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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016295 ID=TCONS_00016295|Name=TCONS_00016295|organism=Clytia hemisphaerica|type=transcript|length=3734bp TTTATAACAACcaaagttcataaactttatcACACTTTAGTAACCAACCA ATAATATCTTTACTGCAAAACCACCGAATGCTGTTACCATGTAAAATTGG TTGTTACTCACCATTCACAATAGTTGGACATCAACCAACAGGAtcacttc tttatttaattattcgactagaagaacaatgttaacaatatctttggaac tttaaagaattggaaggtaaatggacccctcatttttcttctgatggtta tggctttccattaaacttggtttggtattctgcaATTTCCTCTGACCACC CTGATTTTAATGacagtacagtcaagtatcaatatttgaggtattatgaa aatcgctactttttgccgtaatcgctttcgtttttaacataaggtcttag caacgggtaccccaggcatagttacggggcattgagaaaaaatcttgaca tagaatttcaaaaagattcacactATCATATTCTGCATTACAAAATACAt ctgttctatgttgggtttttttctcggtgttttgtaggcttaattatcgt catgcaaagtaaataaaaccccctggaaatctttaggttttgataagcga aatacttacatactattgtttacttttcaggtattcatccaatcagaatt tgttagcgagcggtatttatccaattggaatcgcgtaacacgaaagcgaa agtgaaagtgaaggcggaaatatattcttttttcaacgtgatttgcatat attagaacagaaagaaacaccaatttgtcaaagatttgtttaaacccacc ttattttttgttgagtatcgcctaaatttatcgaTCAAAAGAATATACTT TTaaacattaatcttaaaatctcttttattgttaagtatccccCAAGGGG CTCAACGCCGAAAGGAAAATAAGCGGGCGGAACCACCCTCGTAGTTTAAT CtcgggattgaaaaaacctggagaaaaccttttccgtacaAATAATGTAg gctaaggaattttaaaacacggcatttaaagtgaaacaagaaaGCGGAGA AGTGGcgattggaggtttttgtaattagacagcatgacaaaggtttatat tttagcataacaaagacaaactcaggaggtaaggtaaattgcattttgac tgcttttaactgtttttctaataaagaatatcatatcttaaaacttgact tcactgaaaGGTACTCCAAAAGCTTTGTtcaattaaatcaaaaaattggt gatgtttatttgtttgaagtaaacatagaaaattttccaaatcccccatt tcgattaatgcgatgaaaaatgaaacttttctatgtttcacttttttgca cttattcttcaaaatgaaaatattaaagatttgaaagaaagttcttcttt tatacAATGATTTAATGatactttgttgacaatctaactctcgcatcaaa ttcccgctttcttcagtaaattaaattgaagatgagaaaaaacctaggTC ACGGATCACAGATTGTTTAGTACCAGCCAAACCTGACCCCCTGTTGTcag tcaaaagacatgcaatGAAACTGCCAGTAACAGAAAAATCCTTCTTCTAA GCTAAGATAGCTACATACATATTGACCCGCTTATTTTGGTTTCAAGAATG GCAAATGTCTGATCTGTGGACGTTATCCAGAAAGTGAATTTGGCCACAGG GCACCTTAGGTAGCCCGTTGTGCAAATTCATGTTATTCctcttttctcaa aaaaagcaGATCCTCTGTTTTCcttacctttttttaaagtcagaaaatca tGACACGTTTCTACACAGTTGACTGTCTTCTGGAACAACACTAAGCTTTT GAAGCTTACTAGATGCGAAAGATGCTACTTTGAAACCACATTCATGACCC ATTTTGAAATATGTAAATTCAGTTGGATTCATTGACTGAACTGGTGCTTT CCAGAAATTCTACAGTGTAGGTCATTCCAAATACCAAGTTTATCATCATT CCCAGAGtttatttgtcatttttgaaCCTTACTGTTCTTTTAAAGTTGTT CATGTGAAACTGAAGAATGTACTTTAAATAAAATctgttttaaaagtttg aaagaagaagaaaagacaatttctttaaaaaacattcttttaaaaaatag aaCTGATTTCCATGTCTCTTGTTTATgtattttaaaaaagaaatctaaaa attacaaagtctTCTCAATGAATATCATTTAGGAAATCTAGTTTGATTTT TAAACAATTCTATTCATATGATTATCCTATGCATTGGTCAAGCTGGTTGT CAAATTGGAGAACTAATCATTGAACAAGAAGCCAAATTCAATCCATCCAG TGGTTATTACTCAGCACTTTTTGTGGATGTTGACAACAAAATAATTAACG TGCTGAATGAATCAAAAGTGgtttcaaaatttgtcaaaaaggTTAATTTG ATAAAAGGAGATAGTGGATGTTTAGACAAGTTTACAAAGAAAGATAAAAC TGAAAAGtttattcaaaatattcttgatcACTTGAGAGATGAGATCATTC AACAAAATAATGATTGCTGTAAGTTCTTTTCATTTGGATTCTAGTTGAGA AACATCAGACTTTTCCAGGAGTAAAATCAAACTTGTGGCTCTTATTAGAT TGcttttaaagataaaaacttttcgattttggagTTAATAATTTCATCTT TTTACTTTTAGTTTGATCTTATTTCAGATATAGCGTCCGTTCACAGTTTG ATTGGATCCACTAGCTGTTCCCTGTTGAAAATTATATCAGAGGAAGTTTC AGAACGATTTGAAAATGTCAAGATTGTATCGTTTACAACTTTGCCTTTCA AAGAAGGAGAATCTTCATTTCAATACTACAATGCGATGCTTTCGCTGAAT GTGTTAAGCCTATGTTTCCTAATCAGTAATGACCATATGCTCGAAGAGGT TTCAAAGATGAGGTCATCAAAGAAGTCAATCAGTTTTTCTGAAATAAATC AAATCATTGCAAGTCAAATTCACATGAtattaaaaacacttgacagaCCC AGTCAAAAAAGGAGGCATCTGAGTTCAGATAGAGATACCATACCAGAAAA AgacccaaaaattttaaatgcgATTGCAGATTTTTCCTCCTTCAATTGCC TCTATTTTATGAGCATTGGAATGGTTGAGATAAACAATGATTTGGGTTAT AAGAAATCGTTAACAAAACTTTCACGGAAATGTGTCAGTTACTTGAAGCT TGGGAATCAAAAGGAAAAGCCAGCTTTACACAGAGCTCTTTTGTTTTGTG AAGCAACTGATGAAAATCAACACATTCTTAGTGCTTTCTCAGAGTCATTT TCAACAAGATTTCAGGTTCAAGCCAAAAGTGGAGAAACATTTAGAGTCTA TGAGAATACTCGAGGTATTGCAGGTAGATCTCAATTTGGTTCTGGAGAAA AAACATTATGTTCAGTATGCTTCCAAAGCCATCATTTAGTTCGATACATG ACCATGATATCTGAAAAAGTTCAATTGATGCTTCTTCACAATGCTTTTGT CCAATATTATTCACAAAGGGGCCGAAAAGGGAAGAAAGCAACGGCCAATG GAAAGCACAATTTGGAAAAGGAATATGCAAGTTTTATGAATCATTTGTCA ATGTTTACTTCTGACTGATGATCTGGTAGTTCTTAGAAAAAGATGTCCAA ATTAgtttatgtttttattgtagATAAAAGTTTT Run BLAST on NCBI transcript from alignment at sc0000232:90703..99175- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016295 ID=TCONS_00016295|Name=TCONS_00016295|organism=Clytia hemisphaerica|type=transcript|length=8473bp|location=Sequence derived from alignment at sc0000232:90703..99175- (Clytia hemisphaerica) TTTATAACAACCAAAGTTCATAAACTTTATCACACTTTAGTAACCAACCA
ATAATATCTTTACTGCAAAACCACCGAATGCTGTTACCATGTAAAATTGG
TTGTTACTCACCATTCACAATAGTTGGACATCAACCAACAGGATCACTTC
TTTATTTAATTATTCGACTAGAAGAACAATGTTAACAATATCTTTGGAAC
TTTAAAGAATTGGAAGGTAAATGGACCCCTCATTTTTCTTCTGATGGTTA
TGGCTTTCCATTAAACTTGGTTTGGTATTCTGCAATTTCCTCTGACCACC
CTGATTTTAATGACAGTACAGTCAAGTATCAATATTTGAGGTATTATGAA
AATCGCTACTTTTTGCCGTAATCGCTTTCGTTTTTAACATAAGGTCTTAG
CAACGGGTACCCCAGGCATAGTTACGGGGCATTGAGAAAAAATCTTGACA
TAGAATTTCAAAAAGATTCACACTATCATATTCTGCATTACAAAATACAT
CTGTTCTATGTTGGGTTTTTTTCTCGGTGTTTTGTAGGCTTAATTATCGT
CATGCAAAGTAAATAAAACCCCCTGGAAATCTTTAGGTTTTGATAAGCGA
AATACTTACATACTATTGTTTACTTTTCAGGTATTCATCCAATCAGAATT
TGTTAGCGAGCGGTATTTATCCAATTGGAATCGCGTAACACGAAAGCGAA
AGTGAAAGTGAAGGCGGAAATATATTCTTTTTTCAACGTGATTTGCATAT
ATTAGAACAGAAAGAAACACCAATTTGTCAAAGATTTGTTTAAACCCACC
TTATTTTTTGTTGAGTATCGCCTAAATTTATCGATCAAAAGAATATACTT
TTAAACATTAATCTTAAAATCTCTTTTATTGTTAAGTATCCCCCAAGGGG
CTCAACGCCGAAAGGAAAATAAGCGGGCGGAACCACCCTCGTAGTTTAAT
CTCGGGATTGAAAAAACCTGGAGAAAACCTTTTCCGTACAAATAATGTAG
GCTAAGGAATTTTAAAACACGGCATTTAAAGTGAAACAAGAAAGCGGAGA
AGTGGCGATTGGAGGTTTTTGTAATTAGACAGCATGACAAAGGTTTATAT
TTTAGCATAACAAAGACAAACTCAGGAGGTAAGGTAAATTGCATTTTGAC
TGCTTTTAACTGTTTTTCTAATAAAGAATATCATATCTTAAAACTTGACT
TCACTGAAAGGTACTCCAAAAGCTTTGTTCAATTAAATCAAAAAATTGGT
GATGTTTATTTGTTTGAAGTAAACATAGAAAATTTTCCAAATCCCCCATT
TCGATTAATGCGATGAAAAATGAAACTTTTCTATGTTTCACTTTTTTGCA
CTTATTCTTCAAAATGAAAATATTAAAGATTTGAAAGAAAGTTCTTCTTT
TATACAATGATTTAATGATACTTTGTTGACAATCTAACTCTCGCATCAAA
TTCCCGCTTTCTTCAGTAAATTAAATTGAAGATGAGAAAAAACCTAGGTC
ACGGATCACAGATTGTTTAGTACCAGCCAAACCTGACCCCCTGTTGTCAG
TCAAAAGACATGCAATGAAACTGCCAGTAACAGAAAAATCCTTCTTCTAA
GCTAAGATAGCTACATACATATTGACCCGCTTATTTTGGTTTCAAGAATG
GCAAATGTCTGATCTGTGGACGTTATCCAGAAAGTGAATTTGGCCACAGG
GCACCTTAGGTAGCCCGTTGTGCAAATTCATGTTATTCCTCTTTTCTCAA
AAAAAGCAGATCCTCTGTTTTCCTTACCTTTTTTTAAAGTCAGAAAATCA
TGACACGTTTCTACACAGTTGACTGTCTTCTGGAACAACACTAAGCTTTT
GAAGCTTACTAGATGCGAAAGATGCTACTTTGAAACCACATTCATGACCC
ATTTTGAAATATGTAAATTCAGTTGGATTCATTGACTGAACTGGTGCTTT
CCAGAAATTCTACAGTGTAGGTCATTCCAAATACCAAGTTTATCATCATT
CCCAGAGTTTATTTGTCATTTTTGAACCTTACTGTTCTTTTAAAGTTGTT
CATGTGAAACTGAAGAATGTACTTTAAATAAAATCTGTTTTAAAAGTTTG
AAAGAAGAAGAAAAGACAATTTCTTTAAAAAACATTCTTTTAAAAAATAG
AACTGATTTCCATGTCTCTTGTTTATGTATTTTAAAAAAGAAATCTAAAA
ATTACAAAGTCTTCTCAATGAATATCATTTAGGAAATCTAGTTTGATTTT
TAAACAATTCTATTCATATGATTATCCTATGCATTGGTCAAGCTGGTTGT
CAAATTGGAGAACTAATCATTGAACAAGAAGCCAAATTCAATCCATCCAG
TGGTTATTACTCAGCACTTTTTGTGGATGTTGACAACAAAATAATTAACG
TGCTGAATGAATCAAAAGTGGTTTCAAAATTTGTCAAAAAGGTTAATTTG
ATAAAAGGAGATAGTGGATGTTTAGACAAGTTTACAAAGAAAGATAAAAC
TGAAAAGTTTATTCAAAATATTCTTGATCACTTGAGAGATGAGATCATTC
AACAAAATAATGATTGCTGTAAGTTCTTTTCATTTGGATTCTAGTTGAGA
AACATCAGACTTTTCCAGGAGTAAAATCAAACTTGTGGCTCTTATTAGAT
TGCTTTTAAAGATAAAAACTTTTCGATTTTGGAGTTAATAATTTCATCTT
TTTACTTTTAGTTTGATCTTATTTCAGATATAGCGTCCGTTCACAGTTTG
ATTGGATCCACTAGCTGTTCCCTGTTGAAAATTATATCAGAGGAAGTTTC
AGAACGATTTGAAAATGTCAAGATTGTATCGTTTACAACTTTGCCTTTCA
AAGAAGGAGAATCTTCATTTCAATACTACAATGCGATGCTTTCGCTGAAT
GTGTTAAGGTGAAAAAGGTTTTCTCTGTGTTACTGTAGTGATTGTTGACT
TTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTTC
GTTAGTTAGTTAGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTTAATTTTGTATTTTT
TCTCCTTTTTTAGGTACTTTAGCCTATGTTTCCTAATCAGTAATGACCAT
ATGCTCGAAGAGGTTTCAAAGATGAGGTCATCAAAGAAGTCAATCAGTTT
TTCTGAAATAAATCAAATCATTGCAAGTCAAATTCACATGATATTAAAAA
CACTTGACAGACCCAGTCAAAAAAGGAGGCATCTGAGTTCAGATAGAGAT
ACCATACCAGAAAAAGACCCAAAAATTTTAAATGCGATTGCAGATTTTTC
CTCCTTCAATTGCCTCTATTTTATGAGCATTGGAATGGTTGAGATAAACA
ATGATTTGGGTTATAAGAAATCGTTAACAAAACTTTCACGGAAATGTGTC
AGTTACTTGAAGCTTGGGAATCAAAAGGAAAAGCCAGCTTTACACAGAGC
TCTTTTGTTTTGTGAAGCAACTGATGAAAATCAACACATTCTTAGTGCTT
TCTCAGAGTCATTTTCAACAAGATTTCAGGTTCAAGCCAAAAGTGGAGAA
ACATTTAGAGTCTATGAGAATACTCGAGGTAATTATGTTACTGTGTTATT
TTATCTTTTGCTATTTATATGATCTTTCTATTGCAACACAAATAAACTTC
ATGATAATAAATACAGTAGGAAATGTTGCCTGTATGCTGTTTTTAACCAC
TTTATTAACTTTTTAGGTATTGCAGGTAGATCTCAATTTGGTTCTGGAGA
AAAAACATTATGTTCAGTATGCTTCCAAAGCCATCATTTAGTTCGATACA
TGACCATGATATCTGAAAAAGTTCAATTGATGCTTCTTCACAATGCTTTT
GTCCAATATTATTCACAAAGGGGCCGAAAAGGGAAGAAAGCAACGGCCAA
TGGAAAGGTTGGTTGCAACATTTTTCTTGTAAATCTTGAAATCACACCTT
GATATAGTACTTTCTANTAATGCTTTTCTCCAATATTATTCACAAAGGGG
CCGAAAAGGGAAGAAAGCATTGGCTAATGGAAAGGTTAGTTGCAATATTT
TTCTTGTAAATCTTGAAATCACACCTTGATATAGTACTTTCTAGCGGTTT
TTTATTACGTTTCTGTAGCACATTTCTATGTTGGAATTAGTGGTTTTATT
CTTTACATTTTTAGCACAATTTGGAAAAGGAATATGCAAGTTTTATGAAT
CATTTGTCAATGTTTACTTCTGACTGATGATCTGGTAGTTCTTAGAAAAA
GATGTCCAAATTAGTTTATGTTTTTATTGTAGATAAAAGTTTTGTGCATT
GTTTTTATTTGTTATTATTATATATTGATAAAAAATGCCAAAAATCTCTC
TTTTCTTCTTCAGTAGGTATCGATTCAGGTATTATATTTTGTCCTAAATT
TCTTGCTCAACAAGATTTCTTTCAATACAAATCCTTCAAATTATGTTTTA
CAGTTCTAACAGCAACAAATAATGATTATTGATGTTGAGGAGATACTGGA
TTTGTCTTTCATCAACCCAAACAACATTTTTGAACAACTGCAAGATACTG
GTGATTTTTACATTCATCAGAGAGCAGTCAATGCTTGGAATTTACTTTCA
AGGGAAAAGGATTATGACAATGCGTGTGCTCAAAGTCAAGTTTTGTTGGA
TAAAACATGGGAACATTTGAATACAGGGTATTGGAAAGACGTCAAGTTAG
TTTGGAGACATTTGTACACATTGGCATCTCTGATGAAAACCTGTAGTTTA
TACTGTCTCAGTGACACACAGAGTGCTTTAAAAGCTTGTGATATGGGCTT
GTTAATGGGTGCACCTATCTTTGATAACGTTCTTGGTAAATTAGCTTCAA
AATTGTCCGAAATTTTAAGAAAAAAGAAAGATGCCGATGATGTTGTGGAA
CCTGTTTCAAAGAAAATAAAGGGTTGCATAGAATATGGAAGAGCCAATTA
TTTACCAACCGATGATGTATCAAAAATTGAAAATCGAATCCAAGAGAAGT
TTTCCATCCCAAAAATTGATAACATATCTCTAATAGAATTTCAAGAGAAC
TATTTAAAGACTGAAACACCTGTTATCATTCAAAATGCTATGAATCACTG
GCCAGCTATGGAAGGTCCGCGAAAGTGGGGGATTGATTATTTGAGAACTG
TTGCCGGATCAAGGACTGTTCCTGTTGAGATAGGTGATAAATATACTTCA
GATAATTGGACACAAACTTTAATGAGTGTTAATGACTTTATTGATAAATA
CATAGCCAATAGGACAAACACAGGATATTTGGCACAACATCAGCTTTTTG
ATCAAGTACCAGAACTAAAAAATGACATTCTGCCACCAGACTATTGTTAT
TTAAGTGATTCTGAGGCTGAGAGACCTATTTTAATGCATGCATGGTTTGG
ACCTACAGGCACTGTCTCACCATTGCATCACGACCCTTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATGATAATAAATACAGTAGGAAATGTTGCCTGTATGCTGTTTT
TAACCACTTTATTAACTTTTTAGGTATTGCAGGTAGATCTCAATTTGGTT
CTGGAGAAAAAACATTATGTTCAGTATGCTTCCAAAGCCATCATTTAGTT
CGATACATGACCATGATATCTGAAAAAGTTCAATTGATGCTTCTTCATAA
TGCTTTTCTCCAATATTATTCACAAAGGGGCCGAAAAGGGAAGAAAGCAT
TGGCTAATGGAAAGGTTGGTTGCAACATTTTTCTTGTAAATCTTGAAATC
ACACCTTGATATAGTACTTTCTAGCGGTTTTTTATTACGTTTCTGTAGCA
CATTTCTATGTTGGAATTAGTGGTTTTATTCTTTACATTTTTAGCACAAT
TTGGAAAAGGAATATGCAAGTTTTATGAATCATTTGTCAATGTTTACTTC
TGACTGATGATCTGGTAGTTCTTAGAAAAAGATGTCCAAATTAGTTTATG
TTTTTATTGTAGATAAAAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00016295-exon-sc0000232-1575043694:96268..99175 | TCONS_00016295-exon-sc0000232-1575043694:96268..99175 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1575043694:93198..93703 | TCONS_00016295-exon-sc0000232-1575043694:93198..93703 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1575043694:92869..93059 | TCONS_00016295-exon-sc0000232-1575043694:92869..93059 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1575043694:90703..90831 | TCONS_00016295-exon-sc0000232-1575043694:90703..90831 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1510915933:96268..99175 | TCONS_00016295-exon-sc0000232-1510915933:96268..99175 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1510915933:93198..93703 | TCONS_00016295-exon-sc0000232-1510915933:93198..93703 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1510915933:92869..93059 | TCONS_00016295-exon-sc0000232-1510915933:92869..93059 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1510915933:90703..90831 | TCONS_00016295-exon-sc0000232-1510915933:90703..90831 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1491911889:96268..99175 | TCONS_00016295-exon-sc0000232-1491911889:96268..99175 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1491911889:93198..93703 | TCONS_00016295-exon-sc0000232-1491911889:93198..93703 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1491911889:92869..93059 | TCONS_00016295-exon-sc0000232-1491911889:92869..93059 | Clytia hemisphaerica | exon |
TCONS_00016295-exon-sc0000232-1491911889:90703..90831 | TCONS_00016295-exon-sc0000232-1491911889:90703..90831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000232 | supercontig | sc0000232:90703..99175 - |
Blast
The following BLAST results are available for this feature:
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