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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016488 ID=TCONS_00016488|Name=TCONS_00016488|organism=Clytia hemisphaerica|type=transcript|length=1561bp
TTCGTCTCTTTATACATTTTTGTTGACAAATTTCTTGTGTTATAAAAACT
TCTTCACCAGTCAAGATGATAGGATTGAATGAACCGCTGGACATTGCATA
CACCACACTGTACATCATCTCTCTCATCGGCAACTTGATCTTCATCTTAT
ACCTGCTGGTGCAACAATTAAAGATATCAGTGGACCGTTTGTTGTTCACG
CAATCCATCGTTCAACTCATCCTCGTCATCCTCGCCGTTCCCTTCGTTCA
CGATGCATGGGTGCAAGAACCTTACCAATTTGGTGACTTTGCTTGCCGTT
TCGTGACGCCGTTACATGATTTGTTCGAATTTTCGCAAGGTTTCATGTAC
GCAGTGATCGGCTGGTTTATCGCACAAAAGTTGAAAGGGGACCAAGAGAT
TAAATGGAAAGTTCTCTCTTCATTGATCGGTTTACATCTCTTATGTATTG
TATTTCTTTTACCGACGTTCGGTGTTTGGCACCTCGTGTATGTCCCTTCC
TCTCAAACACATCATTGCAAAGAGGCATGGTCATATGAAGCTGAAATTAT
GCACCGAATCAGCCGAGTATTTTTATTCGCTATCCCAACAGGCATCGCCT
TATATTATTACATCAAAGGTTTTCGCATCGTGAAATTTATCACCAATTTC
TTGAGCCTCAAAAAGTCGAACGCACGTTAccaaagctttgcaaaagtcaT
TTCAGACGTTGGTCATACTCCCGAATCTCATCTTTGCTTTGGTGAATCAG
AAGAAATGAACTTAGAGATGAACCACTTGTATCAAAAGCATAATAGCATC
TCAACCATTTCAAAAGATGACGTCACCGCCAACATTTCTGTGCAGATCTT
TACCAACGAAGTGGAGATTGATAGGATCGATTCGCAGTCTCCTCTTTGGC
GCGGAAAACCAAAGGCTGGGGAGTACCAAAAGATGGTGGTCTCCATAAAG
TGGTTCCGCTACACTCGCAATCTTTATCAGGCTTTCCTTGTGTCAGTCAT
TTTCTACGCTGTCGCCTCCGCCCCTTACTTCGTTTTTCTTCTCTACACGA
CCGACCGAAAAACCGAGTTTACGAACACGGAAAAGTGGGCTGCTTCTATC
ATCTTTTTTATCCGATACTCCACTTGTTTGGTGAACCCTTGGATTTTCAT
GCTtggtattttcaaatttcgtaAGAGTTTGTTTGGCAAATGTTATCGAC
AGCAACGAGACTTCGTCCTTCTACCGGATTCGGTGAAAGAAGATACTTCG
TGAATATGAAATAATATCAATATGTGCGCCATTTCGCATTACTTCAGGAT
AAATGAATGAGCTGAAATGaatcaatattttaaacaatttaaagTCTGGT
CACCAAGTTCGTAACATAGGGTTTACTGTTATGTTATATGATAAGTACAG
GAAAGTTTACGGAAAAATATATCTACAAACATAGATCGCTGCTTTTTTCT
CCCTTGTCAAAGATTGATGTTCGACAAACCTCTATTGAtagactttttgg
acctacctccgggtgccccggtggaggttctataaattaacccatgtccg
tccgttcgttc Run BLAST on NCBI transcript from alignment at sc0000240:127415..129236- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016488 ID=TCONS_00016488|Name=TCONS_00016488|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0000240:127415..129236- (Clytia hemisphaerica)
TTCGTCTCTTTATACATTTTTGTTGACAAATTTCTTGTGTTATAAAAAGT
GGGCGTGTTGAAATTAATCGTACTGTTAGCCCAGTAAATTGTATATTTTA
ATTCTATAAAGAAATTCGGTTAAGGTGAACGCCTAATTAACAGATTACCT
CGTCTTGTAAAAATTCTTCAACGTTAAGCCAGAGAATGTTGATGTATGAA
GTTTAAACCTTTTAGCGTTTATTCTATGGTCTCGTGTAAATGTCATTTTT
TTGTGGAAAAGAGGTTGATAACACCTCATAACAACACCTCGCTTCTCTTC
TTCTTTTAGCTTCTTCACCAGTCAAGATGATAGGATTGAATGAACCGCTG
GACATTGCATACACCACACTGTACATCATCTCTCTCATCGGCAACTTGAT
CTTCATCTTATACCTGCTGGTGCAACAATTAAAGATATCAGTGGACCGTT
TGTTGTTCACGCAATCCATCGTTCAACTCATCCTCGTCATCCTCGCCGTT
CCCTTCGTTCACGATGCATGGGTGCAAGAACCTTACCAATTTGGTGACTT
TGCTTGCCGTTTCGTGACGCCGTTACATGATTTGTTCGAATTTTCGCAAG
GTTTCATGTACGCAGTGATCGGCTGGTTTATCGCACAAAAGTTGAAAGGG
GACCAAGAGATTAAATGGAAAGTTCTCTCTTCATTGATCGGTTTACATCT
CTTATGTATTGTATTTCTTTTACCGACGTTCGGTGTTTGGCACCTCGTGT
ATGTCCCTTCCTCTCAAACACATCATTGCAAAGAGGCATGGTCATATGAA
GCTGAAATTATGCACCGAATCAGCCGAGTATTTTTATTCGCTATCCCAAC
AGGCATCGCCTTATATTATTACATCAAAGGTTTTCGCATCGTGAAATTTA
TCACCAATTTCTTGAGCCTCAAAAAGTCGAACGCACGTTACCAAAGCTTT
GCAAAAGTCATTTCAGACGTTGGTCATACTCCCGAATCTCATCTTTGCTT
TGGTGAATCAGAAGAAATGAACTTAGAGATGAACCACTTGTATCAAAAGC
ATAATAGCATCTCAACCATTTCAAAAGATGACGTCACCGCCAACATTTCT
GTGCAGATCTTTACCAACGAAGTGGAGATTGATAGGATCGATTCGCAGTC
TCCTCTTTGGCGCGGAAAACCAAAGGCTGGGGAGTACCAAAAGATGGTGG
TCTCCATAAAGTGGTTCCGCTACACTCGCAATCTTTATCAGGCTTTCCTT
GTGTCAGTCATTTTCTACGCTGTCGCCTCCGCCCCTTACTTCGTTTTTCT
TCTCTACACGACCGACCGAAAAACCGAGTTTACGAACACGGAAAAGTGGG
CTGCTTCTATCATCTTTTTTATCCGATACTCCACTTGTTTGGTGAACCCT
TGGATTTTCATGCTTGGTATTTTCAAATTTCGTAAGAGTTTGTTTGGCAA
ATGTTATCGACAGCAACGAGACTTCGTCCTTCTACCGGATTCGGTGAAAG
AAGATACTTCGTGAATATGAAATAATATCAATATGTGCGCCATTTCGCAT
TACTTCAGGATAAATGAATGAGCTGAAATGAATCAATATTTTAAACAATT
TAAAGTCTGGTCACCAAGTTCGTAACATAGGGTTTACTGTTATGTTATAT
GATAAGTACAGGAAAGTTTACGGAAAAATATATCTACAAACATAGATCGC
TGCTTTTTTCTCCCTTGTCAAAGATTGATGTTCGACAAACCTCTATTGAT
AGACTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGGTTCTATAAATTA
ACCCATGTCCGTCCGTTCGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016488-exon-sc0000240-1575043694:129189..129236 | TCONS_00016488-exon-sc0000240-1575043694:129189..129236 | Clytia hemisphaerica | exon |
| TCONS_00016488-exon-sc0000240-1575043694:127415..128927 | TCONS_00016488-exon-sc0000240-1575043694:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016488-exon-sc0000240-1510915933:129189..129236 | TCONS_00016488-exon-sc0000240-1510915933:129189..129236 | Clytia hemisphaerica | exon |
| TCONS_00016488-exon-sc0000240-1510915933:127415..128927 | TCONS_00016488-exon-sc0000240-1510915933:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016488-exon-sc0000240-1491911889:129189..129236 | TCONS_00016488-exon-sc0000240-1491911889:129189..129236 | Clytia hemisphaerica | exon |
| TCONS_00016488-exon-sc0000240-1491911889:127415..128927 | TCONS_00016488-exon-sc0000240-1491911889:127415..128927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:127415..129236 - |
Blast
The following BLAST results are available for this feature:
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