TCONS_00016241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016241
Unique NameTCONS_00016241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016241 ID=TCONS_00016241|Name=TCONS_00016241|organism=Clytia hemisphaerica|type=transcript|length=585bp
gtttattgccGAGTTTACTTATTTGATATTCTAATGGTAGATTGGCGGCC
GACCAGGCTAAAGCTCAAAGGAGGGAGCCATTTTCCCATCGGAGATGATT
GATAGTCGCTCTTTGATGTGCCGTACCCCCAGTCGCATTCAACTGCCCTT
GCGCGTAAACTTAAGAATATTTCGGTTAGACcagccaatccccgaaaacg
agggctttcTTACTTAGTCTCCGGCTGGAAAACCCTTGACAGGGTCttgc
gaaattccgtaatctaaacctttcagttgttgaaaattttccaggtcttt
agagctttagcgagTCGGATGAGATTTTGTACATCTAGTACCAGATAACC
AGTTTACCTTTTCAATAACTGTTGATAGACGTGTATATTCCTTTTtaaaa
ttagttcttacaaTGTAAACCAAGTATGGCAGAaaataagcatctacttt
atgaGACTGGAATAAATAACTCTGGATAGACGGTGGTATACTTTTCAATA
AGTTCTTACAGTGAAATAGACCGATTCCgtgtgatttttctaagaaatgg
cAGAAACAATAGGTACAGGATGATTTAGTAACACC
Run BLAST on NCBI

transcript from alignment at sc0000231:134263..134847

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016241 ID=TCONS_00016241|Name=TCONS_00016241|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000231:134263..134847 (Clytia hemisphaerica)
GGTGTTACTAAATCATCCTGTACCTATTGTTTCTgccatttcttagaaaa
atcacacGGAATCGGTCTATTTCACTGTAAGAACTTATTGAAAAGTATAC
CACCGTCTATCCAGAGTTATTTATTCCAGTCtcataaagtagatgcttat
ttTCTGCCATACTTGGTTTACAttgtaagaactaattttaAAAAGGAATA
TACACGTCTATCAACAGTTATTGAAAAGGTAAACTGGTTATCTGGTACTA
GATGTACAAAATCTCATCCGActcgctaaagctctaaagacctggaaaat
tttcaacaactgaaaggtttagattacggaatttcgcaaGACCCTGTCAA
GGGTTTTCCAGCCGGAGACTAAGTAAgaaagccctcgttttcggggattg
gctgGTCTAACCGAAATATTCTTAAGTTTACGCGCAAGGGCAGTTGAATG
CGACTGGGGGTACGGCACATCAAAGAGCGACTATCAATCATCTCCGATGG
GAAAATGGCTCCCTCCTTTGAGCTTTAGCCTGGTCGGCCGCCAATCTACC
ATTAGAATATCAAATAAGTAAACTCggcaataaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009071XLOC_009071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016241-exon-sc0000231-1491911889:134263..134847TCONS_00016241-exon-sc0000231-1491911889:134263..134847Clytia hemisphaericaexon
TCONS_00016241-exon-sc0000231-1510915933:134263..134847TCONS_00016241-exon-sc0000231-1510915933:134263..134847Clytia hemisphaericaexon
TCONS_00016241-exon-sc0000231-1575043694:134263..134847TCONS_00016241-exon-sc0000231-1575043694:134263..134847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:134263..134847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0943557	0.184023	0.106834	0.313562	0.381732	0	0.242618	0.227136	0	0.295464	0	0.0628404	1.0668	1.88992	0.214313	0	0.0708325	0.072601	3.61088	0.314877	0	0	0	0.0983571	0	0.0904128	0	0	0.104727	0.213401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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