TCONS_00016523 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016523
Unique Name	TCONS_00016523
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2198

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000241:112260..118762+

transcript sequence

>TCONS_00016523 ID=TCONS_00016523|Name=TCONS_00016523|organism=Clytia hemisphaerica|type=transcript|length=2198bp
GAAGTGAAAGGGAACTCTTTTGATAAAATCGGTTTGcacataaaagaaaa
acatctaaATTAGCCACAGAGTGGTACAATATTAGAAGTTTTAGTTACAA
TTTTacaataattgaaaaatttgccTGCATGCCAAATCGTCTTCCAAAAT
AGCCACTTCAAGTGGTTCAGGCCTAAAAtgagttttgaattttaaaattt
gaatccTTGGTCTTTAACCaagctttaaaaaaagttaatctGGAAGTAAT
ATTATTATCAACTTGGGTTACCATTCTAATATAAATAGGGTATAAGAAGC
CTCTGATTTGGTgctttgatttcaattttgtaTAGTTAGTTACAGTAGGG
ATATCGTAGGGGTAAGATTGTTatgttgaaaagaaataattctacatgaa
ttttattttcttgcagcaagaacaaacaaaaatatattataaattGAATA
CATTAAACACACATAAAAAATGGGGCCAAAGAAAAAAGGAGGGAAGAAAT
CTGCCAAAGCAAAGGCACCCACAATCGTTGATGGAATCAGTACAGAAGAA
ATGACTAAAGAACAGCTTGAAGAATACATTGTAAGACTACGTGAGGAACT
AGACAGAGAACGTGAGGAAAGGAATTATTTTCAACTGGAACGTGACAAGG
TCAATACATTTTGGGAAATCACCAAGAGACAGTATGAGGAACGGAAAGCA
GATCTACGGAACAAAGAACGTGAAATGGAAGAAGCTGAGGAGAGACATCA
AGTGGAAATCAAAGTTTATAAACAAAAAGTCAAACATCTTCTCTATgaac
atcaaaataatattacaGAACTAAAAGCAGAGAATGCTGTTGCATTGAAG
TTAGCACAAGATGATTACAATGACAACGAATCAGAACTTCGAAAAGATAA
ACGAAATCTTAAAGTGGAACTCAAAGAACAAGAACTTTCAAATGAAGATC
TATTAAAAACACTAATTAGGAAAAAAGATGAACAGATCACAGCGTTACGT
AATGATTTCGAACGACAAGCAAAAGAAATCGAATCAAAATACGAGCGTAA
AATGCGTATGTTACGTGACGAACTGGAATTACGACGTAAGACGGAGATTC
ACGAGGTTGAAGAACGTAAGAACAGTCAGATCAACACGTTGATGAAGAAC
CACGAGAAGGCATTCAGTGATATCAAGAACTATTATAATGACATCACACT
CAATAATCTGGCACTTATTAACTCGCTGAAGGAACAAGTAGAAGAGATGC
GTAAGAAGGAAGAGCGTTTAGAGAAGCAAATGAACGAAGTGATGACTGAG
AATCGACGCCTCATTGAACCTCTTCAAAAAGCTAAAGAAGAAGTTCAAGA
ATTACAAAAACAGCTCGCGAATTACGAAAAAGACAAAGCTTCATTACAAA
GCGCCAAAGCAAGACTTCGCGTACAAGAACAAGAGCTCGGAAAATTACAA
TGGGAGCATGAAGTTCTTCGACAACGTTTCGAACAAACACAGAACGAACG
TGATGAATTATATAATAAATTCGTGACCGCCATACATGAAGTGCAACAGA
AGAGTAACTTCAAAAATTTGTTGTTGGAAAAGAAATTGGGTGCTCTTGCT
GATACCCTTGAGAAGAAGGAAGCACAATTGAATGAAGTATTATCAGCATC
CAATCTCGATCCAACTGCATTGACAGTCGTCACTAGAAAACTCGAGGATG
TATTGGACTCGAAGAACAGCGCCATTAAAGATCTTCAATATGAACTTGCT
CGTGTTTGCAAGGCTCACAACGATTTAATTCGAACGTACGAAGCAAAATT
CCGTTCGTTTGGTGTTCCCACAGAAGAACTCGGTTTCAAACCCCTTCAAA
GCAATGTCACTGGGCAACAACTTGGTAAAGGCGCTGCTGGATTGGTCGCT
CAACCAACTTAACAAATTAGTACCCAAACTCCCTTATTTTGTAAGAAACA
GGTATATatgtaatttattttattattttttaactgCTTGCTTGAACTAT
TATGTAAATTTAAAAGAGCTAAGGAGATTGTATATACgtaacttgatttt
tttggaactGATCAATATTATTTTAGTAATGCCAACAAACTTCAATTTTT
GTTAATTCCTTTTTTAAAAACCATTCGTTTAACAGCTCTCTGTGTGCATA
ATTGTAGGGATGGTTGGAATAAGCAAGGGGGTGGATTGGTACTTTGGG

Run BLAST on NCBI

transcript from alignment at sc0000241:112260..118762+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016523 ID=TCONS_00016523|Name=TCONS_00016523|organism=Clytia hemisphaerica|type=transcript|length=6503bp|location=Sequence derived from alignment at sc0000241:112260..118762+ (Clytia hemisphaerica)
GAAGTGAAAGGGAACTCTTTTGATAAAATCGGTTTGcacataaaagaaaa
acatctaaATTAGCCACAGAGTGGTACAATATTAGAAGTTTTAGTTACAA
TTTTacaataattgaaaaatttgccTGCATGCCAAATCGTCTTCCAAAAT
AGCCACTTCAAGTGGTTCAGGCCTAAAAtgagttttgaattttaaaattt
gaatccTTGGTCTTTAACCaagctttaaaaaaagttaatctGGAAGTAAT
ATTATTATCAACTTGGGTTACCATTCTAATATAAATAGGGTATAAGAAGC
CTCTGATTTGGTgctttgatttcaattttgtaTAGTTAGTTACAGTAGGG
ATATCGTAGGGGTAAGATTGTTatgttgaaaagaaataattctacatgaa
ttttattttcttgcagcaagaacaaacaaaaatatattataaattGAATA
CATTAAACACACATAAAAAATGGTAAGTTTACGTACAAATTTCAGTTTCT
GGGTCATTCCACgaatttcttttctttggtcaaggttttttgacatttaa
aaTTCCAGGCTCGATAAGTACGCTTTTGATTTAACTTGTTGGCATCACAA
TTTTGAGGGAAAAAGGTAGCACTCTATGTACATTGTGTTGGTAAGAAGGA
TTCCATAAACCTGGTCAACTATCGTGGCAAAATATCTTTATTGCTGAATA
AATGAAGCAATCCAATGGTTTCGTTCACAAGTAATGTATGTTATGAGTTG
TAACTCTCCAATTCTTTCTTCTTAAAAATTCTTTCAGGGGCCAAAGAAAA
AAGGAGGGAAGAAATCTGCCAAAGCAAAGGCACCCACAATCGTTGATGGA
ATCAGTACAGAAGAAATGACTAAAGAACAGGTTTGTTATAAAAGAATTTA
AGATGgaacaaattttgacaaaaatatttgtttagaacaAAAAGAGAACT
CCTGTTACAATAATACAGTTGTTTGTGGGATAAAGATTATAGAAACTGAA
CCTCTACAGGATCTTTGTAAAAACTCCCTTCTTTGTCAAATTTAGCTAAA
AAGAACTATCTGCTGGTGTCCAAATGCAATAGTAAGGTTTTATCATGTTT
GATCATTTCTTAACAGCTTGAAGAATACATTGTAAGACTACGTGAGGAAC
TGGACAGAGAACGTGANGATCATTTCTTAACAGCTTGAAGAATACATTGT
AAGACTACGTGAGGAACTAGACAGAGAACGTGAGGAAAGGAATTATTTTC
AACTGGAACGTGACAAGGTCAATACATTTTGGGAAATCACCAAGAGACAG
TATGAGGAACGGAAAGCAGATCTACGGAACAAAGAACGTGAAATGGAAGA
AGCTGAGGAGAGACATCAAGTGGAAATCAAAGTTTATAAACAAAAAGTCA
AACATCTTCTCTATgaacatcaaaataatattacaGAACTAAAAGCAGAG
AGTATGTTATATTAACTTTTGTTTGGTAGAGTCACTATGTTCCCACCATG
CATAGTGTGTAGAGAGTTAAGAACCTCCCCCTatgtttatttcatcccca
atACCCATCTTCCCCTCtgtaatgaaatcttttttacaaaaaatccgTCT
cgaaggaaaatttttctatgTACTACCAAAATGGTGAAAAAGTACAAAGT
AATGAAGTCACGAGCCAACAATTTCACAAAATGACAAGCGTTTTTATATT
AACAACCGTGAACATAAACAGACCGTGACCATTTTTATATGATTGAATTA
ACCAAATTTCCAAAcctaatttttttaaccttgatCTCCCCCTACATTCC
CACCTCCCCCAAAAGTCTTTTTGGCAAATCTTGGTACCCCCAGAAAGGCC
TCCAAAAAGTTGGCATCCCTCTATTAAAAAGGTGGTATAAACTATCCCAT
GGTTACCGTTATCGAGTATATTTTCTGCGTTGCTTGTAGTAAACTACCTT
GAGTTGactttgtattttaaagacCCACTTTTTATGGGTAAATATCATTT
AAAAACAGGATTTATTGCAAGTTCTtaccaaggacacttgtatagcgcta
tacaagtgtccttgttcttacagtagagtctctttaactcgaagtTTTAC
AAGTTGAATACCTCctaaactcgaacaagttttatggtccctccAGTTAA
CAATGTTTCATTAGTCTTACTCCATTACTGGAACagatttgtgttccccg
tgagtgttcgagttatgaaaacTCCGtgagtgttcgagttatgaaaacTC
CGtgagtgttcgagttatgaagactctAATGTATATATTTATTCGTTTTC
TATTAAGATGCTGTTGCATTGAAGTTAGCACAAGATGATTACAATGACAA
CGAATCAGAACTTCGAAAAGATAAACGAAATCTTAAAGTGGAACTCAAAG
AACAAGAACTTTCAAATGAAGATCTATTAAAAACACTAATTAGGGtttgt
attttgaaaattctgatgTTTTTAATGTATTGGTTTAAATGTTATTAGTT
TCGAACTGTCTCTTATCCAATAGTCAAACTTGGTCAATAATTGACATGAT
TCTTTGGTTTTCTTGTTTCCCTTGTAATAATAAGTTATGTATTTCGGGAT
ATTTTTATCTTGAGAAACTTCCAACTTAAGGTATTTCCCTACGTCTACCA
ACCTGTAGGTATCAAGTAGTCTATTGACAAATGACTTACACAATGCATAT
TTTGATTGTTGAATTGTTTAGAAAAAAGATGAACAGATCACAGCGTTACG
TAATGATTTCGAACGACAAGCAAAAGGtattcaatgttttctttcGTTAC
AAGTTGAAAAACTAGGAAAAGATGTATTTTTGCAGCTAGTTATTTAAATC
TCTTAACTTTCAGATCTTTTGTAGATAACAAAAGCCTGGGTAAAAGCCTC
ACATCTCAGATATCCTCTTGCACAAGCTCGTCATTTCCATTTGGTAATAC
AGTATTTATAAGCTAACTGCTACTTTTAAGGCAACCTTATGAAAGTGCAA
AGTTAGTAAGTGTCTTTTACACATGGTTTTTCCACTTTCAACAATATTTA
CACGGCTCATTTTATTCATTTCGTCTGCCAGAAATCGAATCAAAATACGA
GCGTAAAATGCGTATGTTACGTGACGAACTGGAATTACGACGTAAGACGG
AGATTCACGAGGTTGAAGAACGTAAGAACAGTCAGATCAACACGTTGATG
AAGAACCACGAGAAGGCATTCAGTGATATCAAGAACTATTATAATGACAT
CACACTCAATAATCTGGCACTTATTAACTCGCTGAAGGTAAATAAATAGG
ATCTTATCTACAATCGGCANGATCAACACGTTGATGAAGAACCACGAGAA
GGCATTCAGTGATATCAAGAACTATTATAATGACATCACACTCAATAATC
TGGCACTTATTAACTCGCTGAAGGTAAATAAATAATCTACAATCGGCACC
CAAATATTtagcacaaaaggggaattccctcaaaactttaaaacggCAAG
TGATtattaagtgctttaaagtacggtCAGAAAGTAGagtttaactctga
gttttaacattagacttaaggtTTACGACCTTAgaatctcaggatctaaa
agctcaaaaatgtttcaatatgaCTGAGAACATAggctggaagccactta
acccctcccaaatcaaaaaattccctGAAACAAAGTACTGAAATTGTAAT
TATTGCCCGAGCACTGATTGTAGAGCGATTGTCCTGGTTCCTCAAAACGA
TTAAATGTGATGCTAGCTAGTACCTTCTTGGACATAATAATCCTCTCGGT
ACTTCATGTGTTACTGAGAACTCATGTTTGCTTTTGAAAAGCTTGAATTC
TCCACACTGAGTAttatcttaaggaaaaggtttACATCAAGAGAAGCTTA
CTTTTAGAGTctggcaaatctttaaaaatcaaaatgtaagCATCATATCA
TGTATAACATTTTCACACCTTTtgaattacacattttttttatagatgtc
caaaaatttttgaagtcttcggatgCTCTTTTTGAGTCATTTTGTGATAT
TGTTGTGCAACTTCATAAGGAATGTGTGTTTTAGAGTTCGCGAAACCTTA
aaattattcttaacattttggccaccgaagccTTGTATCCTTATACAGGT
TGCTcttgtaaaaataaaacgtcTATTATGGTCTTTTTTCTGATCTTGTC
TCTTACCTTTCGATACACAGGAACAAGTAGAAGAGATGCGTAAGAAGGAA
GAGCGTTTAGAGAAGCAAATGAACGAAGTGATGACTGAGAATCGACGCCT
CATTGAACCTCTTCAAAAAGCTAAAGAAGAAGTTCAAGAATTACAAAAAC
AGGTATCCGGGTTTTTAGCAAATATCTTAGTGAAGGATAAagatattttg
gaaaatttcggAACACTAGCTTATTACACAACTAGATATGTcgaatttct
aaactttttggcTTATGATATTACAGTAATATGAGTCACAGCAAAAAGTT
TAATGTGACATCCTTGCCGAAATAATTTAAATGAAGCTTTGAATATATTA
TCATTGTGTTTCAGCTCGCGAATTACGAAAAAGACAAAGCTTCATTACAA
AGCGCCAAAGCAAGACTTCGCGTACAAGAACAAGAGCTCGGAAAATTACA
ATGGGAGCATGAAGTTCTTCGACAACGTTTCGAACAAACACAGAACGAAC
GTGATGAATTATATAATAAATTCGTGACCGCCATACATGAAGTGCAACAG
AAGAGTAACTTCAAAAATTTGTTGTTGGAAAAGAAATTGGGTGCTCTTGC
TGATACCCTTGAGAAGAAGGTATGCGGTTTGTTTTTGTCTTTCAGAGATT
CGAAAAGTCGTAAGCACAATATACTCGGAAcagttcattttttgaaaagc
gtTATGCATCAGTTTTCAGTAAagtttttacatttctttttattatttaa
ttatttgcTTTTGCTTATAAAATTTTCTTAGAGCCTGAGCAGGCCTCCCA
CACTGCACTATATTCTTTAAATGCTTTTATCTTTAAAGTAAATTTTTATG
TCTAGCCTAAAAGATGCCACGGTATTTTTAGTCCCCTTATCATTTCAATG
CCGGAAGACATTCTACCAATTCATTTTAACCATTTGCGTTCTTAGGAAGC
ACAATTGAATGAAGTATTATCAGCATCCAATCTCGATCCAACTGCATTGA
CAGTCGTCACTAGAAAACTCGAGGTAAGTGGTTCGCGAAGGTATAGTCAT
TTTTCTATCGTTTTTTATGTGTCATAATTTATGCTAATTAAGGTAAACTG
CACGACAgtgctttcaaaaaatagttaAAATAGTCTTTTGAACCTCCTTG
ggataataaaattttacattttaattttttttttcttttatttatcatCC
GATTCCTTTGTGGCCGGCTCAGTCGGTAGCATTCAATCTCCCAGGACTTG
CTCcaataaaaaagggaatagaCTCTCTCTCTGCCGGTAGCCACTACatg
cagtagcgtagacaagaggggccAAAAATTTGTgttggagagcagatttt
tataacacagtaattatctttttatattatgaatagataattgctgtatc
ataaaaatctgctctcctacacaaatgtTGCGCCCTTGTCTACGCTGCTG
GGATGCACTAGATGAATATATTTACTTTACTTTATCTTACTCTTGAGTTC
TTCTTATTTAGGATGTATTGGACTCGAAGAACAGCGCCATTAAAGATCTT
CAATATGAACTTGCTCGTGTTTGCAAGGTAAGCTAAATTGTAACCCTTTT
CGTATGGAATTTTTAGGGGTATTTGTAATTATTGAGtggtcaaaaattaa
aaataaagaatgtATATATGAAATAGGCTTTTCCTTTGGCCTTACTTTGC
CAGAAAAACCCTAATTAATTAGGGATTTTAAGATTCTAAGATTGCAATTA
TTAGACTCTAAAGTAGTATgatttttcatatgaaaaataTAAGTTAAGTG
TATGGTTTGAAAGCATTGACAGCGACTGTCGTTTGATTGATAACGAATGT
TTTTTTCTACGTTTTAGGCTCACAACGATTTAATTCGAACGTACGAAGCA
AAATTCCGTTCGTTTGGTGTTCCCACAGAAGAACTCGGTTTCAAACCCCT
TCAAAGCAATGTCACTGGGCAACAACTTGGTAAAGGCGCTGCTGGATTGG
TCGCTCAACCAACTTAACAAATTAGTACCCAAACTCCCTTATTTTGTAAG
AAACAGGTATATatgtaatttattttattattttttaactgCTTGCTTGA
ACTATTATGTAAATTTAAAAGAGCTAAGGAGATTGTATATACgtaacttg
atttttttggaactGATCAATATTATTTTAGTAATGCCAACAAACTTCAA
TTTTTGTTAATTCCTTTTTTAAAAACCATTCGTTTAACAGCTCTCTGTGT
GCATAATTGTAGGGATGGTTGGAATAAGCAAGGGGGTGGATTGGTACTTT
GGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009235	XLOC_009235	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000241	supercontig	sc0000241:112260..118762 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.49117	2.34552	1.9939	2.09345	54.2731	44.2147	10.768	13.1827	2.82315	2.86927	2.39335	2.40285	0.657007	0.860302	0.439005	0.706679	0.48365	0.82621	0.639214	0.812225	0.830554	0.911509	1.42817	1.56705	33.4333	21.4425	2.41468	1.00566	0.715088	0.679991

Blast

[Close]

BLAST of TCONS_00016523 vs. Swiss-Prot (Human)
Match: GAS8 (Growth arrest-specific protein 8 OS=Homo sapiens GN=GAS8 PE=1 SV=1)

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 330/462 (71.43%), Postives = 400/462 (86.58%), Query Frame = 2

Query:  524 IVDGISTEEMTKEQLEEYIVXXXXXXXXXXXXXNYFQLERDKVNTFWEITKRQYEERKADLXXXXXXXXXXXXXXXXXIKVYKQKVKHLLYEHQNNITELKAENAVALKLAQDDYNDNESELRKDKRNLKVELKEQELSNEDLLKTLIRKKDEQITALRNDFERQAKEIESKYXXXXXXXXXXXXXXXXTEIHEVEERKNSQINTLMKNHEKAFSDIKNYYNDITLNNLALINSLKEQVXXXXXXXXXXXXQMNEVMTENRRLIEPLQKAKEEVQELQKQLANYEKDKASLQSAKARLRVQEQELGKLQWEHEVLRQRFEQTQNERDELYNKFVTAIHEVQQKSNFKNLLLEKKLGALADTLEKKEAQLNEVLSASNLDPTALTVVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDLIRTYEAKFRSFGVPTEELGFKPLQSNVTGQQLGKGAAGLVAQPT 1909
            IVDG++ E+M+KEQ+EE++ R+REELDREREERNYFQLERDK++TFWEIT+RQ EE+KA+LRNK+REMEEAEERHQVEIKVYKQKVKHLLYEHQNN+TE+KAE  V +KLAQ ++   ES LRKD R LKVELKEQEL++E ++K L  K  E+IT +RNDFERQ +EIE+KY++KM+MLRDEL+LRRKTE+HEVEERKN QI+TLM+ HE+AF+DIKNYYNDITLNNLALINSLKEQ+E+MRKKE+ LE++M EV  +N+RL +PLQKA+EE+ E+QKQLANYE+DK  L   KARL+V+E+EL  LQWEHEVL QRF + Q ERDELY KF  AI EVQQK+ FKNL+LE+KL AL+  +EKKE Q NEVL+ASNLDP ALT+V+RKLEDVL+SKNS IKDLQYELA+VCKAHNDL+RTYEAK  +FG+P + +GFKPL++ V GQ LG+G AGLV  PT
Sbjct:   17 IVDGLAPEDMSKEQVEEHVSRIREELDREREERNYFQLERDKIHTFWEITRRQLEEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNNLTEMKAEGTVVMKLAQKEHRIQESVLRKDMRALKVELKEQELASEVVVKNLRLKHTEEITRMRNDFERQVREIEAKYDKKMKMLRDELDLRRKTELHEVEERKNGQIHTLMQRHEEAFTDIKNYYNDITLNNLALINSLKEQMEDMRKKEDHLEREMAEVSGQNKRLADPLQKAREEMSEMQKQLANYERDKQILLCTKARLKVREKELKDLQWEHEVLEQRFTKVQQERDELYRKFTAAIQEVQQKTGFKNLVLERKLQALSAAVEKKEVQFNEVLAASNLDPAALTLVSRKLEDVLESKNSTIKDLQYELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGTPT 478

The following BLAST results are available for this feature:

BLAST of TCONS_00016523 vs. Swiss-Prot (Human)

BLAST of TCONS_00016523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GAS8	0.000e+0	71.43	Growth arrest-specific protein 8 OS=Homo sapiens G...	[more]

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TCONS_00016523 (transcript) - C. hemisphaerica