TCONS_00016506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016506
Unique NameTCONS_00016506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016506 ID=TCONS_00016506|Name=TCONS_00016506|organism=Clytia hemisphaerica|type=transcript|length=413bp
CAAAAAATGGCAAACCAACAAATAATGCATAAcattaaatatttatttaa
catgtttcatttcaaagcacaaagataaaaaaagctATGATATTCTGTGA
TATTAATTGtataaaaaatccatcaaatccACCATCTCACCATCAATCTA
ATTCCTGTCGGGTCTAGTTATTAGAACCTTGCATACagtatttgaaattt
tgtgtaCAATAATCTGTTGAGTGTATCATTAAAACTGTGATTTCTGAGAT
TTCCGATGAATGTTTAGTTTACCCATTCTACAAGTTTATGTCGGGAGCGA
AGGAGTTATGAGTTTTAATTAAGTTTTCAAGCCACTGATCTGAATGGTAA
AGTCTGTCATTCTGAAGCGTAATGTATCAATACTCTGTCCATTGGAAATC
CAAAAGAATTCNN
Run BLAST on NCBI

transcript from alignment at sc0000240:310526..310938

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016506 ID=TCONS_00016506|Name=TCONS_00016506|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0000240:310526..310938 (Clytia hemisphaerica)
NNGAATTCTTTTGGATTTCCAATGGACAGAGTATTGATACATTACGCTTC
AGAATGACAGACTTTACCATTCAGATCAGTGGCTTGAAAACTTAATTAAA
ACTCATAACTCCTTCGCTCCCGACATAAACTTGTAGAATGGGTAAACTAA
ACATTCATCGGAAATCTCAGAAATCACAGTTTTAATGATACACTCAACAG
ATTATTGtacacaaaatttcaaatactGTATGCAAGGTTCTAATAACTAG
ACCCGACAGGAATTAGATTGATGGTGAGATGGTggatttgatggattttt
tataCAATTAATATCACAGAATATCATagctttttttatctttgtgcttt
gaaatgaaacatgttaaataaatatttaatgTTATGCATTATTTGTTGGT
TTGCCATTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009227XLOC_009227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016506-exon-sc0000240-1491911889:310526..310938TCONS_00016506-exon-sc0000240-1491911889:310526..310938Clytia hemisphaericaexon
TCONS_00016506-exon-sc0000240-1510915933:310526..310938TCONS_00016506-exon-sc0000240-1510915933:310526..310938Clytia hemisphaericaexon
TCONS_00016506-exon-sc0000240-1575043694:310526..310938TCONS_00016506-exon-sc0000240-1575043694:310526..310938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:310526..310938 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173911	0	0.47507	0.462704	10.6463	10.5927	21.6281	24.9115	16.6202	24.9246	29.9118	17.9395	21.7926	25.9233	5.99803	4.44695	6.82032	3.35749	42.3208	43.8893	14.5458	17.3574	13.3605	10.9982	2.09607	4.55368	47.0586	33.118	7.84494	5.78046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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