TCONS_00016518 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016518
Unique Name	TCONS_00016518
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2472

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000241:66181..72242+

transcript sequence

>TCONS_00016518 ID=TCONS_00016518|Name=TCONS_00016518|organism=Clytia hemisphaerica|type=transcript|length=2472bp
TGATGCTCTTGAATAGCTTGTTGATGAtcattaaattttgagtttgatga
aaaattgaaagaaacatAGTCATCGTTTTTTGACATCAGAAGACTTTGGA
TAAGTTTCAGTTTATACACTTTTAGAgtctttatttttataattttagtg
agaattgaaatcattctacAAGCCTTTGGAGACTTTCGGAACTTGTAATG
AAGAGATGGAGTCTtttattttggatattttgtcaaattcaagGTGCATT
TCAAACGCCAGTTTCAAGGCCTAGATCAATCACAATCGAATCCTCACAAT
CGACATTAAACTCCATCAGTAGAATCCAACTGATTAGAAGTACCTCATCA
CCAGTCAAAACAACTGCTCAATTAAACTCTACCAAGAGATGCAATGACAA
AACTTGTCAGCAATTTCATCAAAGTCCAACTTGCTCTCGTGTTCTTGGTC
TGACCAATCAGACGACAGTGAAACGAGACTGTCGCTATGGTAACAATGAA
TTGGAATACCATATCTCACGGATTATTCGACTCGTGGATAAAGATAGAAG
TATAGATGGTGCTTGCAGAAATCTAACTCATTGGTTTCTATGCAGCCTTG
TCTTTCCATCATGCAAtgttcaaaatggtagcttgTTACCATGTCAAGAA
ACATGTAACCAAGTGAATGATTGTTATAGCAACATCAAAGAAGTCATTCT
TACTCACGATCGAACTTTTTATGAACATCTGAGAACTGATTGTCTTTTAC
TTGGAAAACAAAAAGATGGAAAATGTGCTTTTAAAGCTCTGCaacGACAA
ATGAATACAAAACCAGCACCCTTCAAATTCGTAACACTCATCGTAATCGG
GACAGTTATTTGGGTTGTCCTCATATTTCTCGTCATCTTGTTTATCATAT
ATCGGAGGCGCCACAATAACGCTTTTTCTAGAACACTATCACTCCACGAA
GTGAAAAATGTCCATTCAAATCGTACAGTCCAAGTTAACGATAATTTCGA
AAACCTTGGCATCACGAATCCTAAATATGAAAGCGTTATCAGTTTGGTGA
CCACACTTGGTTTGACTGTCTTTTCTAAGGAGAATTTGGTTTTTGATCGG
AATCTTGGAGAAGGTGCTTTTGGAAAAGTAGTAAAGTGTCGCACCAAGAG
CATTGATCATCCAAAACTCGGTACTGTAGAAATGGTGGCCGTCAAATATC
TTAAAGAAAACGCGGAAGCTGAGATGGAGCTGACCTTTCAAAGAGAACTA
GAAATATTGTCCAATTTTGATCACCCCAATGTTATACCTCTTGTTGGTGT
TTGTCTCGATAAGTCAGGACCTATGTGTTTGATATTGGAATTCATGAAGT
ATGGTGATTTAAACCAATACATTCGATTGAGGTCCGGATCTTTTCATGCG
GTCGCCGGAAGTTGCGGAGATCTCCCGGACGGTGTTGAATTCCAATCACC
TGAGCTTTCATACCACAACCTTCTGAGTATCACAAGTCAGATTGCTGATG
GGGTAAGTTACCTGGCATCAAAGCGATTTGTCCATCGTGATATCGCTACG
CGGAATATCTTGGTTGGTGAAAATCTGAAAGTGAAAATATCGGATTTTGG
TTTGGCGCATGACATCTATGGATCGGATTATTACAGAGTGAGTTCACAGA
AATTATTACCATTGAGATGGCTTTCACCAGAAGCGTTGAGTCTTGGCAAG
TTTACTGTGTATTCTGATACCTTCGCATTCGGTGTGACCATGTGGGAGAT
CTTCACTTATGGTATGCAACCGTATTATGGATTGAACAATGAAGAGGTTT
GTAATATGATTCGTGGACACAAATTATTGGAACGCCCTTACTGCTGTCCG
CCCAATATATACGCCCTTATGAAGTCATGTTGGAAGTTTGAACCACGTCA
TCGAAAAGACTTGGTATTTATCCGAGATACAATCGACTCTTGGCTTGAAG
CGGATGAAACTTTCATAAGGGAGTCATGGAAACGGTTGATGCTTCCACCG
CTGTCAGAGCGACGACCTACCatcttgaaatcgaaaaaattcaACAGACT
GATCAAAAGAGATATTACTctgtaaaatgaaattttctgtcaGATATACT
TTCCATTTTGCATGCCATCTTTTCAGGAATAATTGAAAGTGTCTTAGAAA
CTCTGCTgccgattttttttccgtataccatAACATAACgacataccgcc
atattttcctgTCTTTACTGTAACAGCGACAATAACATCGTCTAGAATAA
GTGTATCTTTATTGAAAATTACCTTTTTTGTAGTTTTCCCAGTTTGGTCA
AACCTCCATTCATGTCCATTATTAGGACATAGTGGATACCCACTGGGATT
CCACCAAATCATATTTTGTACATAGCTGTTTCAGTTCCTCTTTATAGGTT
AATTTCTTTAGAatattgtattattttttacCATATTGTACATAAGATGT
TCTAACTAAAATATCAATTCCA

Run BLAST on NCBI

transcript from alignment at sc0000241:66181..72242+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016518 ID=TCONS_00016518|Name=TCONS_00016518|organism=Clytia hemisphaerica|type=transcript|length=6062bp|location=Sequence derived from alignment at sc0000241:66181..72242+ (Clytia hemisphaerica)
TGATGCTCTTGAATAGCTTGTTGATGAtcattaaattttgagtttgatga
aaaattgaaagaaacatAGTCATCGTTTTTTGACATCAGAAGACTTTGGA
TAAGTTTCAGTTTATACACTTTTAGAgtctttatttttataattttagtg
agaattgaaatcattctacAAGCCTTTGGAGACTTTCGGAACTTGTAATG
AAGAGATGGAGTCTtttattttggatattttgtcaaattcaaggtagttt
ccttttattttgttgttgtttgataGGATTTGAcaaattgttttaaataa
ttattttaatttaaGTATCTTTTAAACTGAAGATTGTCATCATGTATTGC
ATGCACTGACggggcactgacctttatatatccctggaccaagcaatatc
cacaatctttgatcggagtatATAAAGGTCAACTTTTAATATGAAGTATG
AAGTTTATTATTTAACTCGTTTTCTTTACACAAACTAATAAACCAACAGT
TTGCCATAAATTTAACATCATCTTTTTATTTCTAGGTGCATTTCAAACGC
CAGTTTCAAGGCCTAGGTAAGTATAGCATCCATTAATGGGAGAAATttct
tctgaaaaaaaaattcttctaaAATGAGCATTCGAAGAGTCcatttttct
cttaatacaaTATGATAGTTTTTTAGTTGTTGGAATGATACGAAAAATTA
GATACATACGCAGATAGGCAAAAAGGGGATTTGCTGAGGTATAAGAAAAT
GATGTCATGAAATACAATCTTTTGATAAAAGAGGGGTGCGAATAAATGTT
TAGCACCATCTTAAAAACGAACTAAAAGAGTGATCACGTATAAAATTCGA
AACCTGAAACATTCAACTTTGGATATTCTACTAGTCTCCGTACTTAAATA
CGTAATCTCTCTCGACAGATCAATCACAATCGAATCCTCACAATCGACAT
TAAACTCCATCAGTAGAATCCAACTGATTAGAAGTACCTCATCACCAGTC
AAAACAACTGCTCAATTAAACTCTACCAAGAGATGCAATGACAAAACTTG
TCAGCAATTTCATCAAAGTCCAACTTGCTCTCGTGTTCTTGGTCTGACCA
ATCAGACGACAGTGAAACGAGACTGTCGCTATGGTAACAATGAATTGGAA
TACCATATCTCACGGATTATTCGACTCGTGGATAAAGATAGAAGTATAGA
TGGTGCTTGCAGAAATCTAACTCATTGGTATGCTTGGATCCTTTTTAAGA
AAAGGAGACAACCCGAAGGGTACCCTTTCGATATAGCTACCTATCTGAAT
TTAGGGGAGGGTACCACTCTTTCTCCGTGGGTAACTccatttacccttga
tccttctcatTAATTGCTGAGCGTCAGGCAGAGAAACATGAAGTACCATT
TTTTAActggtacatgtttttttttataagcataacgcttataagcatat
gaaggctcagatttgcagaattcctaagcataacatgagcatatatgtca
ggctaaaatatttttcaagtggtcatttttatctgtttaaaagggtttgg
tagaggtcaagtaaaaaataagacatttcaCGGCTAGCTAACATTCCACT
Gcttccaaaatctgaacaaatttttacaaaatttctgaaatttcattaaa
aacttggctcggggtgaatcataagcatgttcttaagcatataataagca
taaaccatgcctggatgctttgagaacttaagcatgcacgagcctgacca
aggggcatacacttgcttataaaaaaaaacatgtactggTATGACCGTTt
gcacacccctgtctcggagccccggtggaacttttttcctcaatggggac
aaaaatttatattgaaattctagtggggatataaattctattgttctaaa
gttaaaaaatcatattgggatggttttagagtgtcatttaaaaaaattga
atttcgaatggggatgaaatcaaagtaaatttgAGTAGAGCtgaattcca
gggtattttcccaacggggacgaaatttttgccaaattttccagtggggc
ccagtggggctggggtcccagtgggtctgtgacacaacaGGGGTGTGTTT
GCTACCGTAACCGAACCTTCTACCTTTGCACTATCTGATTATCATAATCC
CAGGACTGCTGTTTCAAAAATATAAACTAAATAATCTTTTTTGTAGGTTT
CTATGCAGCCTTGTCTTTCCATCATGCAAtgttcaaaatggtagcttgTT
ACCATGTCAAGAAACATGTAACCAAGTGAATGATTGTTATAGCAACATCA
AAGAAGTCATTCTTACTCACGATCGAACTTTTTATGAACATCTGAGAACT
GATTGTCTTTTACTTGGAAAACAAAAAGATGGAAAATGTGCTTTTAAAGC
TCTGCGTATGCTACCTTTTTATTTCATCCCTTACTGATAACTTCCTATGA
ACTTGATCAAAACCTCAGAAAACATTTTGCTTTTTTGTTATAATTGTTCA
AATTGCAAATACTTTTTAACGTTTAGCTAGAAAATAATAGTATGATACTA
TTTTTTATGTAAGAACCAAATTTAAATCGACATAAACAGACAAAAGGTTT
TACTCAGGATCAGAAAGTATCCCTGAGCCTGCCAACCATCTtgaattctt
attttttgcttgtACTCTCTTCGCTGTGTATATTCTATTCTCACAGCTCA
ATTATTTAGGACAATCTTCTAGATTTTAGCATGATATcgtcttttttctt
tagaacGACAAATGAATACAAAACCAGCACCCTTCAAATTCGTAACACTC
ATCGTAATCGGGACAGTTATTTGGGTTGTCCTCATATTTCTCGTCATCTT
GTTTATCATATATCGGAGGCGCCACAATAACGCTTTTTCTAGAACACTAT
CACTCCACGAAGTGAAAAATGTCCATTCAAATCGTACAGTCCAAGTTAAC
GATAATTTCGAAAACCTTGGCATCACGAATCCTAAATATGAAAGCGTTAT
CAGTTTGGTGACCACACTTGGTTTGACTGTCTTTTCTAAGGAGAATTTGG
TTTTTGATCGGAATCTTGGAGAAGGTGCTTTTGGAAAAGTATGTATATCA
TGGTTGACAGTCCTGCCTTAATGGCCTTAATGCTTTTAATAAATTTGCAA
CAAGCCATATTTTGAATTAGAAatttagatgttttttttcaaagagcACT
TCTTCTTAGGGAAAGCAATTCTGGAATTTATGTTGTTCTTCTTGTCTTGA
CATTTTTTAAAGGGTAGTTATTAAGTGTCTTAAATCACATGCATATTTCA
ATCTTCAGGTAGTAAAGTGTCGCACCAAGAGCATTGATCATCCAAAACTC
GGTACTGTAGAAATGGTGGCCGTCAAATATCTTAAAGAAAACGCGGAAGC
TGAGATGGAGCTGACCTTTCAAAGAGAACTAGAAATATTGTCCAATTTTG
ATCACCCCAATGTTATACCTCTTGTTGGTGTTTGTCTCGATAAGTCAGGA
CCTATGTGTTTGATATTGGGTAAGCATGCACTAAAAACGTAACAAGGGGT
TCAGCCCATTGACTNTCAGGACCTATGTGTTTGATATTGGGTAAGCATGC
ACTAAAAACGTAACAAGGAGTTCAGCCCATTGACTttcaagcccgaaagg
ctagactCATTTTCCTGGATGGAAAATggagctacttatttcccatgcAG
AACGCCCACGcttggtttttacacaaacgctggattgaaaataaaatcta
tcgctagatttcgaaaaaaaagtagtcttcaaaaacaaaggaaccacttg
atacaatccgtcgtcattaatgcggcgcgttctaggcgcgttctggatga
gaaaaaagtggcttcactttttcttgcataTGCGAAAGAtaagagattct
actctagcccttcaggctttaaactcaatggttcagCCCTTTTGGAATGA
GAGTTTTCAGGAAAAACGCTTCAAACCATCATATTCTAAAAATATGAGTG
CATGAGTGAAACGttgagcaaaaatattttactttttaaagtACATTTTT
TCGTCTGGAATAAGTTAGCATAAGTTAATTTTTCAGACGGTTCCGAGTGT
AGTTGCAGGATACATACATTACCAACCAAATGATAAACGTATAAGAATTT
CTTAGGATAACAGGTCATCTGTTTCTGGGTACCAATGTTTCGTTTCCTGG
TTTCTTCTAAAAGTAGCCTATCAACATAtcatccttttgtattttccaGA
ATTCATGAAGTATGGTGATTTAAACCAATACATTCGATTGAGGTCCGGAT
CTTTTCATGCGGTCGCCGGAAGTTGCGGAGATCTCCCGGACGGTGTTGAA
TTCCAATCACCTGAGCTTTCATACCACAACCTTCTGAGTATCACAAGTCA
GATTGCTGATGGGGTAAGTTACCTGGCATCAAAGCGATTTGTCCATCGTG
ATATCGCTACGCGGAATATCTTGGTTGGTGAAAATCTGAAAGTGAAAATA
TCGGATTTTGGTTTGGCGCATGACATCTATGGATCGGATTATTACAGGTT
GGatattatttcttattttagTTCGGTCTTACCAAGGAGGTCtcttctaa
aattcgaatgttCTTCGATNTTTTATGTCTTATTTTAGTTCGGTCTTACC
AAGGAGGTCtcttctaaaattcgaatgttCTTCGATTTCTCAGGTTCTCG
AGATACTAGCGTACTACATATATAACTGGAACGAATAATGATTCACCCCC
TTAACAATCCTGTTATGAAAAACTACTTAAGTAGAAGCCCTGCACTTTAG
GTATTTCATTTGGGTTGTCCTCTTTACATTTTCAACTTTACCAAGATTTT
AGTTCTTTCCGAGCATCCAATGAAATGAATCTCCCAACAACTTCTACATT
ATATCTTAGAGTGAGTTCACAGAAATTATTACCATTGAGATGGCTTTCAC
CAGAAGCGTTGAGTCTTGGCAAGTTTACTGTGTATTCTGATACCTTCGCA
TTCGGTGTGACCATGTGGGAGATCTTCACTTATGGTATGCAACCGTATTA
TGGATTGAACAATGAAGAGGTATTGAAATTAAGTGACTTTGTAAATTGTC
TCCTTTTTACCATAGACCTATTTTTAATACAAGCAGTAATGATATTGTCG
CATAAAGGCCTAATGATCGATCATCATCATGGATTTGATACAATTCTAAT
GAAGTGTACGCTTATAGTCCCTGATGTTGGGAATTATTGATTGGAGCAAA
GGCAAGTGTTTTCTAACGGCAAACACTGAAAATcctttgctgtttttaat
ggAAACTGCTTCGTTATTCCAGCGATTTCCTTGTATGAATTTATGAGATA
TTTTAAGTTTCAATTACATTTCTTTGGATCTTTTAGGTTTGTAATATGAT
TCGTGGACACAAATTATTGGAACGCCCTTACTGCTGTCCGCCCAATATAT
ACGCCCTTATGAAGTCATGTTGGAAGTTTGAACCACGTCATCGAAAAGAC
TTGGTATTTATCCGAGATACAATCGACTCTTGGCTTGAAGCGGATGAAAC
TTTCATAAGGGAGTCATGGAAACGGTTGATGCTTCCACCGCTGTCAGAGC
GACGACCTACCatcttgaaatcgaaaaaattcaACAGACTGATCAAAAGA
GATATTACTctgtaaaatgaaattttctgtcaGATATACTTTCCATTTTG
CATGCCATCTTTTCAGGAATAATTGAAAGTGTCTTAGAAACTCTGCTgcc
gattttttttccgtataccatAACATAACgacataccgccatattttcct
gTCTTTACTGTAACAGCGACAATAACATCGTCTAGAATAAGTGTATCTTT
ATTGAAAATTACCTTTTTTGTAGTTTTCCCAGTTTGGTCAAACCTCCATT
CATGTCCATTATTAGGACATAGTGGATACCCACTGGGATTCCACCAAATC
ATATTTTGTACATAGCTGTTTCAGTTCCTCTTTATAGGTTAATTTCTTTA
GAatattgtattattttttacCATATTGTACATAAGATGTTCTAACTAAA
ATATCAATTCCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009233	XLOC_009233	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000241	supercontig	sc0000241:66181..72242 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203805	0.21403	0.106504	0.0955143	0.317126	0.242244	0.755837	0.924604	1.51266	5.16281	2.4619	1.97857	4.82225	4.26082	5.01188	6.58701	1.22396	1.78529	2.34148	1.77878	0.409258	0.576685	0.296592	0.326843	1.12775	1.91533	0.0967351	0.137651	2.61009	2.82769

Blast

[Close]

BLAST of TCONS_00016518 vs. Swiss-Prot (Human)
Match: MUSK (Muscle, skeletal receptor tyrosine-protein kinase OS=Homo sapiens GN=MUSK PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.947e-74
Identity = 133/303 (43.89%), Postives = 189/303 (62.38%), Query Frame = 3

Query: 1071 FSKENLVFDRNLGEGAFGKVVKCRTKSIDHPKLGTVE---MVAVKYLKENAEAEMELTFQRELEILSNFDHPNVIPLVGVCLDKSGPMCLILEFMKYGDLNQYIRLRSGSFHAVAG-SCGDLPDGVEFQSP---ELSYHNLLSITSQIADGVSYLASKRFVHRDIATRNILVGENLKVKISDFGLAHDIYGSDYYRVSSQKLLPLRWLSPEALSLGKFTVYSDTFAFGVTMWEIFTYGMQPYYGLNNEEVCNMIRGHKLLERPYCCPPNIYALMKSCWKFEPRHRKDLVFIRDTIDSWLEADE 1958
            + + N+ + R++GEGAFG+V + R      P L   E   MVAVK LKE A A+M+  FQRE  +++ FD+PN++ L+GVC     PMCL+ E+M YGDLN++  LRS S H V   S  DL    +  SP    LS    L I  Q+A G++YL+ ++FVHRD+ATRN LVGEN+ VKI+DFGL+ +IY +DYY+ +    +P+RW+ PE++   ++T  SD +A+GV +WEIF+YG+QPYYG+ +EEV   +R   +L  P  CP  +Y LM+ CW   P  R     I   ++   E  E
Sbjct:  570 YPRNNIEYVRDIGEGAFGRVFQARA-----PGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC-AVGKPMCLLFEYMAYGDLNEF--LRSMSPHTVCSLSHSDLSMRAQVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKANENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILSCPENCPVELYNLMRLCWSKLPADRPSFTSIHRILERMCERAE 864

The following BLAST results are available for this feature:

BLAST of TCONS_00016518 vs. Swiss-Prot (Human)

BLAST of TCONS_00016518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MUSK	6.947e-74	43.89	Muscle, skeletal receptor tyrosine-protein kinase ...	[more]

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TCONS_00016518 (transcript) - C. hemisphaerica