TCONS_00016253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016253
Unique NameTCONS_00016253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016253 ID=TCONS_00016253|Name=TCONS_00016253|organism=Clytia hemisphaerica|type=transcript|length=2843bp
GTAGTTTATGTGTAATGTTGCTAACAAATAGAGAGGCGTATGTTAATCAG
CAGAAAATATATGAAATCATCATAgcgatgtttttgaaaatttgagaaaa
gcTTGTACTGCAGTAGTCGATAAAACATGAGGTTGAGCAACCATTTTATG
GTTTTGTGCTTTATGTTGAGCACCGCTCACAGTGACTATGCGCCATATTG
GATTTACGGTTTGTTTTCAATGTCGTCATGTGACAGTCGTTTTCCGTTCA
GCTGTTCGAATGCGATCGCAAATCAACAACTGATGGACCTTACTATAGAG
AAAAACAATGGAATACTGAAAACCAAAATGGATTTTTGTGCTCAAGACGT
CGGACACAGTCAACGAAAGATGTTAAATTCACTTTTACCAGGACTTTTCA
AAGGTAGTTTTAACTTAACTGGAAATTGTATAAATCCAACAATGACTGGA
GTTCACCAGAACAAAGCACTGTTTGTTTACACTCATGTGACCTTTGAGCT
TACGCAACTTGTTAGTTCAATCTTATTACCATTTGACATCCCACTTCTGG
CGATCACCTATCAGCAAATCTATCCAGCCTCATTCCTAGCCAATCCTCTC
TACGTCTATAGTTACGAGGCTAGTTTCGGACAGGAAATTCATAAAACGGG
GATCAACAATTTCAGAAAACAACTGAACATTACTATAGCCGCTGTATTGA
ACCTAATTGAGCCAGATGAGTCAGCCAAAATCCAATCCAATAGAACGACA
TGCGACCCTGAAGACCAAGGAGCATTCTGTACGTACGTTGGATTGGAAAT
ATCAGACTCTTGTATGAAAGAGAGATCTGTAGCCGTCAGCGATGATCATG
ACTTGAATCGAACTTTGGAAATCATTCTTCACACTGAACGATTATCGTTC
ATCCTCATACAAGGACCAAGCCATCTACAAACagaatttcaagtcaaaat
gcAAAGCTGGAAAAGACAGGATAAACGTTTACAAAatctattttttatca
attttgaaatcattgatGAGAACCCATCCAGTGAAGTGACGAGTCTAGCC
AAAGGGAGGTATGGCGATGGTTTCAAATCCTTTGATAATATTTACAATCT
ACCAGGAGCCTTGGGATTGAATACGTTGGTTCACTATCTGCACCatttaa
aagctcattttctaACCAGAAAATTCTTTGAAAGCGTTGACAAATTTTAC
GATATAAACTTGATAGCGAAGGCACTGATAAATATTGATCCAGGGAAATA
CAAAATACTGAAATGGCTTAAACTCAAGCCAAAGTATTGGGACAGAATCC
CCACAAAAGCGAAAAATCAAGTCTTCGAAGCGTTAAAACATAGCAAGCAA
ATTATCACAgcttatttgaaattttggagagCTGTTTTCTATGTTAACTT
AATCGAGATTGAGAAAGTGTATCGGACTTATCTCTTTGACCCACGAAATG
CTTTGAAAGCGCAACCGGTCTGTAGATTAACTATACCGCAATGCGGGAAA
GGAACTTATCTAAGCCACTCCTATTACGCAGAAGTAAACTGGACTCGAAG
TTTCGGTTACCATTGCCTCTATTGTCCAAACGGTTTCTTTAAACCCGAAT
CAGGGAATACGGAATGTATCCAGTGTCCAAAATACCATTTGAGTTCGCCA
GACAGGAAATCTTGCTACGACCCTTATACGACAGTCTACTTATCATTCGG
GAAATCAGACTCATTGCTGGTATACGCTATCATCTCATCATTTCATGGAC
TCTTCATACTCTTAACATTCGTTACTTTCCACAGAAATCAATTCACACCT
CTGGTGAGAGCGTCACAAAAGAGTATTTCCTATTTCCAAATCGCTACTCA
TATTTTACTGACCTTTATACCGTTATGGTTGTTCGAAGGAGCGCCAAATA
CAGCAAAATGCATTGCGAGACCTATATCGATTGGCATACTTTTCTCTATA
ACAACGTCTATCAACCTTGGTAAAACACAGAAAGTGTTACGTATCTTCGG
CACCCAATTGCGCATGTCACGTAAGGATATTATAGTAACAAGAGCAACAG
AGATTTTTGTTGTGATATTTGTAGTGCTTCTAGACGGAGGCGTTCTGGTG
GTGACTATGGCGGGGAGAGGTGATATCGGGATGCAGGTTACACATTACAA
GGACACTCTACAAAAGGAATATCACTGCAGCAATAATACGGCAGTACTGA
TTCAATACGCTTTTATACTGATCGTTATAATTACAAACNCACTCTACAAA
AGGAATATCACTGCAGCAATAATACGGCAGTACTGATTCAATACGCTTTT
ATATTGATCGTTATAATTACAAACGCTATACAAGGGATACGTGCACGTAA
GCTACCGTCGTATTACCGTGAAACCGTTTACGTCATCTACGCTTCTTTTA
CGTCGAGTGTCGTTATTATAGCCTCGTTGGCTTTATATCTTTCACAGTCT
AGTGAAAATGCACGGACGGTAGTTTTGTTGATCACGTGTTTGATTCTGAA
TATTGAACACTTTGCATTGGTTTACGTATACAAACTTTACGTGTTACTTT
TACGCCGTGATATCAACCGTTCTTCCGTTTTCCGTAGGGAAAGGCAGAAG
AAGATTAATGACattttggtacaacactgattATTGAAGATCgttttaat
ttgattcttaggataaattgaaaaaataattatattaaaaTTCACCAATT
TCGCGTCTTTCTATTCCACTCATCAAAGCTATTTGAAATACAAGcttttt
gtttctattttcaCACACAAGAGAGGTGGggaatgaaaaaaacttttttc
ataaaaggCTTGAATAACATATTACGTGAATTTTAAGAAAGCT
Run BLAST on NCBI

transcript from alignment at sc0000232:74623..77521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016253 ID=TCONS_00016253|Name=TCONS_00016253|organism=Clytia hemisphaerica|type=transcript|length=2899bp|location=Sequence derived from alignment at sc0000232:74623..77521+ (Clytia hemisphaerica)
GTAGTTTATGTGTAATGTTGCTAACAAATAGAGAGGCGTATGTTAATCAG
CAGAAAATATATGAAATCATCATAgcgatgtttttgaaaatttgagaaaa
gcTTGTACTGCAGTAGTCGATAAAACATGAGGTTGAGCAACCATTTTATG
GTTTTGTGCTTTATGTTGAGCACCGCTCACAGTGACTATGCGCCATATTG
GATTTACGGTTTGTTTTCAATGTCGTCATGTGACAGTCGTTTTCCGTTCA
GCTGTTCGAATGCGATCGCAAATCAACAACTGATGGACCTTACTATAGAG
AAAAACAATGGAATACTGAAAACCAAAATGGATTTTTGTGCTCAAGACGT
CGGACACAGTCAACGAAAGATGTTAAATTCACTTTTACCAGGACTTTTCA
AAGGTAGTTTTAACTTAACTGGAAATTGTATAAATCCAACAATGACTGGA
GTTCACCAGAACAAAGCACTGTTTGTTTACACTCATGTGACCTTTGAGCT
TACGCAACTTGTTAGTTCAATCTTATTACCATTTGACATCCCACTTCTGG
CGATCACCTATCAGCAAATCTATCCAGCCTCATTCCTAGCCAATCCTCTC
TACGTCTATAGTTACGAGGCTAGTTTCGGACAGGAAATTCATAAAACGGG
GATCAACAATTTCAGAAAACAACTGAACATTACTATAGCCGCTGTATTGA
ACCTAATTGAGCCAGATGAGTCAGCCAAAATCCAATCCAATAGAACGACA
TGCGACCCTGAAGACCAAGGAGCATTCTGTACGTACGTTGGATTGGAAAT
ATCAGACTCTTGTATGAAAGAGAGATCTGTAGCCGTCAGCGATGATCATG
ACTTGAATCGAACTTTGGAAATCATTCTTCACACTGAACGATTATCGTTC
ATCCTCATACAAGGACCAAGCCATCTACAAACagaatttcaagtcaaaat
gcAAAGCTGGAAAAGACAGGATAAACGTTTACAAAatctattttttatca
attttgaaatcattgatGAGAACCCATCCAGTGAAGTGACGAGTCTAGCC
AAAGGGAGGTATGGCGATGGTTTCAAATCCTTTGATAATATTTACAATCT
ACCAGGAGCCTTGGGATTGAATACGTTGGTTCACTATCTGCACCatttaa
aagctcattttctaACCAGAAAATTCTTTGAAAGCGTTGACAAATTTTAC
GATATAAACTTGATAGCGAAGGCACTGATAAATATTGATCCAGGGAAATA
CAAAATACTGAAATGGCTTAAACTCAAGCCAAAGTATTGGGACAGAATCC
CCACAAAAGCGAAAAATCAAGTCTTCGAAGCGTTAAAACATAGCAAGCAA
ATTATCACAgcttatttgaaattttggagagCTGTTTTCTATGTTAACTT
AATCGAGATTGAGAAAGTGTATCGGACTTATCTCTTTGACCCACGAAATG
CTTTGAAAGCGCAACCGGTCTGTAGATTAACTATACCGCAATGCGGGAAA
GGAACTTATCTAAGCCACTCCTATTACGCAGAAGTAAACTGGACTCGAAG
TTTCGGTTACCATTGCCTCTATTGTCCAAACGGTTTCTTTAAACCCGAAT
CAGGGAATACGGAATGTATCCAGTGTCCAAAATACCATTTGAGTTCGCCA
GACAGGAAATCTTGCTACGACCCTTATACGACAGTCTACTTATCATTCGG
GAAATCAGACTCATTGCTGGTATACGCTATCATCTCATCATTTCATGGAC
TCTTCATACTCTTAACATTCATGNGGTATACGCTATCATCTCATCGTTTC
ATGGACTCTTCATACTCTTAACATTCGTTACTTTCCACAGAAATCAATTC
ACACCTCTGGTGAGAGCGTCACAAAAGAGTATTTCCTATTTCCAAATCGC
TACTCATATTTTACTGACCTTTATACCGTTATGGTTGTTCGAAGGAGCGC
CAAATACAGCAAAATGCATTGCGAGACCTATATCGATTGGCATACTTTTC
TCTATAACAACGTCTATCAACCTTGGTAAAACACAGAAAGTGTTACGTAT
CTTCGGCACCCAATTGCGCATGTCACGTAAGGATATTATAGTAACAAGAG
CAACAGAGATTTTTGTTGTGATATTTGTAGTGCTTCTAGACGGAGGCGTT
CTGGTGGTGACTATGGCGGGGAGAGGTGATATCGGGATGCAGGTTACACA
TTACAAGGACACTCTACAAAAGGAATATCACTGCAGCAATAATACGGCAG
TACTGATTCAATACGCTTTTATACTGATCGTTATAATTACAAACNCACTC
TACAAAAGGAATATCACTGCAGCAATAATACGGCAGTACTGATTCAATAC
GCTTTTATATTGATCGTTATAATTACAAACGCTATACAAGGGATACGTGC
ACGTAAGCTACCGTCGTATTACCGTGAAACCGTTTACGTCATCTACGCTT
CTTTTACGTCGAGTGTCGTTATTATAGCCTCGTTGGCTTTATATCTTTCA
CAGTCTAGTGAAAATGCACGGACGGTAGTTTTGTTGATCACGTGTTTGAT
TCTGAATATTGAACACTTTGCATTGGTTTACGTATACAAACTTTACGTGT
TACTTTTACGCCGTGATATCAACCGTTCTTCCGTTTTCCGTAGGGAAAGG
CAGAAGAAGATTAATGACattttggtacaacactgattATTGAAGATCgt
tttaatttgattcttaggataaattgaaaaaataattatattaaaaTTCA
CCAATTTCGCGTCTTTCTATTCCACTCATCAAAGCTATTTGAAATACAAG
ctttttgtttctattttcaCACACAAGAGAGGTGGggaatgaaaaaaact
tttttcataaaaggCTTGAATAACATATTACGTGAATTTTAAGAAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009082XLOC_009082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016253-exon-sc0000232-1491911889:74623..76388TCONS_00016253-exon-sc0000232-1491911889:74623..76388Clytia hemisphaericaexon
TCONS_00016253-exon-sc0000232-1510915933:74623..76388TCONS_00016253-exon-sc0000232-1510915933:74623..76388Clytia hemisphaericaexon
TCONS_00016253-exon-sc0000232-1575043694:74623..76388TCONS_00016253-exon-sc0000232-1575043694:74623..76388Clytia hemisphaericaexon
TCONS_00016253-exon-sc0000232-1491911889:76445..77521TCONS_00016253-exon-sc0000232-1491911889:76445..77521Clytia hemisphaericaexon
TCONS_00016253-exon-sc0000232-1510915933:76445..77521TCONS_00016253-exon-sc0000232-1510915933:76445..77521Clytia hemisphaericaexon
TCONS_00016253-exon-sc0000232-1575043694:76445..77521TCONS_00016253-exon-sc0000232-1575043694:76445..77521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:74623..77521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0134691	0.0394036	0.0152505	0.0447605	6.46967	5.41867	15.9275	15.7947	5.51581	8.62852	6.75924	6.20829	5.57811	6.15411	5.33082	4.27063	3.22399	6.0114	3.65702	7.93782	1.53668	1.65788	0.648625	0.617775	0.02971	0	12.5417	6.90307	0.0448491	0.106619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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