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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016534 ID=TCONS_00016534|Name=TCONS_00016534|organism=Clytia hemisphaerica|type=transcript|length=3660bpRun BLAST on NCBI transcript from alignment at sc0000241:210822..231580+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016534 ID=TCONS_00016534|Name=TCONS_00016534|organism=Clytia hemisphaerica|type=transcript|length=20759bp|location=Sequence derived from alignment at sc0000241:210822..231580+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016534 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2) HSP 1 Score: 1059.28 bits (2738), Expect = 0.000e+0 Identity = 471/665 (70.83%), Postives = 570/665 (85.71%), Query Frame = 2
Query: 1481 RVTRNESAWRGWFDKDAPEEHPIPDGYQTSLDTFKKLLLIRSWCPDRTLSQARKYIGESMGERFAEGVILNLEATWEESDIKTPMIGLLSMGSDPTSAIEGLAKRNNIECRAISMGQGQEIHARRLIQQCSTGGGWVLLQNCHLGLDFMDELLEYVLTVTTAHDTFRIWITTEVHPKFPIGLLQCSIKFTNEPPQGVKAGLKRTYAGVSQDQLDICSMPQWKSMLYGVAFLHTVVQERRKFGPLGWNIPYEFNQSDLTATVQFVQNHLDDLDAKKGVSWNTVRYMIGEVQYGGRVTDDYDKRLLNTYAKVWFSDDMFKEEFNFFKGYNIPKVNSIDEFRECITALPAMDTPEVFGLHANADITYQTNTTRETLETILNIQPKDSGGGSGETRESIVMRQAQDMLSRLPDDYVPHEVKARLQKMGALQPLNIFLRQEIDRMQRVITIVRNTLTDLQLAIEGTIIMSENLRDALDNIYDARVPTLWQKISWQSSTIGFWFTELIERNQQFHNWVFNGRPKVFWMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVLHNDVMKQMKEDISSAPAEGVYVHGLFIDGAAWDRKNCKLIESAPKTLFSILPVVHVYAINNTGPKDPRLYMCPVYKKPNRTDLTYITPLWLRTSQNPDHWILRGVALLCDIK 3475
+++RNE W+ WFDKDAPEE IPDGY SLDT KLLLIRSWCPDRT+ QARKYI +S+ E++ E VILNLE TWEESD +TP+I LSMGSDPT+ I+ LAK+ +ECR ISMGQGQE+HAR+LIQ GGWVLLQNCHLGL+FM+ELLE ++T + D+FR+WITTE H +FPI LLQ S+KFTNEPPQGV+AGLKRT+AG++QD LDI ++P WK MLY VAFLH+ VQERRKFGPLGWNIPYEFN +D +A+VQF+QNHLD+ D KKGVSWNTVRYMIGEVQYGGRVTDD+DKRLLN +A+VWFS+ MF+ F F+ GY IP ++D++ E I +LP++D PEVFGLH NADITYQ+NT LETI NIQPK+SGGG GETRE+IV R ++DMLS+LP DY+PHEVK+RL KMG L +NIFLRQEIDRMQRVI+I+R++L+DL+LAIEGTIIMSENLRDALDN+YDAR+P LW+++SW SST+GFWFTEL+ERN QF W+F GRP VFWMTGFFNPQGFLTAMRQEVTRAHKGWALD+V +HN+V++Q KE+I+S P EGVY++GL++DGAAWDR+N KL+ES PK LF+ LPV+H++AIN+T PKDP+LY+CP+YKKP RTDLT+IT ++LRT +PDHWILRGVALLCDIK
Sbjct: 3826 QISRNEKGWKSWFDKDAPEEEIIPDGYNDSLDTCHKLLLIRSWCPDRTVFQARKYIADSLEEKYTEPVILNLEKTWEESDTRTPLICFLSMGSDPTNQIDALAKKLKLECRTISMGQGQEVHARKLIQMSMQQGGWVLLQNCHLGLEFMEELLETLITTEASDDSFRVWITTEPHDRFPITLLQTSLKFTNEPPQGVRAGLKRTFAGINQDLLDISNLPMWKPMLYTVAFLHSTVQERRKFGPLGWNIPYEFNSADFSASVQFIQNHLDECDIKKGVSWNTVRYMIGEVQYGGRVTDDFDKRLLNCFARVWFSEKMFEPSFCFYTGYKIPLCKTLDQYFEYIQSLPSLDNPEVFGLHPNADITYQSNTASAVLETITNIQPKESGGGVGETREAIVYRLSEDMLSKLPPDYIPHEVKSRLIKMGHLNSMNIFLRQEIDRMQRVISILRSSLSDLKLAIEGTIIMSENLRDALDNMYDARIPQLWKRVSWDSSTLGFWFTELLERNAQFSTWIFEGRPNVFWMTGFFNPQGFLTAMRQEVTRAHKGWALDTVTIHNEVLRQTKEEITSPPGEGVYIYGLYMDGAAWDRRNGKLMESTPKVLFTQLPVLHIFAINSTAPKDPKLYVCPIYKKPRRTDLTFITVVYLRTVLSPDHWILRGVALLCDIK 4490 HSP 2 Score: 774.237 bits (1998), Expect = 0.000e+0 Identity = 369/496 (74.40%), Postives = 433/496 (87.30%), Query Frame = 1
Query: 1 QANLIIQEARLGVAQGDLDAAQATLDEKQAELDEVQALYDGAMKEKQDLMDDAIGCKKKMEAASALIDGLSGERVRWTQQSKEFQEQIGRLVGDVLLATGFLSYSGPFNQTFRTRL-RTSWQSELKKRRIPFTEDLNITAMLVDNATIGEWNLQGLPNDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKNKEADNELQVSTLNHKYFRTHLEDCLSLGRPLLLEDIGEELDPALDNVLEKNFIKSGSTYKVKVGDKECDVMDGFRLYITTKLGNPAYTPEVSARTAIIDFTVTMKGLEDQLLGRVINTEKQELEAERVTLMEDVTANKRKMKELEDNLLYRLTSTQGSLVEDESLVAVLKTTKQTAQEVSEKLLIASETEIKINEAREEFRPVATRGSILYFLVVEMSIVNTMYQTSLQQFLQIFDASMDKSEKSPITTKRIANIIDFLTFEVYKYAARGLYEKDKFMYTILLALKIDLEKGTVKHGEFQCLIKG 1485
+ANL QE RL VA +L AQA LDEKQAELD+VQA +D AM EK DL++DA C+KKM+AAS LIDGLSGE++RWTQQSKEF+ QI RLVGD+LL TGFLSY GPFNQ FR L + W+ EL+ R+IPFTE+LN+ +MLVD TIGEW LQGLP DDLSIQNGIIVTKATRYPLLIDPQTQGKTWIK+KE +N+LQV++LNHKYFRTHLED LSLGRPLL+EDI EELDPALDNVLEKNFIKSG+T+KVKVGDKECD+MD F+LYITTKL NPA+TPE++A+T++IDFTVTMKGLE+QLL RVI TEKQELEAERV L+EDVT NKRKMKELEDNLLY+L++T+GSLV+DESL+ VL+TTKQTA EVSEKL +A+ETEIKIN A+EEFRP ATRGSILYFL+ EMS+VN MYQTSL QFL++FD SM +SEKSP+ KRI NII++LT+EV+ Y+ RGLYE KF++ +L+ LKIDL++GTVKH EFQ LIKG
Sbjct: 3291 KANLAKQEGRLAVANAELGKAQALLDEKQAELDKVQAKFDAAMNEKMDLLNDADTCRKKMQAASTLIDGLSGEKIRWTQQSKEFKAQINRLVGDILLCTGFLSYLGPFNQIFRNYLLKDQWEMELRARKIPFTENLNLISMLVDPPTIGEWGLQGLPGDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKSKEKENDLQVTSLNHKYFRTHLEDSLSLGRPLLIEDIHEELDPALDNVLEKNFIKSGTTFKVKVGDKECDIMDTFKLYITTKLPNPAFTPEINAKTSVIDFTVTMKGLENQLLRRVILTEKQELEAERVKLLEDVTFNKRKMKELEDNLLYKLSATKGSLVDDESLIGVLRTTKQTAAEVSEKLHVAAETEIKINAAQEEFRPAATRGSILYFLITEMSMVNIMYQTSLAQFLKLFDQSMARSEKSPLPQKRITNIIEYLTYEVFTYSVRGLYENHKFLFVLLMTLKIDLQRGTVKHREFQALIKG 3786 The following BLAST results are available for this feature:
BLAST of TCONS_00016534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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