TCONS_00016390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016390
Unique NameTCONS_00016390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016390 ID=TCONS_00016390|Name=TCONS_00016390|organism=Clytia hemisphaerica|type=transcript|length=259bp
CTTTTCTTTTCACTGAGTTCTTTAAATTCTCTTCTCCCGATGTATTTTAA
TTCGAAGAAATTACCCGGTATGTCGATTCTCATGAGGAAAGTTTTTCCTT
GATCAGGTGTCCACCACTCGTCGGTTTTCAACTGATTGCTCGACCTAATC
CAATcataattcaaaatttcttggtTTTTCACAGCTCGGGTGTATGATAT
AAACTTAAAAGGTACATCTAAATCCTGAACTCCTTGTTTAGCAACCattt
gtttgtgtt
Run BLAST on NCBI

transcript from alignment at sc0000233:182446..182704

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016390 ID=TCONS_00016390|Name=TCONS_00016390|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at sc0000233:182446..182704 (Clytia hemisphaerica)
aacacaaacaaatGGTTGCTAAACAAGGAGTTCAGGATTTAGATGTACCT
TTTAAGTTTATATCATACACCCGAGCTGTGAAAAaccaagaaattttgaa
ttatgATTGGATTAGGTCGAGCAATCAGTTGAAAACCGACGAGTGGTGGA
CACCTGATCAAGGAAAAACTTTCCTCATGAGAATCGACATACCGGGTAAT
TTCTTCGAATTAAAATACATCGGGAGAAGAGAATTTAAAGAACTCAGTGA
AAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009152XLOC_009152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016390-exon-sc0000233-1491911889:182446..182704TCONS_00016390-exon-sc0000233-1491911889:182446..182704Clytia hemisphaericaexon
TCONS_00016390-exon-sc0000233-1510915933:182446..182704TCONS_00016390-exon-sc0000233-1510915933:182446..182704Clytia hemisphaericaexon
TCONS_00016390-exon-sc0000233-1575043694:182446..182704TCONS_00016390-exon-sc0000233-1575043694:182446..182704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:182446..182704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.898856	0	1.71387	0.80225	1.12335	0.695724	2.02586	0	16.845	13.8108	3.78479	5.68632	7.00509	3.58999	35.4269	28.916	10.9555	4.71504	6.8781	8.33758	29.3407	26.1859	10.9674	15.6062	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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