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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016510 ID=TCONS_00016510|Name=TCONS_00016510|organism=Clytia hemisphaerica|type=transcript|length=2369bpRun BLAST on NCBI transcript from alignment at sc0000241:4137..21506+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016510 ID=TCONS_00016510|Name=TCONS_00016510|organism=Clytia hemisphaerica|type=transcript|length=17370bp|location=Sequence derived from alignment at sc0000241:4137..21506+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016510 vs. Swiss-Prot (Human)
Match: DJC11 (DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1 SV=2) HSP 1 Score: 404.445 bits (1038), Expect = 8.066e-139 Identity = 217/459 (47.28%), Postives = 313/459 (68.19%), Query Frame = 2
Query: 119 ADTEEEYENSPDYYSILNVRKDATEGEIKNAYRRMCVMYHPDKHSDQKHKEIAEGNFSRIHKAYEVLSTPETRTIYDLYGQKGLDA-GWEVVERKRTAQEIREEYERLQKDAEERRIQQKTNPKGSFTMQINATDLFSKEESDDPYYQDEESLLPNIEIRGMSVNQSIEAPLTTKNTAIITGTMSHSNGNGVGSVNVAMRRLISHKTWAEGEVGVGN--GPTFRCKAFRNLGKKMFGTVSINSNLQQHKLSAGLQAMVARQLTPNTMGYLSWSAGSPSYMTSTIARNTENYSMMAQLQLGKPHSLAMMTYTHKFGPDTKTKV--ALKFGVMGLVFDYGCEHKITSFSRLGAFMSVGQITGVTLKIKLHRHTQTFNFPIMLAETFSPTAVFYGTIAPVLVFFTVKALLIAPMLKEQREQKIKETREKNAKLIAEKRKEAEAIIQVMLPQYQRSVDTEQEK 1480
A +EEE +N DYYS+LNVR++A+ E+K AYRR+C++YHPDKH D + K AE F+ +H+AYEVLS P+TR IYD+YG++GL+ GWEVVER+RT EIREE+ERLQ++ EERR+QQ+TNPKG+ ++ ++ATDLF + D+ Y S P IEI M ++QSIEAPLT +TAI++G++S NGNG GS+N A+RR+ S K W E E G G+ GP F K FRNL + F T + + GL ++AR L NT+GYL W G S M ++I R+T+ LQLG PHS A+++Y HKF D +T+V +LK G G V +YG E KI+ S LGA +SVG GV+LK+KL+R +QT+ FPI L + P+A+FY T+ P++V+F + L+I P L+ Q+E+++++ RE A + +K++EAE+ +++M +R ++ E+ +
Sbjct: 4 ALSEEELDNE-DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDR--YDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESR 459 HSP 2 Score: 109.768 bits (273), Expect = 8.066e-139 Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1
Query: 1477 KTRMTDKSLLGVFDVTVPVQCLVKDSKLLATDATKSQLSGFYDPCIGEDKVLKIKYEFRDALHEVTYKDDEAVRIPKQSHRI 1722
K+R ++K + V DVTVP+QCLVKDSKL+ T+A+K+ L GFYDPC+GE+K LK+ Y+FR LH+V D EA+RIPKQSHRI
Sbjct: 476 KSRKSEK--VKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIPKQSHRI 555 The following BLAST results are available for this feature:
BLAST of TCONS_00016510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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