|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016254 ID=TCONS_00016254|Name=TCONS_00016254|organism=Clytia hemisphaerica|type=transcript|length=845bp
CTTTCTCCATTTTGGATGATCAAGATGAAACATCATAACAAATGGCTTGG
TCACACGCACATAGAGAAAATTTATCTATATCGCTTCTCGCAAAATTGAC
CGCGTATAGAATTCGAAAGTAAAATGGCTCAATCAGTTCCTCTGACGTTG
CACTGAAAATCTTCAACACTTGATCCCAGAACAGAGCCACGACACTACTA
CACGAGACgagaaacaaatcaaaatgACTCAATCTGCATCAGCCACTAAT
GTCGGAGCTGGAAAAGCCCCCAGCAAAGCATCCAGCCCAAAAGCTGGTAC
GGTCAGGAACCGCAAAGCTGCTTCATCAACGACAGTAACTCGACGTGCAG
GTGGAGGTGGTGGCCAACCAAACATGTGGAGATTTTATACTGAAGACTCA
CCTGGAATCAAAGTcggACCAGTTCCAGTGCTAGTAATGAGCTTATTATT
TATCGCATCTGTCTTCATGCTTCACATCTGGGGAAAATACACTCGATCAT
GATCCAATtaacaaaaatcgaaaattttacatttttagatAAAATCTCCT
CTAATattgtattatattttttgatatatcaaaagCTCCTGCTTGCCTCT
CGTCACATtaggtatttattttgaaattttgatatgtaAGTTTAAATGGT
GGATCTTCACTACCTCAATATGTTTGGgtgaaaagtgtttttaattttGT
AGAACTTAACATGCATCTTGTTTTTCGAGAAGAGTTAACTTGGGCATTCG
GATAGGTTGGGAAATTTTTTATCAACTTATAATATGTAATCTATAAATGA
AttatgaaataatgaaaataacaaGGAAAGAACTTCATATTCTAC Run BLAST on NCBI transcript from alignment at sc0000232:108908..115340+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016254 ID=TCONS_00016254|Name=TCONS_00016254|organism=Clytia hemisphaerica|type=transcript|length=6433bp|location=Sequence derived from alignment at sc0000232:108908..115340+ (Clytia hemisphaerica)
CTTTCTCCATTTTGGATGATCAAGATGAAACATCATAACAAATGGCTTGG
TCACACGCACATAGAGAAAATTTATCTATATCGCTTCTCGCAAAATTGAC
CGCGTATAGAATTCGAAAGTAAAATGGCTCAATCAGTTCCTCTGACGTTG
CACTGAAAATCTTCAACACTTGATCCCAGAACAGAGCCACGACACTACTA
CACGAGACgagaaacaaatcaaaatggtaaggatttttttctggattttc
ctTTGCATTTTAATTCTAAAGGCCTTTTAGTACTTCGTATTTTATTTGTG
CAATTGATATGAAAAGGAATAGAAGAAAATAAGCCAAACAGTTTTGTGtt
tcacaaaatatttttttttgtagcTTTTTTCACTAGATTAACTTTTCACA
GTAAAATTATTACCATcgtctctctctctctaaaattagctagacaattt
tagtggggaagaacggaatttagcaaaaagttttgTGGAATTTCagaatt
ggcaaaaaatattcaaaatttgcggaatttttgacaaaaatcttgaattt
caaatagggtggtcagaggaaatttcaaacttacttgcagaataccaaac
caagtttaatggaaagccataaccatcagaagaaaaatgagaggggtcat
ttaccttccaattctttaaagttccaaagatattacattttgaagttcaa
tttttcaagcattttcgtgcacgcatcgccagccattttgtaccttcatt
acggcaccaaaagcgaaagtgttttatgaaaaattccgcGCTGGAGGCTT
ggtgcgagttttattttccatagatgtagctgaaacgggggtaattacac
cataatctttcccttcttagcgcttgccaccggaaacaacttgattctta
cttttttcacatttgaaaagaaaaaacattgttctttctaaaaaattcac
gttcgttaaaaaaatttgattttttcaatgaaaaaaacgcattttaagta
cataatttgacttcctgaaaaatatacgttgctccaaccaacgaacgtgg
tacgtctcaaaagctaaactattgccgggaacgatgcaaaaaattccagg
tcgatagctgtttcgggtggctagcgctttggattttagagcccccggat
aaaaaattttgccgtgccgcgaacaagaagtttgaaaaaactcacccgcg
agtactcattttcaaattttgaaggaacatGAAGACATGATGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAATTCTCtacactttggaaaaaatactta
tgttaaaagaggtttccttccttgagatatgtaagcttgaatattttttt
tcgaaaatctatgttttgttactgccTCACGCGTAAGGCTCGACATCCct
atttcaaaggaattttcggtggctgaattttggttcaattttaGACAGTT
TGatggaaattggagaaaaaattagCGGAATTGCAGAatcaggtaccccc
tgaaacccccatGAAAAGTTCCACTGTAATTTctagaagaagaaaataaa
caaacaaaactaaCTTTGCCTAGTTGAAAAAGTGCAAAGTGTTAGGGAGT
GTGTAGACCAATCTCAACACAGAAACCCCTTTCAATCTTATGCCGAAAGT
GGAATCTTAACTCAGGGAAATTCTGGCTGGcagggtctttttttcttttg
tttattacCGTAACTTCATGTAATCCCGACATGCCTTGTTTAATTCTGCC
ATAGCATGCAACTGTCTggtcttttaaatgtttatagaTAAATCCTTCTG
AGAAAgctgttttaaaaaaatcaccctAACTACTTTGCAGACCAAATAGT
TGCTATGACAaaattagacaaggtatgtcggCATTACACAAAGTTACAGT
ACAAAACAAGAAAAGGCAAAatgtacaaattttttttagaacCAGAAACT
TTTCCATTCGAGTATTTATATTTATTAGGGTCATTCCCAAAAGTTTACAC
TTTTTTTgacaaagaaatattttggtaaCACGAGAAACTTTAGATTATTG
ATTTgcaataataatgataatatcagggctgcaaataagcgtcTGTCATT
GGTCAATGTCCAACTGAAAAGCCAATTGATcgactgaaaatattttgttt
cgtTCATGATGTCAGAATGAAAAGAGGAATAAACCATTAATTTGAGAGTT
GGAAATAAatctcttacacccctgtctcttactttgtagctttcaagagt
gtttctaaagtTTACTTTAATTGACTGCGGTCTCGGTAACTTCATTAACG
GTTGTTTCTATGATCACATTTATCAACTCGCGTAATTCGTAAATTTTAAG
GGAATTTCTAAAATCACTTTTGTCGacttgctttctttgtaactttcttG
TTTCTAAGACcccttttatcaattcgctttcttcactgaatgaccgacag
gatttcatttctgtcagacatgatgtccgattgactaaatatatttattt
gcagccctatAATATACATTCAAAAATAAATCGACTCAATGTAAACTTAT
TGATAATGTATTCCTATTTGAATAAGACATTCCTAGATTGACAAAAAAGA
TGACATACTTGTCTTTAATGGGATAACTTTTTGCAGGATTTTCGCAGATT
TGGATGTCATCTGCTAAATTATGTCctaatggaaatttgaaaaggcGATa
tctataaaatatttttgaacaagactcaaaaaaatgttaaagggacataa
cagtatatgcaaaatttgtaaacaaactgtatgcagcggatacaaaatca
aaacaaatgtcacatgtcaaaataaaaaatcaaaccaaatatggctaatt
ttgattgttcaattattttacaagtttgttttggacacgtaattttaatt
gttctctctaatgacacgtggttcgcgcaatgtttgtattttactacttt
aatgtccctttaaatggCTACTTTTAAAATGTTCCAAAAGTTACCATtgc
agaatttttttaccattgcacagtctgcttatatatacttactatgtttg
ctatatctTCTAGGcaaaaaaaacagtaaaaaaagaTAAGATAAGATTTT
TTATGAGTGCTGTTACAATTTTCTTTAATTGCGGCCacataaatttttaa
caaaaatgtaCAGTGCCTTTGCTGCTGCTTGGAACTGAGCAGGTAACGTA
gaaattaaaagtcaaaaaaagtaggATGAGAATATCACAACTACGTTGGC
AATTTTTAATTGAAGAATTTTAGTGTTTCATCTACTATCTATTTGTTGCT
ATCAAAATCGTTATAGTAAAAAGGCCATGTCTACGCATACGTTTAATAAA
ACACCTTTGAAAAATTGTCTTGCTTCTTGTTATGAATACAATAAATAGAC
TAACTCAGGCTTTTCCTTCTTTTGACATCTAAGAATCTTTTGATCTGCAA
GTTTTGCCATTGTTTTGGTCAATacatacacacttttttttataagaata
atataCTTTgactgagggtcaagtattcttaacgtattcttattatttca
gagaaaaattttcttcctaGACAGCTTATGTGAGTGATTCtaaactacct
taagggaactaattttggcgagcggtgaaaatctttaaaaaatttaattt
tggcgggaacttattttggcgaatagtgaatttttttaattttggtggga
actaattttggtgaatgacagcgtaaatctgttctattttgccttatttt
gagcaattttcatgaatttcaggggttatttaggcaaggaaacaaaaagt
ttaattttggcgggaacttattttgccgagtgagcaaaatatttaatttt
ggcgtgaACTAATTTGGAGAATTTTgcctaaattcgccaaattcgccaaa
atcagTTCctaccaaaataagttcccttaaggtatctcTTTTGTTAATTA
ATTtgtgtcacttttgttttcccattttttgaaaaatgacagttttattC
TTATTGACTGATTGAAATTCACCCTAggcctagagggtattcttagggta
ttcaaacgatttggccaattttcaccctgatatttttatagaagatattc
ttatttaaaaaagtgTGTAACACATAATCAAAGCAAAAGCAAAGCATAGA
CCCCTCAAAAACAATCATGAAGAAAGGTGCATTTTTTGAGCTCTTTGAAT
TTCACATCTTTCTTTCCTAATATGATTTTCTGGGACACCCTGTGATCAAG
TGTTTTTGacaaagaaaaacaatgtaAAAACAAAGTTACAATATTTTACA
TGATTAGACTTGGAATTTAGAACTTCCAAAGTCTTGAAAAGTAAAGGAAT
Agtgactaccttaaaggaagaaattttggcgggaatttaatttggcggat
gaccgaaaaagttttttagagggaatttaatttggcagatggacgaaaaa
actaaatttggcgggaatttaatttggcgtttactgaaaaatttatcctt
aaaatggcgtaaaaacagcaaaaaaatgcaaacacaccttaaaagagatc
atattttcaaaaagtttaatttggcgggaatttaatttggcagatggccg
aaaaaaaaactttggcgggaacttaatttggcggattctggccaaatcca
ccaaatccgccaaattttctttccgccaaaatttcttcttttaaggtaGT
TTGgatataaaaaaagataaaaacaattcttttaattattaaaactcatt
ttccttcaaaaaaagagaaaatctctAAATACGCAACCGGatgttttcct
ttaaaaatgcgGCTAAAATGGAGTAATCTTGGATGGAAATTAGGCCTCTA
AACAGGAGAAGTGGAAAAAATAGCTGGGGAAACAATTCAACTGAAAAACT
GCTTGAATTGGGTTCatgtaccgggtgcgccacaaaaaagtttctctctt
tgaaactgattttctcgaaatctaaaaattttaagagAACCACtcctatt
ttattggaaagaagaaagattaacttaaattttgatgggtcatttattaa
attcggttcattagatcaagagttatgctcaattgaataaaaaacttact
ttcagaaagtgcccgaaaacgttaaaaatcgacctatcaaattttatttt
aaaattggcaatcgcaatagacgttacatgattaaaagcatttttcagta
acacataaattttgaaacggATGGTTtcaaaagggtttaaaatcttcatc
aaaatcattttaatttactttcaaataagggagcctatcgaataatagaa
cgtcgaattagagagcgtccacTGTATTAGTAAATGAtgaataaagtttt
tttctgacaCCATTCCGAGTTGTAACGTAAACAGGAAAATGACTATTAAA
CATTTGTTTGTGTTTAGACTCAATCTGCATCAGCCACTAATGTCGGAGCT
GGAAAAGCCCCCAGCAAAGCATCCAGCCCAAAAGCTGGTACGGTCAGGAA
CCGCAAAGCTGCTTCATCAACGACAGTAACTCGACGTGCAGGTGGAGGTG
GTGGCCAACCAAACATGTGGAGATTTTATACTGAAGACTCACCTGGAATC
AAAGTGTAAGCTTTTTTAATGTATTCAAGGAAAGACTTAGTAAATGTCTT
AGTAAGAAAGCTTTGTGTGAATTATTATTGAGACGATACAATACAAAAAG
GCTTTATACCCAGTGCCAACGTTATTATTTCTGGTCAAGTACAACGTATA
AGTACACGTAAATAAAGGTTTGCCGTATAGGCAGAATAGCGGGACTTTGA
GTTACAGTATCACATGATTTTTCAATattgctttctttttttttcatttt
agcggACCAGTTCCAGTGCTAGTAATGAGCTTATTATTTATCGCATCTGT
CTTCATGCTTCACATCTGGGGAAAATACACTCGATCATGATCCAATtaac
aaaaatcgaaaattttacatttttagatAAAATCTCCTCTAATattgtat
tatattttttgatatatcaaaagCTCCTGCTTGCCTCTCGTCACATtagg
tatttattttgaaattttgatatgtaAGTTTAAATGGTGGATCTTCACTA
CCTCAATATGTTTGGgtgaaaagtgtttttaattttGTAGAACTTAACAT
GCATCTTGTTTTTCGAGAAGAGTTAACTTGGGCATTCGGATAGGTTGGGA
AATTTTTTATCAACTTATAATATGTAATCTATAAATGAAttatgaaataa
tgaaaataacaaGGAAAGAACTTCATATTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016254-exon-sc0000232-1491911889:108908..109133 | TCONS_00016254-exon-sc0000232-1491911889:108908..109133 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1510915933:108908..109133 | TCONS_00016254-exon-sc0000232-1510915933:108908..109133 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1575043694:108908..109133 | TCONS_00016254-exon-sc0000232-1575043694:108908..109133 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1491911889:114475..114662 | TCONS_00016254-exon-sc0000232-1491911889:114475..114662 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1510915933:114475..114662 | TCONS_00016254-exon-sc0000232-1510915933:114475..114662 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1575043694:114475..114662 | TCONS_00016254-exon-sc0000232-1575043694:114475..114662 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1491911889:114910..115340 | TCONS_00016254-exon-sc0000232-1491911889:114910..115340 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1510915933:114910..115340 | TCONS_00016254-exon-sc0000232-1510915933:114910..115340 | Clytia hemisphaerica | exon |
| TCONS_00016254-exon-sc0000232-1575043694:114910..115340 | TCONS_00016254-exon-sc0000232-1575043694:114910..115340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:108908..115340 + |
Blast
BLAST of TCONS_00016254 vs. Swiss-Prot (Human)
Match: SC61B (Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.217e-30 Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 2
Query: 239 SATNVGA-GKAPSKASSPKAG--TVRNRKAASSTTVTRRAXXXXXQPNMWRFYTEDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 499
S TNVG+ G++PSKA + +A TVR RK AS T + G MWRFYTEDSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 7 SGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
The following BLAST results are available for this feature:
|
