TCONS_00016249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016249
Unique NameTCONS_00016249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016249 ID=TCONS_00016249|Name=TCONS_00016249|organism=Clytia hemisphaerica|type=transcript|length=287bp
CAGCGTTGCTTTTGGTCCAAAAGATTTCTGACAACATATCGTGGGGCTCA
AGTTGATGTCCCTCGCAAAGATAGATTTGCAAATGGTGAGGGATTTTATA
CTCTTTGTCCGCAAAGTTTTCTATGGAGGATAAAGTATTGTGTTCACGAA
TATCCAAAGTTATCGTTTTTGTAAgcgatttcaaaacaaacattttcaac
ccaagaatcttgaaaaaatatttttcaagaggATTTATAAGTTCATATTT
TCCTGGTACAGGCTGAGGCGTCACTATTTGAAGACAG
Run BLAST on NCBI

transcript from alignment at sc0000231:305281..305567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016249 ID=TCONS_00016249|Name=TCONS_00016249|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000231:305281..305567 (Clytia hemisphaerica)
CTGTCTTCAAATAGTGACGCCTCAGCCTGTACCAGGAAAATATGAACTTA
TAAATcctcttgaaaaatattttttcaagattcttgggttgaaaatgttt
gttttgaaatcgcTTACAAAAACGATAACTTTGGATATTCGTGAACACAA
TACTTTATCCTCCATAGAAAACTTTGCGGACAAAGAGTATAAAATCCCTC
ACCATTTGCAAATCTATCTTTGCGAGGGACATCAACTTGAGCCCCACGAT
ATGTTGTCAGAAATCTTTTGGACCAAAAGCAACGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009079XLOC_009079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016249-exon-sc0000231-1491911889:305281..305567TCONS_00016249-exon-sc0000231-1491911889:305281..305567Clytia hemisphaericaexon
TCONS_00016249-exon-sc0000231-1510915933:305281..305567TCONS_00016249-exon-sc0000231-1510915933:305281..305567Clytia hemisphaericaexon
TCONS_00016249-exon-sc0000231-1575043694:305281..305567TCONS_00016249-exon-sc0000231-1575043694:305281..305567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:305281..305567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27263	3.44494	7.63374	2.15026	3.84858	3.35925	3.60911	6.24158	4.60407	2.64336	2.34767	1.99451	4.23668	5.52426	5.72309	8.44382	2.92731	4.1372	3.1608	5.58238	13.6073	10.9425	10.5528	8.93108	0	0	4.13965	5.54365	12.2568	14.2698
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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