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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016423 ID=TCONS_00016423|Name=TCONS_00016423|organism=Clytia hemisphaerica|type=transcript|length=995bp
aaaacaaataacaACATACTTCATCAAAGATGCCATCTATCTCACCAAAT
AAGTCATTGAACGATTCCAAAGCTGGCGTTGCCAACAAATTATTACAACT
TCCAGTGGCTCGTGTCAAGACGATCATGAAAAGTTCACCTGATCTTGGAA
ATGTCAGCTCGGAGGCTTATTTCCTGATCACTAAAGCAACAGAATGTTTT
GTTCAATATTTAGCACAAGAAGCTCACAAGAACTCAAAAGAATGTGATGA
AGTGGATTATAAACATTTATCTAACATTGTTCTCACTGATGACAGTTTGG
AGTTCTTAGAAGaAATCATCccacaaaaaatcaaagtcaaagaCTACTGG
AAACTAACTGGCTACAACCCAGACCTCCAACGAAAAACACCTACAAAACA
AACAAGACCTGACGCCATTGTTATCGATGATGATTGAACGTTTCTGATTG
GACATCGATGATGTAATCCTACTCATTAACCAATCATAATACTTCAAAAT
ACAATTCGTTTATTTGGACTTGGGATTGGTTAAATATGCTTCAAAATATC
GCCTTGAGCAATATAACTTAAAAAGTTGTATTTGAAAACGAAAATCTACG
AAGACATTTGACTgttatgaaagatttttttccaatGTCGACATTATAAT
TCCATTTTTATAAACCTGCATTTGAGTTTTACAGGGCGTACCAACAAGTA
TGAATTTCCATTGGGCGTTTTCAAGGTGCATTTATTTAtggtattttttt
gaaaagatttcatAACAGCACCACATTTCCAACGGTGGTAGGAAACTTGT
ACTATTTTTTAATCATAGGACTATTTATGTATAATTTATtgagtcagttt
tttttaaatgacgaTTTAGGAATTTTTGATAACTTGTTATAGATTCATAC
AGTTTCATGCAGACGTATTTTCTTTGCACCCACTACTACAGGGCTCCCAG
ATGTCCCAATTCCGTCCTGGTTTACAGATCTTTACTAAATTTAGA Run BLAST on NCBI transcript from alignment at sc0000237:366976..368743+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016423 ID=TCONS_00016423|Name=TCONS_00016423|organism=Clytia hemisphaerica|type=transcript|length=1768bp|location=Sequence derived from alignment at sc0000237:366976..368743+ (Clytia hemisphaerica)
aaaacaaataacaACATACTTCATCAAAGATGCCATCTATCTCACCAAAT
AAGTCATTGAACGATTCCAAAGCTGGCGTTGCCAACAAATTATTACAACT
TCCAGTGGCTCGTGTCAAGACGATCATGAAAAGTTCACCTGATCTTGGAA
ATGTCAGCTCGGAGGCTTATTTCCTGATCACTAAAGCAACAGAATGTTTT
GTTCAATATTTAGCACAAGAAGCTCACAAGAACTCAAAAGAATGTGATGA
AGTGGATTATAAACATTTATGTGAGTCAAATTTCACTCTTTCTGTTGAAG
TTGGATTACTGATTAGGATTTTCTCTTGGAGCTTAAGAATTTTCTAGtaa
ttttgagagtttggaatatgtgattttttcatttcttgataGTCAAAAAA
GGAATTCAATTTTCAGGCAGAATGTTCTTGTgatgttcttaatacgcttt
taatgtttctttacttaaaaactgAAGCTAgatttaaaatctgttaaaat
cagtactttcttaGTAGCTCCTAAAATCTGAGGCTCATATTGTTATTtct
cttaatttgttcttaatttgttcttaggttttggccaattttcagcctcg
tgttcttataataagttacttttttcttttgtttgacaGCTAACATTGTT
CTCACTGATGACAGTTTGGAGTTCTTAGAAGGTATGATGATGTCAGCATT
TATTTCATAAACTTCCCTATGATATCAGAAAGTACGTCGGAAATATACGA
AATTCTAGTGTGAACTTTAATTGGGATGAGCTAGAAATTCTTTTTATGGT
AAGCCAAACGTTGGGAAAGGAAATCTCGATGATGATAGTTTCTTTAAGAT
TCTCTAAAAGTCTCTTTTCTCATAGTTTATGGGAGAAAGCAGGGGGAGAT
CCAGCAGTCTTTTGAAAAGGGTGCAACTAAAAATTTGCGGTTTTTCGAAG
CTCGTACTTTTTGGAGAAAGGCTGGGGTGGTTCGATCAATTTCCCTAACT
CATTTTCTTAAAACTCGAACGGCATTTCTTCCTCGTCTGCTTTGGTTCTC
TTTAAatctaaaatcttttttttttttctctctagaAATCATCccacaaa
aaatcaaagtcaaagaCTACTGGAAACTAACTGGCTACAACCCAGACCTC
CAACGAAAAACACCTACAAAACAAACAAGACCTGACGCCATTGTTATCGA
TGATGATTGAACGTTTCTGATTGGACATCGATGATGTAATCCTACTCATT
AACCAATCATAATACTTCAAAATACAATTCGTTTATTTGGACTTGGGATT
GGTTAAATATGCTTCAAAATATCGCCTTGAGCAATATAACTTAAAAAGTT
GTATTTGAAAACGAAAATCTACGAAGACATTTGACTgttatgaaagattt
ttttccaatGTCGACATTATAATTCCATTTTTATAAACCTGCATTTGAGT
TTTACAGGGCGTACCAACAAGTATGAATTTCCATTGGGCGTTTTCAAGGT
GCATTTATTTAtggtatttttttgaaaagatttcatAACAGCACCACATT
TCCAACGGTGGTAGGAAACTTGTACTATTTTTTAATCATAGGACTATTTA
TGTATAATTTATtgagtcagttttttttaaatgacgaTTTAGGAATTTTT
GATAACTTGTTATAGATTCATACAGTTTCATGCAGACGTATTTTCTTTGC
ACCCACTACTACAGGGCTCCCAGATGTCCCAATTCCGTCCTGGTTTACAG
ATCTTTACTAAATTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016423-exon-sc0000237-1491911889:366976..367245 | TCONS_00016423-exon-sc0000237-1491911889:366976..367245 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1510915933:366976..367245 | TCONS_00016423-exon-sc0000237-1510915933:366976..367245 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1575043694:366976..367245 | TCONS_00016423-exon-sc0000237-1575043694:366976..367245 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1491911889:367615..367656 | TCONS_00016423-exon-sc0000237-1491911889:367615..367656 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1510915933:367615..367656 | TCONS_00016423-exon-sc0000237-1510915933:367615..367656 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1575043694:367615..367656 | TCONS_00016423-exon-sc0000237-1575043694:367615..367656 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1491911889:368061..368743 | TCONS_00016423-exon-sc0000237-1491911889:368061..368743 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1510915933:368061..368743 | TCONS_00016423-exon-sc0000237-1510915933:368061..368743 | Clytia hemisphaerica | exon |
| TCONS_00016423-exon-sc0000237-1575043694:368061..368743 | TCONS_00016423-exon-sc0000237-1575043694:368061..368743 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:366976..368743 + |
Blast
BLAST of TCONS_00016423 vs. Swiss-Prot (Human)
Match: CHRC1 (Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.217e-16 Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 3
Query: 75 GVANKLLQLPVARVKTIMKSSPDLGNVSSEAYFLITKATECFVQYLAQEA--HKNSKECDEVDYKHLSNIVLTDDSLEFLEEIIPQKIKVKDYWKL 356
G +L+ LP++R++ IMKSSP++ +++ EA L KATE FVQ LA + H + KE + Y L+N ++ +FL +I+P+KI Y K+
Sbjct: 11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKM 106
The following BLAST results are available for this feature:
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