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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016379 ID=TCONS_00016379|Name=TCONS_00016379|organism=Clytia hemisphaerica|type=transcript|length=3290bpRun BLAST on NCBI protein sequence of TCONS_00016379-protein >TCONS_00016379-protein ID=TCONS_00016379-protein|Name=TCONS_00016379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MAEGKEEKEQVDSRNAKFSSSSIYGAQYLLTFFILGGAWVVAFFSRLFAVRun BLAST on NCBI transcript from alignment at sc0000233:339186..366547- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016379 ID=TCONS_00016379|Name=TCONS_00016379|organism=Clytia hemisphaerica|type=transcript|length=27362bp|location=Sequence derived from alignment at sc0000233:339186..366547- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000233:339186..366547- >TCONS_00016379 ID=TCONS_00016379|Name=TCONS_00016379|organism=Clytia hemisphaerica|type=CDS|length=43470bp|location=Sequence derived from alignment at sc0000233:339186..366547- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016379 vs. Swiss-Prot (Human)
Match: STT3B (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Homo sapiens GN=STT3B PE=1 SV=1) HSP 1 Score: 1115.91 bits (2885), Expect = 0.000e+0 Identity = 557/755 (73.77%), Postives = 634/755 (83.97%), Query Frame = 3
Query: 339 GAQYLLTFFILGGAWVVAFFSRLFAVVRFESIIHEFDPWFNYRATHHLVNNGFYNFLNWFDERAWFPLGRIVGGTVYPGLMVTAGALHWILNTLHFTVHIRDVCVFLAPIFSGLTSISTYFLTKEMWNDRAGLFAACFIAIAPGYISRSVAGSFDNEGIAIFALQFTYFLWIRSVKNGSVFWSLCAALSYFYMVSAWGGYVFIINLIPLHVFALLLMGRFNSKVYTSYSVFYITGLVLSMQIPFVGFQPIRTSEHMAAAGVFALLQGYGFLKYLRDRMSRSEFMHLFNVAIIGIAGLVFLAVVGLTYAGYVAPWSGRFYSLYDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCVFPFGLWTVIKNINNERVFIILYAVSAVYFAGVMVRLMLTLTPVVCMLAAIGFSTTLDNYLNDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTETAAPSTGSSQSNQPAGMDALASHXXXXXXXXXXXXXXXFAVHCTWVTSNAYSSPSIVLATTNYDGSRNILDDFREAYYWLRQNTPDDARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYDIMRSLNVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTPQGEFRVDRSGSPILLNCLMYKLCYYRFGELKLDHRAPSGYDRTRNAEIGNKDIKLTHLEEAYTTEHWLVRIYRVKPLKSRESSSMKQRLXXXXXXXXXXXXXXXXXXXGHVKNKM 2603
G Q LL+F IL AW+ F SRLFAV+RFESIIHEFDPWFNYR+THHL ++GFY FLNWFDERAW+PLGRIVGGTVYPGLM+TAG +HWILNTL+ TVHIRDVCVFLAP FSGLTSIST+ LT+E+WN AGL AACFIAI PGYISRSVAGSFDNEGIAIFALQFTY+LW++SVK GSVFW++C LSYFYMVSAWGGYVFIINLIPLHVF LLLM R++ +VY +YS FYI GL+LSMQIPFVGFQPIRTSEHMAAAGVFALLQ Y FL+YLRDR+++ EF LF + + AG VFL+V+ LTY GY+APWSGRFYSL+DTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVC FP GLW IKNIN+ERVF+ LYA+SAVYFAGVMVRLMLTLTPVVCML+AI FS ++YL D+ ++ E K+ + + A + Q + L ++K +V MLMLM+LM+FAVHCTWVTSNAYSSPS+VLA+ N+DG+RNILDDFREAY+WLRQNT + ARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAY IMR+L+VDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDI+ESDYFTPQGEFRVD++GSP LLNCLMYK+ YYRFGE++LD R P G+DRTRNAEIGNKDIK HLEEA+T+EHWLVRIY+VK +RE+ K R+T+I KY SKKT K G++KNK+
Sbjct: 67 GWQSLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGDDMKRENPPVEDSSDEDDKRNQGNLY--------DKAGKVRKHATEQEKTEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYKIMRTLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIRESDYFTPQGEFRVDKAGSPTLLNCLMYKMSYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRETLDHKPRVTNIFPKQKYLSKKTTKRKRGYIKNKL 813 The following BLAST results are available for this feature:
BLAST of TCONS_00016379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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