TCONS_00016502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016502
Unique NameTCONS_00016502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016502 ID=TCONS_00016502|Name=TCONS_00016502|organism=Clytia hemisphaerica|type=transcript|length=347bp
CAAAGAATGATTCTGCTATTTCTTCCACTTACCAATGCGGAATCGTCAAA
GAAACGCATCACGGTAATAATAACAAAATTCGTAAAGTGACTGTTCTTTA
CAAAAATGCTAATGAGAAATCGTTTCGTGAAACAACACGTGCTGTCAGAG
AAATGATAGTCATTCATCAAACAGATGAACATGATTTGGTGGATGATCTG
AATAGTGTGTATTCAGCTACAAAATAACTTTTGCATCCTGGTTGGGCCAG
tgcagtgtagctggaacctcaatattccaggattagaaaaagctatacct
gttatcttttttctttaaagaatcaacaagccatcaacatcgataaa
Run BLAST on NCBI

transcript from alignment at sc0000240:275754..276100

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016502 ID=TCONS_00016502|Name=TCONS_00016502|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0000240:275754..276100 (Clytia hemisphaerica)
tttatcgatgttgatggcttgttgattctttaaagaaaaaagataacagg
tatagctttttctaatcctggaatattgaggttccagctacactgcaCTG
GCCCAACCAGGATGCAAAAGTTATTTTGTAGCTGAATACACACTATTCAG
ATCATCCACCAAATCATGTTCATCTGTTTGATGAATGACTATCATTTCTC
TGACAGCACGTGTTGTTTCACGAAACGATTTCTCATTAGCATTTTTGTAA
AGAACAGTCACTTTACGAATTTTGTTATTATTACCGTGATGCGTTTCTTT
GACGATTCCGCATTGGTAAGTGGAAGAAATAGCAGAATCATTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009223XLOC_009223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016502-exon-sc0000240-1491911889:275754..276100TCONS_00016502-exon-sc0000240-1491911889:275754..276100Clytia hemisphaericaexon
TCONS_00016502-exon-sc0000240-1510915933:275754..276100TCONS_00016502-exon-sc0000240-1510915933:275754..276100Clytia hemisphaericaexon
TCONS_00016502-exon-sc0000240-1575043694:275754..276100TCONS_00016502-exon-sc0000240-1575043694:275754..276100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:275754..276100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.46943	5.49925	14.8033	9.50613	5.09707	1.86014	4.13495	2.85242	1.87729	7.68242	1.87756	6.73867	0.941728	5.18079	4.46555	5.3768	2.02595	3.55178	7.03099	2.29461	4.81717	4.24187	2.96356	1.68407	0	1.59161	1.92561	0.443787	0	0.968268
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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