TCONS_00016299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016299
Unique NameTCONS_00016299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016299 ID=TCONS_00016299|Name=TCONS_00016299|organism=Clytia hemisphaerica|type=transcript|length=3752bp
TTTATAACAACcaaagttcataaactttatcACACTTTAGTAACCAACCA
ATAATATCTTTACTGCAAAACCACCGAATGCTGTTACCATGTAAAATTGG
TTGTTACTCACCATTCACAATAGTTGGACATCAACCAACAGGAtcacttc
tttatttaattattcgactagaagaacaatgttaacaatatctttggaac
tttaaagaattggaaggtaaatggacccctcatttttcttctgatggtta
tggctttccattaaacttggtttggtattctgcaATTTCCTCTGACCACC
CTGATTTTAATGacagtacagtcaagtatcaatatttgaggtattatgaa
aatcgctactttttgccgtaatcgctttcgtttttaacataaggtcttag
caacgggtaccccaggcatagttacggggcattgagaaaaaatcttgaca
tagaatttcaaaaagattcacactATCATATTCTGCATTACAAAATACAt
ctgttctatgttgggtttttttctcggtgttttgtaggcttaattatcgt
catgcaaagtaaataaaaccccctggaaatctttaggttttgataagcga
aatacttacatactattgtttacttttcaggtattcatccaatcagaatt
tgttagcgagcggtatttatccaattggaatcgcgtaacacgaaagcgaa
agtgaaagtgaaggcggaaatatattcttttttcaacgtgatttgcatat
attagaacagaaagaaacaccaatttgtcaaagatttgtttaaacccacc
ttattttttgttgagtatcgcctaaatttatcgaTCAAAAGAATATACTT
TTaaacattaatcttaaaatctcttttattgttaagtatccccCAAGGGG
CTCAACGCCGAAAGGAAAATAAGCGGGCGGAACCACCCTCGTAGTTTAAT
CtcgggattgaaaaaacctggagaaaaccttttccgtacaAATAATGTAg
gctaaggaattttaaaacacggcatttaaagtgaaacaagaaaGCGGAGA
AGTGGcgattggaggtttttgtaattagacagcatgacaaaggtttatat
tttagcataacaaagacaaactcaggaggtaaggtaaattgcattttgac
tgcttttaactgtttttctaataaagaatatcatatcttaaaacttgact
tcactgaaaGGTACTCCAAAAGCTTTGTtcaattaaatcaaaaaattggt
gatgtttatttgtttgaagtaaacatagaaaattttccaaatcccccatt
tcgattaatgcgatgaaaaatgaaacttttctatgtttcacttttttgca
cttattcttcaaaatgaaaatattaaagatttgaaagaaagttcttcttt
tatacAATGATTTAATGatactttgttgacaatctaactctcgcatcaaa
ttcccgctttcttcagtaaattaaattgaagatgagaaaaaacctaggTC
ACGGATCACAGATTGTTTAGTACCAGCCAAACCTGACCCCCTGTTGTcag
tcaaaagacatgcaatGAAACTGCCAGTAACAGAAAAATCCTTCTTCTAA
GCTAAGATAGCTACATACATATTGACCCGCTTATTTTGGTTTCAAGAATG
GCAAATGTCTGATCTGTGGACGTTATCCAGAAAGTGAATTTGGCCACAGG
GCACCTTAGGTAGCCCGTTGTGCAAATTCATGTTATTCctcttttctcaa
aaaaagcaGATCCTCTGTTTTCcttacctttttttaaagtcagaaaatca
tGACACGTTTCTACACAGTTGACTGTCTTCTGGAACAACACTAAGCTTTT
GAAGCTTACTAGATGCGAAAGATGCTACTTTGAAACCACATTCATGACCC
ATTTTGAAATATGTAAATTCAGTTGGATTCATTGACTGAACTGGTGCTTT
CCAGAAATTCTACAGTGTAGGTCATTCCAAATACCAAGTTTATCATCATT
CCCAGAGtttatttgtcatttttgaaCCTTACTGTTCTTTTAAAGTTGTT
CATGTGAAACTGAAGAATGTACTTTAAATAAAATctgttttaaaagtttg
aaagaagaagaaaagacaatttctttaaaaaacattcttttaaaaaatag
aaCTGATTTCCATGTCTCTTGTTTATgtattttaaaaaagaaatctaaaa
attacaaagtctTCTCAATGAATATCATTTAGGAAATCTAGTTTGATTTT
TAAACAATTCTATTCATATGATTATCCTATGCATTGGTCAAGCTGGTTGT
CAAATTGGAGAACTAATCATTGAACAAGAAGCCAAATTCAATCCATCCAG
TGGTTATTACTCAGCACTTTTTGTGGATGTTGACAACAAAATAATTAACG
TGCTGAATGAATCAAAAGTGgtttcaaaatttgtcaaaaaggTTAATTTG
ATAAAAGGAGATAGTGGATGTTTAGACAAGTTTACAAAGAAAGATAAAAC
TGAAAAGtttattcaaaatattcttgatcACTTGAGAGATGAGATCATTC
AACAAAATAATGATTGCTGTAAGTTCTTTTCATTTGGATTCTAGTTGAGA
AACATCAGACTTTTCCAGGAGTAAAATCAAACTTGTGGCTCTTATTAGAT
TGcttttaaagataaaaacttttcgattttggagTTAATAATTTCATCTT
TTTACTTTTAGTTTGATCTTATTTCAGATATAGCGTCCGTTCACAGTTTG
ATTGGATCCACTAGCTGTTCCCTGTTGAAAATTATATCAGAGGAAGTTTC
AGAACGATTTGAAAATGTCAAGATTGTATCGTTTACAACTTTGCCTTTCA
AAGAAGGAGAATCTTCATTTCAATACTACAATGCGATGCTTTCGCTGAAT
GTGTTAAGGTGAAAAAGgTACTTTAGCCTATGTTTCCTAATCAGTAATGA
CCATATGCTCGAAGAGGTTTCAAAGATGAGGTCATCAAAGAAGTCAATCA
GTTTTTCTGAAATAAATCAAATCATTGCAAGTCAAATTCACATGAtatta
aaaacacttgacagaCCCAGTCAAAAAAGGAGGCATCTGAGTTCAGATAG
AGATACCATACCAGAAAAAgacccaaaaattttaaatgcgATTGCAGATT
TTTCCTCCTTCAATTGCCTCTATTTTATGAGCATTGGAATGGTTGAGATA
AACAATGATTTGGGTTATAAGAAATCGTTAACAAAACTTTCACGGAAATG
TGTCAGTTACTTGAAGCTTGGGAATCAAAAGGAAAAGCCAGCTTTACACA
GAGCTCTTTTGTTTTGTGAAGCAACTGATGAAAATCAACACATTCTTAGT
GCTTTCTCAGAGTCATTTTCAACAAGATTTCAGGTTCAAGCCAAAAGTGG
AGAAACATTTAGAGTCTATGAGAATACTCGAGGTATTGCAGGTAGATCTC
AATTTGGTTCTGGAGAAAAAACATTATGTTCAGTATGCTTCCAAAGCCAT
CATTTAGTTCGATACATGACCATGATATCTGAAAAAGTTCAATTGATGCT
TCTTCACAATGCTTTTGTCCAATATTATTCACAAAGGGGCCGAAAAGGGA
AGAAAGCAACGGCCAATGGAAAGCACAATTTGGAAAAGGAATATGCAAGT
TTTATGAATCATTTGTCAATGTTTACTTCTGACTGATGATCTGGTAGTTC
TTAGAAAAAGATGTCCAAATTAgtttatgtttttattgtagATAAAAGTT
TT
Run BLAST on NCBI

transcript from alignment at sc0000232:92483..99175-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016299 ID=TCONS_00016299|Name=TCONS_00016299|organism=Clytia hemisphaerica|type=transcript|length=6693bp|location=Sequence derived from alignment at sc0000232:92483..99175- (Clytia hemisphaerica)
TTTATAACAACCAAAGTTCATAAACTTTATCACACTTTAGTAACCAACCA
ATAATATCTTTACTGCAAAACCACCGAATGCTGTTACCATGTAAAATTGG
TTGTTACTCACCATTCACAATAGTTGGACATCAACCAACAGGATCACTTC
TTTATTTAATTATTCGACTAGAAGAACAATGTTAACAATATCTTTGGAAC
TTTAAAGAATTGGAAGGTAAATGGACCCCTCATTTTTCTTCTGATGGTTA
TGGCTTTCCATTAAACTTGGTTTGGTATTCTGCAATTTCCTCTGACCACC
CTGATTTTAATGACAGTACAGTCAAGTATCAATATTTGAGGTATTATGAA
AATCGCTACTTTTTGCCGTAATCGCTTTCGTTTTTAACATAAGGTCTTAG
CAACGGGTACCCCAGGCATAGTTACGGGGCATTGAGAAAAAATCTTGACA
TAGAATTTCAAAAAGATTCACACTATCATATTCTGCATTACAAAATACAT
CTGTTCTATGTTGGGTTTTTTTCTCGGTGTTTTGTAGGCTTAATTATCGT
CATGCAAAGTAAATAAAACCCCCTGGAAATCTTTAGGTTTTGATAAGCGA
AATACTTACATACTATTGTTTACTTTTCAGGTATTCATCCAATCAGAATT
TGTTAGCGAGCGGTATTTATCCAATTGGAATCGCGTAACACGAAAGCGAA
AGTGAAAGTGAAGGCGGAAATATATTCTTTTTTCAACGTGATTTGCATAT
ATTAGAACAGAAAGAAACACCAATTTGTCAAAGATTTGTTTAAACCCACC
TTATTTTTTGTTGAGTATCGCCTAAATTTATCGATCAAAAGAATATACTT
TTAAACATTAATCTTAAAATCTCTTTTATTGTTAAGTATCCCCCAAGGGG
CTCAACGCCGAAAGGAAAATAAGCGGGCGGAACCACCCTCGTAGTTTAAT
CTCGGGATTGAAAAAACCTGGAGAAAACCTTTTCCGTACAAATAATGTAG
GCTAAGGAATTTTAAAACACGGCATTTAAAGTGAAACAAGAAAGCGGAGA
AGTGGCGATTGGAGGTTTTTGTAATTAGACAGCATGACAAAGGTTTATAT
TTTAGCATAACAAAGACAAACTCAGGAGGTAAGGTAAATTGCATTTTGAC
TGCTTTTAACTGTTTTTCTAATAAAGAATATCATATCTTAAAACTTGACT
TCACTGAAAGGTACTCCAAAAGCTTTGTTCAATTAAATCAAAAAATTGGT
GATGTTTATTTGTTTGAAGTAAACATAGAAAATTTTCCAAATCCCCCATT
TCGATTAATGCGATGAAAAATGAAACTTTTCTATGTTTCACTTTTTTGCA
CTTATTCTTCAAAATGAAAATATTAAAGATTTGAAAGAAAGTTCTTCTTT
TATACAATGATTTAATGATACTTTGTTGACAATCTAACTCTCGCATCAAA
TTCCCGCTTTCTTCAGTAAATTAAATTGAAGATGAGAAAAAACCTAGGTC
ACGGATCACAGATTGTTTAGTACCAGCCAAACCTGACCCCCTGTTGTCAG
TCAAAAGACATGCAATGAAACTGCCAGTAACAGAAAAATCCTTCTTCTAA
GCTAAGATAGCTACATACATATTGACCCGCTTATTTTGGTTTCAAGAATG
GCAAATGTCTGATCTGTGGACGTTATCCAGAAAGTGAATTTGGCCACAGG
GCACCTTAGGTAGCCCGTTGTGCAAATTCATGTTATTCCTCTTTTCTCAA
AAAAAGCAGATCCTCTGTTTTCCTTACCTTTTTTTAAAGTCAGAAAATCA
TGACACGTTTCTACACAGTTGACTGTCTTCTGGAACAACACTAAGCTTTT
GAAGCTTACTAGATGCGAAAGATGCTACTTTGAAACCACATTCATGACCC
ATTTTGAAATATGTAAATTCAGTTGGATTCATTGACTGAACTGGTGCTTT
CCAGAAATTCTACAGTGTAGGTCATTCCAAATACCAAGTTTATCATCATT
CCCAGAGTTTATTTGTCATTTTTGAACCTTACTGTTCTTTTAAAGTTGTT
CATGTGAAACTGAAGAATGTACTTTAAATAAAATCTGTTTTAAAAGTTTG
AAAGAAGAAGAAAAGACAATTTCTTTAAAAAACATTCTTTTAAAAAATAG
AACTGATTTCCATGTCTCTTGTTTATGTATTTTAAAAAAGAAATCTAAAA
ATTACAAAGTCTTCTCAATGAATATCATTTAGGAAATCTAGTTTGATTTT
TAAACAATTCTATTCATATGATTATCCTATGCATTGGTCAAGCTGGTTGT
CAAATTGGAGAACTAATCATTGAACAAGAAGCCAAATTCAATCCATCCAG
TGGTTATTACTCAGCACTTTTTGTGGATGTTGACAACAAAATAATTAACG
TGCTGAATGAATCAAAAGTGGTTTCAAAATTTGTCAAAAAGGTTAATTTG
ATAAAAGGAGATAGTGGATGTTTAGACAAGTTTACAAAGAAAGATAAAAC
TGAAAAGTTTATTCAAAATATTCTTGATCACTTGAGAGATGAGATCATTC
AACAAAATAATGATTGCTGTAAGTTCTTTTCATTTGGATTCTAGTTGAGA
AACATCAGACTTTTCCAGGAGTAAAATCAAACTTGTGGCTCTTATTAGAT
TGCTTTTAAAGATAAAAACTTTTCGATTTTGGAGTTAATAATTTCATCTT
TTTACTTTTAGTTTGATCTTATTTCAGATATAGCGTCCGTTCACAGTTTG
ATTGGATCCACTAGCTGTTCCCTGTTGAAAATTATATCAGAGGAAGTTTC
AGAACGATTTGAAAATGTCAAGATTGTATCGTTTACAACTTTGCCTTTCA
AAGAAGGAGAATCTTCATTTCAATACTACAATGCGATGCTTTCGCTGAAT
GTGTTAAGGTGAAAAAGGTTTTCTCTGTGTTACTGTAGTGATTGTTGACT
TTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTTC
GTTAGTTAGTTAGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAAN
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TCTCCTTTTTTAGGTACTTTAGCCTATGTTTCCTAATCAGTAATGACCAT
ATGCTCGAAGAGGTTTCAAAGATGAGGTCATCAAAGAAGTCAATCAGTTT
TTCTGAAATAAATCAAATCATTGCAAGTCAAATTCACATGATATTAAAAA
CACTTGACAGACCCAGTCAAAAAAGGAGGCATCTGAGTTCAGATAGAGAT
ACCATACCAGAAAAAGACCCAAAAATTTTAAATGCGATTGCAGATTTTTC
CTCCTTCAATTGCCTCTATTTTATGAGCATTGGAATGGTTGAGATAAACA
ATGATTTGGGTTATAAGAAATCGTTAACAAAACTTTCACGGAAATGTGTC
AGTTACTTGAAGCTTGGGAATCAAAAGGAAAAGCCAGCTTTACACAGAGC
TCTTTTGTTTTGTGAAGCAACTGATGAAAATCAACACATTCTTAGTGCTT
TCTCAGAGTCATTTTCAACAAGATTTCAGGTTCAAGCCAAAAGTGGAGAA
ACATTTAGAGTCTATGAGAATACTCGAGGTAATTATGTTACTGTGTTATT
TTATCTTTTGCTATTTATATGATCTTTCTATTGCAACACAAATAAACTTC
ATGATAATAAATACAGTAGGAAATGTTGCCTGTATGCTGTTTTTAACCAC
TTTATTAACTTTTTAGGTATTGCAGGTAGATCTCAATTTGGTTCTGGAGA
AAAAACATTATGTTCAGTATGCTTCCAAAGCCATCATTTAGTTCGATACA
TGACCATGATATCTGAAAAAGTTCAATTGATGCTTCTTCACAATGCTTTT
GTCCAATATTATTCACAAAGGGGCCGAAAAGGGAAGAAAGCAACGGCCAA
TGGAAAGGTTGGTTGCAACATTTTTCTTGTAAATCTTGAAATCACACCTT
GATATAGTACTTTCTANTAATGCTTTTCTCCAATATTATTCACAAAGGGG
CCGAAAAGGGAAGAAAGCATTGGCTAATGGAAAGGTTAGTTGCAATATTT
TTCTTGTAAATCTTGAAATCACACCTTGATATAGTACTTTCTAGCGGTTT
TTTATTACGTTTCTGTAGCACATTTCTATGTTGGAATTAGTGGTTTTATT
CTTTACATTTTTAGCACAATTTGGAAAAGGAATATGCAAGTTTTATGAAT
CATTTGTCAATGTTTACTTCTGACTGATGATCTGGTAGTTCTTAGAAAAA
GATGTCCAAATTAGTTTATGTTTTTATTGTAGATAAAAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009095XLOC_009095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016299-exon-sc0000232-1575043694:96259..99175TCONS_00016299-exon-sc0000232-1575043694:96259..99175Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1575043694:93198..93712TCONS_00016299-exon-sc0000232-1575043694:93198..93712Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1575043694:92869..93059TCONS_00016299-exon-sc0000232-1575043694:92869..93059Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1575043694:92483..92611TCONS_00016299-exon-sc0000232-1575043694:92483..92611Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1510915933:96259..99175TCONS_00016299-exon-sc0000232-1510915933:96259..99175Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1510915933:93198..93712TCONS_00016299-exon-sc0000232-1510915933:93198..93712Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1510915933:92869..93059TCONS_00016299-exon-sc0000232-1510915933:92869..93059Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1510915933:92483..92611TCONS_00016299-exon-sc0000232-1510915933:92483..92611Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1491911889:96259..99175TCONS_00016299-exon-sc0000232-1491911889:96259..99175Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1491911889:93198..93712TCONS_00016299-exon-sc0000232-1491911889:93198..93712Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1491911889:92869..93059TCONS_00016299-exon-sc0000232-1491911889:92869..93059Clytia hemisphaericaexon
TCONS_00016299-exon-sc0000232-1491911889:92483..92611TCONS_00016299-exon-sc0000232-1491911889:92483..92611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:92483..99175 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00161555	0.00143749	1.13242	0.876215	0.00207906	0.00136849	0.00138381	2.52391e-07	0.000416699	0.00076847	0.00147449	0.00117282	0.000455792	2.22797e-05	0.00052105	0.49788	0.000559908	0.00042388	0.000869003	0.000559435	0.96378	0.000994375	0.842595	0.000612336	0.00174867	0.00248508	0.000739039	0.00132903	0.00122751	0.00168838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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