TCONS_00016236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016236
Unique NameTCONS_00016236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016236 ID=TCONS_00016236|Name=TCONS_00016236|organism=Clytia hemisphaerica|type=transcript|length=1635bp
ACGCACtgcaagatttttttaaatacttgaAAGgTATCATGTCACTCTCA
CCTGAAATGAAATACTGGCTCTCCTCACATTACATTTTAAACACAATAGC
TTGTACCATTTATATGCTGACAAAAACTGTTCATCCTGTGTGTATTTCTT
TGTTTGAACTTGATGAAAATGGAAATTGCCAGTTAGATTATCGGGATACT
GAGGTGCTCTTTTTCCTGGCTATGGTCATTGTCTTGAAGAATCGCAAATG
GAAACCTTTGACTGCTGTAGAATACGTATCTAACATTTATCTATTTGCTA
AGCTGGCCAATTTGTTATTATTCTTTCGACAAGATTTGAGATGGGGTGCT
TTATATGCTATTGTATGTCTTCtacttttcattgcatttccTGAGCCAAG
TTATACTGGTCCAGAGAAGATCACATATTTTAGAGGTCAAGCTCTAGATG
AGCAGATACTGCATCACCCAGAGGAAACTTGGATTATAGAATTTTTTGCG
CCCTGGTCACCACCCTGCAATCGATTTGCGTCAACCTTTGCTAATCTATC
ATTGAAATATGATCATCCTTTATTGAAATTTGGTAAACTGGATATAAACA
AGTATGAAAAAGTTGGTCAAAAACATCGTGTTGATGTATCAGTCTCATCC
AAGAATCTTCCCACTatcattgtttttgaaaatgggaAAGAAATTTCACG
GCAACCAACTGTCAATCCTGATGGTTCCATTAAAGCGTATCAATTCAAGG
AGGAAAATCTTATCCGTGATCTGGATTTGAATGATTTGTATGCTCGTGCT
AAACAAAGAGCTACTGatagaaataaaaagaagaattagaAGTTTTATGG
ATAACATTTAAACTTTAATGTGCGTGGAGACAACTACTGTAAACTTAAAA
GTAGTTTAAGTATTTGACTAGTCAAATACTTCTCAgaattgaaaataaga
acactttagATCATTTTTAGGTGTAAAACTAATAAGTTTCTCATGAAAAA
CCTTGTTTTGTACCTTTTGGTTTGTTTAAGATCCTTTCAATTTAAGTAAT
TTGGAAACTAGATTCTCGAGAGCTGATATCTGGAGAGATTTTGGAGAGAc
agtaatagaccttttcattaattacgtcacgaacatcacttgcctcgttt
tgaaattattgccatggtgattaacttccaggagattttattaaaactac
tttctattcataaaaaaattcaattttttctcaagggacataatgaccat
ggtaattgtttgaatacgaggtaaGCAATGTTTGTGACAATTTGTGAAAA
GCGCCTATTCACTCTCTGTTCTATAAAGTATTATTTCAATGTTATTTACC
CTAGGTTAtcaaaaaatgtcatttaaaaaatacccttaggataatttttt
atgtattttctaAGAAAAGCATTGTATATTTCTCATATTTAGGTGAATAT
ATATTATACCAGTTGTTTTTATTATCATGTGTGTTAGGTATGTTTTAGTG
GAATAACCTactttattatattatataggATATTTTGTTAGTTatgtaaa
agttttttattttggatATATTTAGAGCTTTTATTACAGAAAAAGAaatg
atacatttttatcaagcATCTTTTCCTTTCTGTGC
Run BLAST on NCBI

protein sequence of TCONS_00016236-protein

>TCONS_00016236-protein ID=TCONS_00016236-protein|Name=TCONS_00016236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
ALQDFFKYLKGIMSLSPEMKYWLSSHYILNTIACTIYMLTKTVHPVCISL
FELDENGNCQLDYRDTEVLFFLAMVIVLKNRKWKPLTAVEYVSNIYLFAK
LANLLLFFRQDLRWGALYAIVCLLLFIAFPEPSYTGPEKITYFRGQALDE
QILHHPEETWIIEFFAPWSPPCNRFASTFANLSLKYDHPLLKFGKLDINK
YEKVGQKHRVDVSVSSKNLPTIIVFENGKEISRQPTVNPDGSIKAYQFKE
ENLIRDLDLNDLYARAKQRATDRNKKKN
Run BLAST on NCBI

transcript from alignment at sc0000231:400540..402354-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016236 ID=TCONS_00016236|Name=TCONS_00016236|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000231:400540..402354- (Clytia hemisphaerica)
ACGCACTGCAAGATTTTTTTAAATACTTGAAAGGTGGTACAGGCTAGTAA
TGCCTTTTTTAACGTACAGACTATGTTACTTCTAACCTTTAATTTATTTA
TTGTTTTGAATAAGATTGATCACAGACAAATGAAAAGATAACTTTTTGTG
TTTTAACTGGTTTTGAATAAGTTGAAAATTGAATTGAAACTACTGAGATT
CATTTTATTTTAGGTATCATGTCACTCTCACCTGAAATGAAATACTGGCT
CTCCTCACATTACATTTTAAACACAATAGCTTGTACCATTTATATGCTGA
CAAAAACTGTTCATCCTGTGTGTATTTCTTTGTTTGAACTTGATGAAAAT
GGAAATTGCCAGTTAGATTATCGGGATACTGAGGTGCTCTTTTTCCTGGC
TATGGTCATTGTCTTGAAGAATCGCAAATGGAAACCTTTGACTGCTGTAG
AATACGTATCTAACATTTATCTATTTGCTAAGCTGGCCAATTTGTTATTA
TTCTTTCGACAAGATTTGAGATGGGGTGCTTTATATGCTATTGTATGTCT
TCTACTTTTCATTGCATTTCCTGAGCCAAGTTATACTGGTCCAGAGAAGA
TCACATATTTTAGAGGTCAAGCTCTAGATGAGCAGATACTGCATCACCCA
GAGGAAACTTGGATTATAGAATTTTTTGCGCCCTGGTCACCACCCTGCAA
TCGATTTGCGTCAACCTTTGCTAATCTATCATTGAAATATGATCATCCTT
TATTGAAATTTGGTAAACTGGATATAAACAAGTATGAAAAAGTTGGTCAA
AAACATCGTGTTGATGTATCAGTCTCATCCAAGAATCTTCCCACTATCAT
TGTTTTTGAAAATGGGAAAGAAATTTCACGGCAACCAACTGTCAATCCTG
ATGGTTCCATTAAAGCGTATCAATTCAAGGAGGAAAATCTTATCCGTGAT
CTGGATTTGAATGATTTGTATGCTCGTGCTAAACAAAGAGCTACTGATAG
AAATAAAAAGAAGAATTAGAAGTTTTATGGATAACATTTAAACTTTAATG
TGCGTGGAGACAACTACTGTAAACTTAAAAGTAGTTTAAGTATTTGACTA
GTCAAATACTTCTCAGAATTGAAAATAAGAACACTTTAGATCATTTTTAG
GTGTAAAACTAATAAGTTTCTCATGAAAAACCTTGTTTTGTACCTTTTGG
TTTGTTTAAGATCCTTTCAATTTAAGTAATTTGGAAACTAGATTCTCGAG
AGCTGATATCTGGAGAGATTTTGGAGAGACAGTAATAGACCTTTTCATTA
ATTACGTCACGAACATCACTTGCCTCGTTTTGAAATTATTGCCATGGTGA
TTAACTTCCAGGAGATTTTATTAAAACTACTTTCTATTCATAAAAAAATT
CAATTTTTTCTCAAGGGACATAATGACCATGGTAATTGTTTGAATACGAG
GTAAGCAATGTTTGTGACAATTTGTGAAAAGCGCCTATTCACTCTCTGTT
CTATAAAGTATTATTTCAATGTTATTTACCCTAGGTTATCAAAAAATGTC
ATTTAAAAAATACCCTTAGGATAATTTTTTATGTATTTTCTAAGAAAAGC
ATTGTATATTTCTCATATTTAGGTGAATATATATTATACCAGTTGTTTTT
ATTATCATGTGTGTTAGGTATGTTTTAGTGGAATAACCTACTTTATTATA
TTATATAGGATATTTTGTTAGTTATGTAAAAGTTTTTTATTTTGGATATA
TTTAGAGCTTTTATTACAGAAAAAGAAATGATACATTTTTATCAAGCATC
TTTTCCTTTCTGTGC

Coding sequence (CDS) from alignment at sc0000231:400540..402354-

>TCONS_00016236 ID=TCONS_00016236|Name=TCONS_00016236|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000231:400540..402354- (Clytia hemisphaerica)
GTATCATGTCACTCTCACCTGAAATGAAATACTGGCTCTCCTCACATTAC
ATTTTAAACACAATAGCTTGTACCATTTATATGCTGACAAAAACTGTTCA
TCCTGTGTGTATTTCTTTGTTTGAACTTGATGAAAATGGAAATTGCCAGT
TAGATTATCGGGATACTGAGGTGCTCTTTTTCCTGGCTATGGTCATTGTC
TTGAAGAATCGCAAATGGAAACCTTTGACTGCTGTAGAATACGTATCTAA
CATTTATCTATTTGCTAAGCTGGCCAATTTGTTATTATTCTTTCGACAAG
ATTTGAGATGGGGTGCTTTATATGCTATTGTATGTCTTCTACTTTTCATT
GCATTTCCTGAGCCAAGTTATACTGGTCCAGAGAAGATCACATATTTTAG
AGGTCAAGCTCTAGATGAGCAGATACTGCATCACCCAGAGGAAACTTGGA
TTATAGAATTTTTTGCGCCCTGGTCACCACCCTGCAATCGATTTGCGTCA
ACCTTTGCTAATCTATCATTGAAATATGATCATCCTTTATTGAAATTTGG
TAAACTGGATATAAACAAGTATGAAAAAGTTGGTCAAAAACATCGTGTTG
ATGTATCAGTCTCATCCAAGAATCTTCCCACTATCATTGTTTTTGAAAAT
GGGAAAGAAATTTCACGGCAACCAACTGTCAATCCTGATGGTTCCATTAA
AGCGTATCAATTCAAGGAGGAAAATCTTATCCGTGATCTGGATTTGAATG
ATTTGTATGCTCGTGCTAAACAAAGAGCTACTGATAGAAATAAAAAGAAG
AATTAGGCACTGCAAGATTTTTTTAAATACTTGAAAGGTATCATGTCACT
CTCACCTGAAATGAAATACTGGCTCTCCTCACATTACATTTTAAACACAA
TAGCTTGTACCATTTATATGCTGACAAAAACTGTTCATCCTGTGTGTATT
TCTTTGTTTGAACTTGATGAAAATGGAAATTGCCAGTTAGATTATCGGGA
TACTGAGGTGCTCTTTTTCCTGGCTATGGTCATTGTCTTGAAGAATCGCA
AATGGAAACCTTTGACTGCTGTAGAATACGTATCTAACATTTATCTATTT
GCTAAGCTGGCCAATTTGTTATTATTCTTTCGACAAGATTTGAGATGGGG
TGCTTTATATGCTATTGTATGTCTTCTACTTTTCATTGCATTTCCTGAGC
CAAGTTATACTGGTCCAGAGAAGATCACATATTTTAGAGGTCAAGCTCTA
GATGAGCAGATACTGCATCACCCAGAGGAAACTTGGATTATAGAATTTTT
TGCGCCCTGGTCACCACCCTGCAATCGATTTGCGTCAACCTTTGCTAATC
TATCATTGAAATATGATCATCCTTTATTGAAATTTGGTAAACTGGATATA
AACAAGTATGAAAAAGTTGGTCAAAAACATCGTGTTGATGTATCAGTCTC
ATCCAAGAATCTTCCCACTATCATTGTTTTTGAAAATGGGAAAGAAATTT
CACGGCAACCAACTGTCAATCCTGATGGTTCCATTAAAGCGTATCAATTC
AAGGAGGAAAATCTTATCCGTGATCTGGATTTGAATGATTTGTATGCTCG
TGCTAAACAAAGAGCTACTGATAGAAATAAAAAGAAGAATTAGGCACTGC
AAGATTTTTTTAAATACTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009067XLOC_009067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016236-proteinTCONS_00016236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016236-exon-sc0000231-1575043694:402322..402354TCONS_00016236-exon-sc0000231-1575043694:402322..402354Clytia hemisphaericaexon
TCONS_00016236-exon-sc0000231-1575043694:400540..402141TCONS_00016236-exon-sc0000231-1575043694:400540..402141Clytia hemisphaericaexon
TCONS_00016236-exon-sc0000231-1510915933:402322..402354TCONS_00016236-exon-sc0000231-1510915933:402322..402354Clytia hemisphaericaexon
TCONS_00016236-exon-sc0000231-1510915933:400540..402141TCONS_00016236-exon-sc0000231-1510915933:400540..402141Clytia hemisphaericaexon
TCONS_00016236-exon-sc0000231-1491911889:402322..402354TCONS_00016236-exon-sc0000231-1491911889:402322..402354Clytia hemisphaericaexon
TCONS_00016236-exon-sc0000231-1491911889:400540..402141TCONS_00016236-exon-sc0000231-1491911889:400540..402141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:400540..402354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5292	9.95877	19.4908	21.8303	8.09419	7.83583	11.8115	9.74658	8.04181	10.1422	8.55973	3.84893	7.38384	7.0554	8.3492	8.76502	13.4502	12.5614	5.31479	6.21973	10.0128	9.93302	10.4273	9.70605	5.65087	6.69894	9.43389	6.66843	9.17238	9.77672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
Blast
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BLAST of TCONS_00016236 vs. Swiss-Prot (Human)
Match: TMX2 (Thioredoxin-related transmembrane protein 2 OS=Homo sapiens GN=TMX2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.736e-58
Identity = 101/254 (39.76%), Postives = 164/254 (64.57%), Query Frame = 3 
Query:   51 PEMKYWLSS-HYILNTIACTIYMLTKTVHPVCISLFELDENGN-CQLDYRDTEVLFFLAMVIVLKNRKWKPLTAVEYVSNIYXXXXXXXXXXXXRQDLRWGALYAIVCLLLFIAFPEPSYTGPEKITYFRGQALDEQILHHPEETWIIEFFAPWSPPCNRFASTFANLSLKYDHPLLKFGKLDINKYEKVGQKHRVDVSVSSKNLPTIIVFENGKEISRQPTVNPDGSIKAYQFKEENLIRDLDLNDLYARAKQ 806
            P +  WL+  +Y+L+ +    ++L + + P+C  L    E+GN C  D+R+ E+L FL+ ++++KNR+   +T  +++ NI++F+K+AN +LFFR D+R G LY  +C++  +    P Y GPE I YF  + +DE++      TWI+EFFA WS  C  FA  +A+LSLKY+   L FGK+D+ +Y  V  +++V  S  +K LPT+I+F+ GKE  R+P ++  G   ++ F EEN+IR+ +LN+LY RAK+
Sbjct:   15 PRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCDFDWREVEILMFLSAIVMMKNRR--SITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLCIVFLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVIREFNLNELYQRAKK 266
The following BLAST results are available for this feature:
BLAST of TCONS_00016236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMX21.736e-5839.76Thioredoxin-related transmembrane protein 2 OS=Hom... [more]
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