TCONS_00016497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016497
Unique NameTCONS_00016497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016497 ID=TCONS_00016497|Name=TCONS_00016497|organism=Clytia hemisphaerica|type=transcript|length=893bp
TTACTAAATTGTTGGCCATTCTCAGGGCTGGATCTTCAGTtgctttaaaa
aaatgtgtagactCGGTGAGCAAAACGGGACCTTTTTGTGATATGACGTC
AAAAAGAGTGCAAGTTATCGTTTGTGAaaaatgaacaatttttttccTTA
TCAATTCAAACTTTATACTAAATGTGCatgaaagaaatatttaatttgTC
ATATGCGGTCTACATATATCCCAATAATTATAAAGTCGTGCATGTAAAat
gtataaagaaaaataattcaggtaaaaaaaattagtaaaaaaagctaaaa
tataATCTTAAATTTTAGTAGACGCAATAATGGCACAAGGGTTAGTTGTA
ACTTGTCTCTGAGTTCTGTAGAATATGAATGTTTTTGGCGAGTTTTGTAG
AATATGAATGTTTATTCTTTTCTTGGAACAACGATGACAGGACGATCCGA
GTGGTGCAACACATAATCACTAGTGCTTCCCAACAAAGCACGACTGAATG
TACTCAGACCACGTTGCCCCATCACTATCACTGCTGCATCGTTCTTTGCA
GCGATCTCACAAATCAACTGGCCTGGTGAATGATGTGAATCCGTCAGCAA
TACTTTGTAATCACAATTTATGCGATTCACGCAAAAGTCCTTGTATTTGT
TCATCAAAGCATTGCTTTTCTCGACACTCTTCTTGATGGAATGATGATAG
TCTTCTGTGATGGGTATGGAACCAGCCTTCAACCCCATGGAAGGGAGAGA
CGGCATCTGATGGACGTGGATGATACCCACTACGTCACCTGTACGGTGGT
GGTTAGCTGCATACCATTCGAATGCTCGCTCACTTTCATTGCTTTCATCA
ACACAGATGCAATTTAATCGACTCATTCTGTATTTCTTTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00016497-protein

>TCONS_00016497-protein ID=TCONS_00016497-protein|Name=TCONS_00016497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSRLNCICVDESNESERAFEWYAANHHRTGDVVGIIHVHQMPSLPSMGLK
AGSIPITEDYHHSIKKSVEKSNALMNKYKDFCVNRINCDYKVLLTDSHHS
PGQLICEIAAKNDAAVIVMGQRGLSTFSRALLGSTSDYVLHHSDRPVIVV
PRKE
Run BLAST on NCBI

transcript from alignment at sc0000240:97502..98394

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016497 ID=TCONS_00016497|Name=TCONS_00016497|organism=Clytia hemisphaerica|type=transcript|length=893bp|location=Sequence derived from alignment at sc0000240:97502..98394 (Clytia hemisphaerica)
ATTGAAAGAAATACAGAATGAGTCGATTAAATTGCATCTGTGTTGATGAA
AGCAATGAAAGTGAGCGAGCATTCGAATGGTATGCAGCTAACCACCACCG
TACAGGTGACGTAGTGGGTATCATCCACGTCCATCAGATGCCGTCTCTCC
CTTCCATGGGGTTGAAGGCTGGTTCCATACCCATCACAGAAGACTATCAT
CATTCCATCAAGAAGAGTGTCGAGAAAAGCAATGCTTTGATGAACAAATA
CAAGGACTTTTGCGTGAATCGCATAAATTGTGATTACAAAGTATTGCTGA
CGGATTCACATCATTCACCAGGCCAGTTGATTTGTGAGATCGCTGCAAAG
AACGATGCAGCAGTGATAGTGATGGGGCAACGTGGTCTGAGTACATTCAG
TCGTGCTTTGTTGGGAAGCACTAGTGATTATGTGTTGCACCACTCGGATC
GTCCTGTCATCGTTGTTCCAAGAAAAGAATAAACATTCATATTCTACAAA
ACTCGCCAAAAACATTCATATTCTACAGAACTCAGAGACAAGTTACAACT
AACCCTTGTGCCATTATTGCGTCTACTAAAATTTAAGATtatattttagc
tttttttactaattttttttacctgaattatttttctttatacatTTTAC
ATGCACGACTTTATAATTATTGGGATATATGTAGACCGCATATGAcaaat
taaatatttctttcatGCACATTTAGTATAAAGTTTGAATTGATAAggaa
aaaaattgttcattttTCACAAACGATAACTTGCACTCTTTTTGACGTCA
TATCACAAAAAGGTCCCGTTTTGCTCACCGagtctacacatttttttaaa
gcaACTGAAGATCCAGCCCTGAGAATGGCCAACAATTTAGTAA

Coding sequence (CDS) from alignment at sc0000240:97502..98394

>TCONS_00016497 ID=TCONS_00016497|Name=TCONS_00016497|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000240:97502..98394 (Clytia hemisphaerica)
ATGAGTCGATTAAATTGCATCTGTGTTGATGAAAGCAATGAAAGTGAGCG
AGCATTCGAATGGTATGCAGCTAACCACCACCGTACAGGTGACGTAGTGG
GTATCATCCACGTCCATCAGATGCCGTCTCTCCCTTCCATGGGGTTGAAG
GCTGGTTCCATACCCATCACAGAAGACTATCATCATTCCATCAAGAAGAG
TGTCGAGAAAAGCAATGCTTTGATGAACAAATACAAGGACTTTTGCGTGA
ATCGCATAAATTGTGATTACAAAGTATTGCTGACGGATTCACATCATTCA
CCAGGCCAGTTGATTTGTGAGATCGCTGCAAAGAACGATGCAGCAGTGAT
AGTGATGGGGCAACGTGGTCTGAGTACATTCAGTCGTGCTTTGTTGGGAA
GCACTAGTGATTATGTGTTGCACCACTCGGATCGTCCTGTCATCGTTGTT
CCAAGAAAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009218XLOC_009218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016497-proteinTCONS_00016497-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016497-exon-sc0000240-1491911889:97502..98394TCONS_00016497-exon-sc0000240-1491911889:97502..98394Clytia hemisphaericaexon
TCONS_00016497-exon-sc0000240-1510915933:97502..98394TCONS_00016497-exon-sc0000240-1510915933:97502..98394Clytia hemisphaericaexon
TCONS_00016497-exon-sc0000240-1575043694:97502..98394TCONS_00016497-exon-sc0000240-1575043694:97502..98394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:97502..98394 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
110.946	118.407	99.3085	96.4109	40.3594	31.3398	40.3442	45.0115	56.3836	53.9231	46.2959	48.3959	40.6361	38.0095	50.7759	62.1076	56.6146	40.6676	64.2345	66.2359	26.9801	23.9962	37.764	38.334	13.588	17.6437	41.1082	28.3876	41.9106	33.9608
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006015Universal_stress_UspA
IPR014729Rossmann-like_a/b/a_fold
IPR006016UspA
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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