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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016347 ID=TCONS_00016347|Name=TCONS_00016347|organism=Clytia hemisphaerica|type=transcript|length=1898bpRun BLAST on NCBI protein sequence of TCONS_00016347-protein >TCONS_00016347-protein ID=TCONS_00016347-protein|Name=TCONS_00016347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp MAAARWSSINQKSEALQDQVFKLIGPRCVALSTAVAELHLLMRTQYGVDYRun BLAST on NCBI transcript from alignment at sc0000233:45181..65682+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016347 ID=TCONS_00016347|Name=TCONS_00016347|organism=Clytia hemisphaerica|type=transcript|length=20502bp|location=Sequence derived from alignment at sc0000233:45181..65682+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000233:45181..65682+ >TCONS_00016347 ID=TCONS_00016347|Name=TCONS_00016347|organism=Clytia hemisphaerica|type=CDS|length=13260bp|location=Sequence derived from alignment at sc0000233:45181..65682+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016347 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 1.253e-29 Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 1
Query: 1126 RVKQL-DSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELME-QNESLVDALKIERIGHRRKIIRNLSQLLDKENEDGKNGQEKAKNNERSKTESGPPDELLCPITQELMTDPVIVADGYTYERTSITQWFETGNHRSPMTNLPLKNKDLVPNRSLKDAINRHL 1611
++KQ + W+ EDV WL L++ +F+ + IDG EL+ ESL D LKIE +G R K++R + +L + K K+ SG PDE +CPIT+ELM DPVI +DGY+YE+ ++ W SPMTNL L + L PNR+LK AINR L
Sbjct: 324 QLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEEL-----------RTKVKS-----LSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471 The following BLAST results are available for this feature:
BLAST of TCONS_00016347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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