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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016264 ID=TCONS_00016264|Name=TCONS_00016264|organism=Clytia hemisphaerica|type=transcript|length=2480bp
GTGACCTTTTACTGGTTTTATTTTatagagaaatatgaaaaagtTGCTTC
AGTGGAATGACGAAGGGTGAGTGATGGGTCAAAAATGTACAGCACCTCAA
ATACTACAAGATGATGAAGTCTTCAAAAAcaactcaaaacaaaacaaaac
agGATTTTATCTGACCAATCGGAACCGTCGTAAAAGTTCCACATCTGACC
AAACCAAAGATGAGAAAAGGCGACGTCGTAAATCGTCCGCCAAAGAGACG
CAAGACGGGGTGACGTTAAACGGAAGCGTCAGGAAACGCACGGGAGAGAA
AAGTAACGGGAATACGGAAACGTTAACGGTATCACCATCCACAGATCAAG
ATGAATTCGTGTTACAAACATTTTGTAAAAGTCCTTTAACTCCACACAAA
AGGTTATCTATCCATCATGGACATGATGATTTTGCTTTCGATCGACCACA
AGATAAAGACGATGGAAAAATACGCCATGTTGATTTTGATGCTATTTCAA
TTGCAAAGGTCACGGAGGAACAATATGCAGAAAGTTTGGATGAAAATAGG
AATAGTGAGAAAATGAAAGATGTGACTATGGGCCAGGGACACGGTAAAGA
GGATCAACTTGCTGAAAATGAACCTAAAACTGTTGAAAATGAACTAAGAA
CTGCTGGAAATGAACTAAGAACTGCTAAAAATGAAGAAGCAAAGCTTTAT
AAAGATGTTGATGCTTCAGAGATCATCTTTGAAGAGGATTCTCAGTCGAA
AGATgaatcaaaaagtgaaaattcaGAGGTACTCGTGAAAGTCAATGAAT
TTGTTGaaagtaatgaaaataaaattgacgAGAAAGAGAGACAAATTGTT
GAAACTGGAATTGTTGAAAGCGTGACCGAAAATGTTAATAGAGAGCCACC
TGCAAAAAGATTAAGCAAATTTAAACTTTTCGTGTTTCAAGAATATGCAG
ATCGAATGAGTGATCGTATCTTATCGAACACTTCCACGACGTTAGATCAG
TTTCATGATTCACAAGTGGATTTCGCTGAAGACCTCTCGCTCACTGTTTT
ATATGAAGCCAGGAAAGAAGTTTATAACAACACGTCCACAAGCACACAGG
CTAATGATGAGGAAAATAACAATAACGAAAGTACGCTTGACATGATAGCG
GATAAACTTGTCGATCaaattttatttggaaaaacTTCTCCTCAAAACAA
ACTTGCTTCAACTGCTACTATAGAGAAACCACCAGAACCTTCTGAAAAGG
CTGCTATTCCCTCTGATTCAACAATATCTGTAGAAAATGATAATAAACTT
GATGTCGAGGACGGAGCGATCAAAACGGACTATGGCCGCCCACTTTCTGG
TTACGCCAAAAATTTAGCAGATTTCCTCGcagatgatgatgaatttgAAT
TAAGCGATGCAGAGGATGAAGATGCAAAAGAGGAAATTGCTAGACCAAGG
TCGGTTGGGGCAAGACCAAGCAGGGAGGGAGCTAGAGACAGTCAAGAGGA
GAGTGATTACGAAGACACAGAAGATGACGAAGACGAGCTTTCGGATGACG
AAGATGAAAGTTTTCTTGACGAGGAAaatgtttcttttgaaaatgacgAT
GAAAGGACTACAATTTTCGTGAATGCTGATTTTGTTGATGATGAGGtagc
aaagaaagaaaaattagaaacaaaagaatttgagaCTCAAAAACTACAAG
AACCTTTAGAAACGAGTGCTGTTGAAAAACAAGAACCTGAGATTAAGATA
GAAACGGAAAACAAAAAAGCCAAAACATCACAATATGCTCCTGCAGTGAA
GCGACGTCAAAATAATCGGCGCACGAGAGGAGAGCGTCCTAAGAGTTTAT
ATGAACAAGATCTACAGGAGATTTTCAACGAGATTAAGATGCCGGCAGAC
GAGGATGGCGGCAATGATGATCAAGATGACAGCAAAGAGGTTTTGGAGGA
TGGTATTAAGCCAGTGTCGGAAACGATGAACTTCTTGGAGAATCATATCG
AAGCGAAACGAAACATGATGAAGAgaaacgaagaagaagaagaagaatat
tTGATGATGGACGAAGATGAACACGTTTCAAACAATTCAAGTGATTTGCT
GGGTTgtcaaaaaacaaagaaagtctCACAACAAAAACCGCCAGTACTTG
GTCGCGCGGCCGTTATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTT
TCAGGGGATATCCGCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACC
ACGGAGGTTTTCTCAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTG
GTGATGAAGCATGGGAGATTGCTGGTATGTTGCAGATCGAACATCCAATC
AAACAAGAGATTAACAACTGGTCGGACATCGGCAAcatttttgaatatct
ttacgaTGAAGAACTGAAGATCAACAGTAACGAACATCCCATGCTTCTCA
CTGAACCTGGCCTTACTTCCTCAACTCATC Run BLAST on NCBI transcript from alignment at sc0000232:366959..372039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016264 ID=TCONS_00016264|Name=TCONS_00016264|organism=Clytia hemisphaerica|type=transcript|length=5081bp|location=Sequence derived from alignment at sc0000232:366959..372039+ (Clytia hemisphaerica)
GTGACCTTTTACTGGTTTTATTTTatagagaaatatgaaaaagtTGCTTC
AGTGGAATGACGAAGGGTGAGTGATGGGTCAAAAATGTACAGCACCTCAA
ATACTACAAGATGATGAAGTCTTCAAAAAcaactcaaaacaaaacaaaac
aggtTGGTGCATGTTCTCTCacattttgtgttttgttgaCATGGATAGAT
ACATTTCATTTAATCTGCTGAAACCCGCCCTTCTTTGTCTGTTTACGAAA
TCCGCCCCGTTTCGTCTGTCCTTGATACCTGCccgttttcttcttttgtt
tttgaaacccgcctttctttgtctttttggCATCATCAAGATTTGAGGTT
GTTATCGCTTTTCACGGTTCGTCGATAACATTCAGTTAAAAAGGTTTTAT
GATTATATTTGAGGTATTCATATAAATGTGTCAGACAAAAATAATACTAT
TAGAGCGTCTTTATCGCGTATTCCCTTCGCTCGTTTCGTAACAACTCGAC
AATTTGTAATGAAATTATACAAAACAAGagcttttgaatgctaaaagtTC
ATTCATTTTGTCCTGTAAGTGAATACTTCAacttatttctcattttgtcA
TATAAAGACAGTCGAGAAACTTGACCTCAAGGTTTTttagtaaaagaaaa
aatcttttgacgAAGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAA
AAATGACAActtcttgttttgaaaagttttatcaGAGATTTCGATCACTG
GTTTTGTCTGTTAAAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAG
AGCGCGGGAGAGTTGTCGACTTGTTATTTGATCAAACTTTAATGTCAACA
TTCGGAACAAAAAGGATACGTTTTATTAAAACAAATATCTCACTCCTCTT
ATGACActtcaaatttaataaaaccACCAAGTCAAAACACAGTTCGCAAA
TAAAACTTCTTATGTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAG
AGTGAAGCTGTTCATAGCGCAAACACACCATCATGAACTATACTCAATTT
CTGTACGGTGGGATTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCT
GACCAATCGGAACCGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATG
AGAAAAGGCGACGTCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTG
ACGTTAAACGGAAGCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAA
TACGGAAACGTTAACGGTATCACCATCCACAGATCAAGATGAATTCGTGT
TACAAACATTTTGTAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATC
CATCATGGACATGATGATTTTGCTTTCGATCGACCACAAGATAAAGACGA
TGGAAAAATACGCCATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCA
CGGAGGAACAATATGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAA
ATGAAAGATGTGACTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGC
TGAAAATGAACCTAAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATG
AACTAAGAACTGCTAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGAT
GCTTCAGAGATCATCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaa
aagtgaaaattcaGAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagta
atgaaaataaaattgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATT
GTTGAAAGCGTGACCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATT
AAGCAAATTTAAACTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTG
ATCGTATCTTATCGAACACTTCCACGACGTTAGATCAGTTTCATGATTCA
CAAGTGGATTTCGCTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAG
GAAAGAAGTTTATAACAACACGTCCACAAGCACACAGGCTAATGATGAGG
AAAATAACAATAACGAAAGTACGCTTGACATGATAGCGGATAAACTTGTC
GATCaaattttatttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAAC
TGCTACTATAGAGAAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCT
CTGATTCAACAATATCTGTAGAAAATGATAATAAACTTGATGTCGAGGAC
GGAGCGATCAAAACGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAA
TTTAGCAGATTTCCTCGcagatgatgatgaatttgAATTAAGCGATGCAG
AGGATGAAGATGCAAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCA
AGACCAAGCAGGGAGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGA
AGACACAGAAGATGACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTT
TTCTTGACGAGGAAaatgtttcttttgaaaatgacgATGAAAGGACTACA
ATTTTCGTGAATGCTGATTTTGTTGATGATGAGGtagcaaagaaagaaaa
attagaaacaaaagaatttgagaCTCAAAAACTACAAGAACCTTTAGAAA
CGAGTGCTGTTGAAAAACAAGAACCTGAGATTAAGATAGAAACGGAAAAC
AAAAAAGCCAAAACATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAA
TAATCGGCGCACGAGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATC
TACAGGAGATTTTCAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGC
AATGATGATCAAGATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCC
AGTGTCGGAAACGATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAA
ACATGATGAAGAgaaacgaagaagaagaagaagaatattTGATGATGGAC
GAAGATGAACACGTTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaa
aacaaagaaagtctCACAACAAAAACGTGAGTCTGCATTTTTGATATCCC
TCTTCTCTCTTTTTGTTCAATCACTGATAAAGTTATATCATGTGGCGTTT
ATACCTACAAATACCTAAACTAAACCCtgctttaaaataaaaatacagtg
GAAacgaaaaagggaaaattttgacagactttattcCGAAGAAAGCAGCC
TGTTGATTATCCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTAT
TTTCCCAGCAATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCG
AGATCTAAAAAACATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGC
GCGGCCGTTATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGG
GGATATCCGCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGA
GGTTTTCTCAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGAT
GAAGCATGGGAGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTC
ACACATACATTCCAAAATTAATTATTACTAGTCCAATTCAAATTGGGGAA
TTCCATTGAAAAATTCCACTCACCCAAAGGATAaagatttccgaaaaaat
tgttttaaagtttaaacagGTATACTCAATCACTATGATCGAGTTCAAGT
TTTCCTTGGAGCACGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACG
GTCTTACCTCCGCTCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAAC
AAGAGATTAACAACTGGTCGGACATCGGCAAcatttttgaatatctttac
gaTGAAGAACTGAAGATCAACAGTAACGAACATCCCATGCTTCTCACTGA
ACCTGGCCTTACTTCCTCAACTCATCGAGAAAAGTTGATTGAGGTCAGTT
CTTCCTTTACTCGGTGTTTCTCCTTTGAGGGCTGGTCATTTCTAGAATTG
ATACATGCCCATTAGATAACTGTGACTGAGGAAAAAGTGATAGGATAGGA
GCTTATGacatagtgtccttcagggtctctccccccccatgcctagaatg
aaaattttccattcccccctcATTTTTCCCCACCCTGCCTCCAAAAATTT
CTCTGTCCCCCCCCCTCAAGNTCAATCACTGATAAAGTTATATCATGTGG
CGTTTATACCTACAAATACCTAAACTAAACCCtgctttaaaataaaaata
cagtgGAAacgaaaaagggaaaattttgacagactttattcCGAAGAAAG
CAGCCTGTTGATTATCCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGG
CTTATTTTCCCAGCAATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTT
TATCGAGATCTAAAAAACATTGTTCTATTTTCTTTCAGCGCCAGTACTTG
GTCGCGCGGCCGTTATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTT
TCAGGGGATATCCGCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACC
ACGGAGGTTTTCTCAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTG
GTGATGAAGCATGGGAGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTT
TGTTCACACATACATTCCAAAATTAATTATTACTAGTCCAATTCAAATTG
GGGAATTCCATTGAAAAATTCCACTCACCCAAAGGATAaagatttccgaa
aaaattgttttaaagtttaaacagGTATACTCAATCACTATGATCGAGTT
CAAGTTTTCCTTGGAGCACGTTTCCTCTAATTTTCCATCTTTTCATTTAA
TGACGGTCTTACCTCCGCTCTTTTCTCCCTTTGTTCACAGAACATCCAAT
CAAACAAGAGATTAACAACTGGTCGGACATCGGCAAcatttttgaatatc
tttacgaTGAAGAACTGAAGATCAACAGTAACGAACATCCCATGCTTCTC
ACTGAACCTGGCCTTACTTCCTCAACTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016264-exon-sc0000232-1491911889:366959..367110 | TCONS_00016264-exon-sc0000232-1491911889:366959..367110 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1510915933:366959..367110 | TCONS_00016264-exon-sc0000232-1510915933:366959..367110 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1575043694:366959..367110 | TCONS_00016264-exon-sc0000232-1575043694:366959..367110 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1491911889:368049..370034 | TCONS_00016264-exon-sc0000232-1491911889:368049..370034 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1510915933:368049..370034 | TCONS_00016264-exon-sc0000232-1510915933:368049..370034 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1575043694:368049..370034 | TCONS_00016264-exon-sc0000232-1575043694:368049..370034 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1491911889:371447..371647 | TCONS_00016264-exon-sc0000232-1491911889:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1510915933:371447..371647 | TCONS_00016264-exon-sc0000232-1510915933:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1575043694:371447..371647 | TCONS_00016264-exon-sc0000232-1575043694:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1491911889:371899..372039 | TCONS_00016264-exon-sc0000232-1491911889:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1510915933:371899..372039 | TCONS_00016264-exon-sc0000232-1510915933:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016264-exon-sc0000232-1575043694:371899..372039 | TCONS_00016264-exon-sc0000232-1575043694:371899..372039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:366959..372039 + |
Blast
BLAST of TCONS_00016264 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.716e-16 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query: 2156 AAVIDFGCGALKAGLSGDIRPSCYCPSVIGVPRRFSQDVSKMKKGFYVGDEAWEIAGMLQIEHPIKQEI-NNWSDIGNIFEYLYDEELKINSNEHPMLLTEPGL 2464
A VID G G KAG +GD P PS++G PR V +K YVGDEA G+L +++PI+ I NW D+ I+ + + EL++ EHP+LLTE L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
The following BLAST results are available for this feature:
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