTCTTCTGCAAATGACGGGGAAGAT
ATTGCTCCTTCAGTGATGGAAACAGAAGATGCCCCACCAGCAGCAGCAGC
AGCAGAAATTCCCGATCCAAGAAAGTCAATGCCTTCTAAACGAGGAAACA
AAGGCAACAGCCGCATCACTACTTTGGCATCTTATAACCAATCCAACAGT
GATTCTGATGATGAAGAAGGTCAAGCTTTCTTTGCTGGGGGCTCAGAAAC
AAGCGGTCAGCAGATTTTAGGTCCAAACAAAAAGAAAAAGAATGCTGATT
TAAAGCAGAACATTTTTGATGCTGCAAAAAGCCATGGGGCTGAAGTTGTC
ACTGATGAACCATCTAGACAACCAAGGGCACAGCGTAGTGTATTTCAAGG
GGCTGGATTTACACTTGGATCCAATGTTGATGAATCAAAGCAAATTGGAA
CTTCTGTTTCAAATACTGCAAAAGCTGATAAACCTAGAACTATTGTCATT
AAATTTTGGCAAAATGGTTTTTCTATTGATGATGGACCTCTAAGAAACCC
ACAAGATCCTGTCAATTCTCAATTCATGGAAGATATAAAGAGAGGTCAGG
TCCCTGCAGAACTGCGCCAACATGCCCGGGGTGAAGAGGTTCATGTAAAC
ATGGAAGATCATAGTCATGAAGACTATGTGAAACCTAAAGAGACTTTCAA
AGCCTTTGTTGGGTCAGGAAATACATTAGGTAGTCCTACACCAAATGTTG
CTGAAAGCTCCCTGCCTGCTACTACTTTACCACCAGCTCCTACCACAACC
CTTCCTCAACAGCCTGCATTTANAATGTTGCTGAAAGCTCCCAGCCTGCT
TCTACTTTACCACCAGCTCCTACCACAGCCCTTCCTCAACAGCCTGCATT
TAAAGTTGATGAAAGCAAACCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009246XLOC_009246Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016548-proteinTCONS_00016548-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016548-exon-sc0000241-1575043694:24662..24878TCONS_00016548-exon-sc0000241-1575043694:24662..24878Clytia hemisphaericaexon
TCONS_00016548-exon-sc0000241-1575043694:22590..24391TCONS_00016548-exon-sc0000241-1575043694:22590..24391Clytia hemisphaericaexon
TCONS_00016548-exon-sc0000241-1510915933:24662..24878TCONS_00016548-exon-sc0000241-1510915933:24662..24878Clytia hemisphaericaexon
TCONS_00016548-exon-sc0000241-1510915933:22590..24391TCONS_00016548-exon-sc0000241-1510915933:22590..24391Clytia hemisphaericaexon
TCONS_00016548-exon-sc0000241-1491911889:24662..24878TCONS_00016548-exon-sc0000241-1491911889:24662..24878Clytia hemisphaericaexon
TCONS_00016548-exon-sc0000241-1491911889:22590..24391TCONS_00016548-exon-sc0000241-1491911889:22590..24391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:22590..24878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.4497	75.7667	32.0721	28.4041	48.6142	39.3777	37.0049	42.4151	33.6578	27.4305	18.4983	14.344	10.411	9.19975	11.9703	13.8363	35.6506	17.9902	2.58853	3.85086	17.5988	14.1296	96.2634	83.5751	42.3747	42.721	37.7869	30.9968	50.6363	59.8052
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012989SEP_domain
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00016548 vs. Swiss-Prot (Human)
Match: NSF1C (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.409e-52
Identity = 117/292 (40.07%), Postives = 173/292 (59.25%), Query Frame = 2 
Query:  275 ADDGEQIARFISLTNADDERARFYLNAANGDLNTAVATFFDSSANDGEDIAPSVMETEDXXXXXXXXEIPDPRKSMPSKRGNKGNSRITTLASY-NQSNSDSDDEEGQAFFAGGSETSGQQILGPNKKKKNADLKQNIFDAAKSHGA---EVVTDEP--SRQPRAQRSVFQGAGFTLGSNVDESKQIGTSVSNTAKADKPRTIVIKFWQNGFSIDDGPLRNPQDPVNSQFMEDIKRGQVPAELRQHARGEEVHVNMEDHSHEDYVKPKETFKAFVGSGNTLGSPTPNVAESS 1132
            A+  E +  F+++T A+++RARF+L +A  DL  A+A+F++    DG D        ED    + A      R + PS      ++R+T+     +  + D ++EEGQ F+AGGSE SGQQI+GP +KK   +L  ++F  AK HGA   E VT  P  + +PR     F G G+ LG+  +E      +      + +   +V+K W++GFS+D+G LR+ QDP N+QF+E I+RG+VPAELR+ A G +V+++MEDH  ED+VKPK  FKAF G G  LGS  P V  +S
Sbjct:    3 AERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE----DGGD--------EDIVTISQATPSSVSRGTAPS------DNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP----FAGGGYRLGAAPEEESAY-VAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS 271

HSP 2 Score: 92.4337 bits (228), Expect = 4.092e-20
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1 
Query: 1276 VDESKPVTTIQIRLADGTRLVTKFNTDNTVGDIRNVVRNARPGQ--TEFKLMTTFPNKLLSNDEETIEQAKLKNAVIVQRM 1512
            +DES+P T IQIRLADG RLV KFN  + + DIR  + +ARP    T F LMTTFPNK L+++ +T+++A L NAVIVQR+
Sbjct:  289 IDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
The following BLAST results are available for this feature:
BLAST of TCONS_00016548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSF1C3.409e-5240.07NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
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