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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016230 ID=TCONS_00016230|Name=TCONS_00016230|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATCTCTAATCATgctctttttttcatttctagtgtttaaataatataaaa
aattagaacataaatttttcaaaacaataaccATGAGCTCAAAACAGAGG
TCAGAAAAAGAAGAATCAAGCCAAGAGAATGCAAAAAATAGTAAAGTTGA
GGTAGCCACACAAGGAGAAGACAGGATATTGAATACATTGAAAAAGAGCG
AAAAGGAGAAATTGCAAGCTTGTTTGGATAAAGAAGGAAGTCATCTAAAA
AACTGGAGGCAAGTAGTGgataaaattttcgaaaatgacGAAGATAATAG
TAAAGCAATTGAAATAAAAGCTACTATTGAAAACATACGGTTTGGTGGGG
GTGCTGCTGGAGGGTTTTTGAAGAAGCTAGAACAGAAGTTGCCTGATCTT
ACGGTTGGTACTCTAAATGAAATATGTAAAGAGGAGGGCAGGAATGATAT
TGTTAAAGATTTGAAACGTTTTAAAGAACagcaaaaattgtttgaagttt
tggaTGCAGACGATATAAGTAAGTTGAATGTTAAAATGGATGATGATGAA
TTTTGTTTGATTGTAGCGGAATCCGAAATATTGGAGAAAGTGGCACACCA
CTTCGGCATCAAGGGTACTTTGTTCTCTCAACATGAAAAAGATAATATTA
AAGCCATTGGTCCGGGAAAATTTCAAAGCTGCACCGTGAGTTTATTGGAT
ATTTTGAATAGAGAAAGATCAGATATGACTGTAAAAGAATTAGCTAAAAT
TTGTGAAGCGTTACGAATCAACGATGCAAAAGATGCTTTGCTTAAATTGC
TTCATAAATAACATACTGTTTATGATTTTATGTGTTTATAGTACATTAGT
ATTTCTTACATGCACCCACACTGAGATAACAAAATTTGTATACCTCTGTT
AGGGATAAcgtaaaataattttgaaatacaccaaaccgtatacacgcttt
tttttataaagaatatCCTCtctaagaatatcagggtgaaaattggccaa
atcgtaagaataccctaagaatattATAGAGcgagtttcacagaatttga
taagaatacaatcattttgtatttggttaacagaaaaaaaactgCTTCTC
TTGTTAGACTTAAGATTTAAACTTTGATGTAGAAGTGTAATTTTTGCTCC
TAATGTGCACTCAAAAGTCCCAAACTGTCAAATTGATCGCAGTGATGCAG
AAAAAGTTTTAGTGAAATTGCTTTAGCGAATAACTATTTATGATTTTTAG
TGCTGTCCTCATAACTCGgacgaatgtctccttaactcgaacaagtcgTC
TTATCccttaaagtttttattttacataagtgttcccgtttcatatcaga
cacatatcatgacagtgtctgcctattgttatattatgctgatataaaca
agaaatgtttttctcttcctctttctgatcatCTTGTTCCACATGTCATC
CGtgccaatccaatgtgaaaacgcttgtaaattaaaactgATGATTAAGC
AAGtgatatcactcttatctaaaaacaaaacctttaacatcccTTACCTG
TCTTAATATTTGCGTCTCCCTCTTACGGGTCCGAGTTTTGAAGACTTCAC
TGTGATAcacataaatattttttacatgCACCACTTTATATTTAGCTTTT
ACCAATTgttattttatgaatttttatcattttg Run BLAST on NCBI transcript from alignment at sc0000231:383272..389213- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016230 ID=TCONS_00016230|Name=TCONS_00016230|organism=Clytia hemisphaerica|type=transcript|length=5942bp|location=Sequence derived from alignment at sc0000231:383272..389213- (Clytia hemisphaerica)
ATCTCTAATCATGCTCTTTTTTTCATTTCTAGTGTTTAAATAATATAAAA
AATTAGAACATAAATTTTTCAAAACAATAACCATGAGCTCAAAACAGAGT
AAGTATCCAAGTATCTATAGTTACTTTAAGGGCAGAAAGTTTCGCGAAGT
CAAAAAGTCGCGAAATTTAGCGAATTTAAGTTTCGCGAATTATGGTTTTC
GCGAATTCATATAAAATTTACCTTTTTTGGTAACAAAAACTCATAAAACA
CGCAAAAATTTAGCAAACAGTGAAAAACTGAGTAGTAAAGTTTATTTTTC
GCAAAAAAAACTTTCGTGGTTTTCAGGTTTAATTTCTTACCTGGCAGAAA
CTTTCGCGAAAAAGGATCAAAATCGTGAAAGTTTCTGCCCGCGAAAGTTT
CTGCCCTTAAAGTAATTCGACTTTTAAAATACTTAATTTTCATTGATCAT
TCTAGACAGCAGTTTTAAGCACAAGGAAATTTGGAATCTAGAATTTCGTA
GCTCGCAATTCGCTCATGTGTGCATCGTTCTTTGGTATACAGACACAGAT
GTATAGTCTTTCCAATAAAGATCAATTTTCTATTCCCTATAATGAAAAAT
AATGATGATACATATAATTATGCTATACGTTGTTTTTGTTTTTTCGGATT
TGCGGCCACCAATGCTAAAGCCCTAAAGTAATAGACCAATTTCCCATCCA
AAAGAAATGATAGTCGGCCTTTGATGTGCCGCATCCCCAGTCAACTACCC
TTGCGCATAAACCTTAAAATATTCCGAAAGCGAGGGCTTCCCACAGCAAA
AATCCTCTGGGTTATCTGCATCTGGGTGGAGAAAAATTTTCTAAGAATAA
TTAGGCTCATAGACTCCTTAAGAAGAATTTCAGAACGAAGCTGACCCCGC
ATTGCCTCAACAAAAAAAGTTTGTCGGATCTTAGAAAAAAAGAGTGTAGT
ACAAATTTGAATTGTTTTTTTTTTATCATGATTTTTGAACAGATCTTCCA
ACACAATGTTCAAGCTCAACAGTCACAATAACAACAACTACCAAAAATCT
TTTTCGTATGTAAATTATTCCAGTGCCTTTCCCTGTATAGTTTAAATAAT
TATCATTTGTCAAATGCTTTCCAAAAAATAAAGCGTACCTGTGATTAGGC
TGCTGGCATCCACTAACGGATTGCTGCTCCTTATATACTACCTGCAGTTG
AAAAATCGCTTATTTTCCTTCCAAACAAGAGTTGTAGCACGCCTTTTAAC
TGCATTTCTATTATTTTTTTAGCTGGAGTGGGTCAAATTCTAAGCACAGG
TATAAATTTTGACTATAATATTTAAAAGTGAAAAAATCAGGGGACATTTA
CTTTGACGATGATGCTATACACGATTTTTTTAGAATTTCGACCGGGACTT
AAGTGGGATAAGTGACTATCATTCCTCATCCTACAAAACCTTTGCTTCAA
TATTTAATCCCCGGCAGAATTTATGTGTTGATACACTATATTGAGCAAAA
GCCATACTGAAAACTAAAGACCATAATATTTTATTTATGAGTAATACCGG
GTGACTCACGAAAAAGTATAAGAGTTTGGAGGGTAACTGTGTCCGAAAAA
AATTGAATTTTAACTAAATTCTTTTTTCATGGTAAAGAGGAAAGGCAAAC
TTAAATTTTGATGTATCATTTTTTAATTTTGGAAAAGTAGTTATCGAGAT
ATGGAGGTATAAAGTCAAAAGTCATTATAAAAACAGTATCTCGATAACTC
TTATACTTTTTCGTGGGTCACCCGGTAGATTTCAAATGATTTTCTTGTCG
ACTTAGATGCTTTCAAATACTCTGTCGGCTTTGAATTGTTGGCTTCGAGG
CATAGTGCTGACAGTTCCATTTTTTCACCATGCTTTTGCTCATTCATTTT
TTTTAGGGTCAGAAAAAGAAGAATCAAGCCAAGAGAATGCAAAAAATAGT
AAAGGTATACTAGTATACCTATATTAACACATTCAATTGTTAAAACTGGT
TGAAAACAAAATCTTCTGAACTTCTTTTCTAAGAACCTACTTTCTCATAG
TCTCCTCTAATATAACGAATAAAGTTTGGCTCAAAAATATGCGAACACCG
TTGTACACCGTTCGAAAGATATTTTCAAGGAGGACACTCTAAAGGATTAA
TTTTTTTGAAAACTTGAAAATTGAAAAAGAAAAATAAAGATGAAAAAAAG
AAGATTCTTCCGTTTCAAATATCATGACATTAATTTTATAAGGATTATTG
GAACTTTACAAACTTCGAAAATGTGTTCTAATTTTTCGTGTTAGATAAAA
AGTTTGAAGTAGCTCATTTTAACTGTTTTTGGTCATTTTTGGCCGTCTTA
TGCCCACTTTAAAGACTTATTTTCCAGCTGAACAATCAACTGACGAAACG
CGCAATCTTGTCTGGTTTAAAAACTACAGTGCTTTTTCAAATCAATCACT
ATGTTTATTATCGATACAGACTTCGCCAATAAACTGTCAATCATTAAAAA
GCGGTTTTGATTCTTTAAAAATTCATATTACTCGTGAAATAGAACTTCTT
TTGTTAAATCGACTGATCTCTGAATAGTTGACTGGATTGTGCTTTCCATA
TTAAAGGAAGCGTGTCTTGTTTTCAATACACAAATTTCCTATTAGCAGAT
TCATGTAAAAACGTCACGAAAAAATCAAAGAGTAAAGTTATGATTGGCTG
AGACATGATTACCGCATGCTTTCGACACTTAAAAGAAAAAATATCTTATC
TGTTCAGAGCTTTACATGTTTTTTTTNTGGATTGTGCTTTCCATATTAAA
GGAAGCGTGTCTTGTTTTCAATACACAAATTTCCTATTAGCAGATTCATG
TAAAAACGTCACGAAAAAATCAAAGAGTAAAGTTATGATTGGCTGAGACA
TGATTACCGCATGCTTTCGACACTTAAAAGAAAAAATATCTTATCTGTTC
AGAGCTTTACATGTTGTTTTTTTTAAATAAGAATATATTTGTAAGAATGT
CCATGATGAAAATGGCCAAAAAAATAAGAATATGCTAAGAATATCACTAT
CATGGAATTTTGCTACTCAAGCTAAGAATGCTATTTTTAGAGCGTTTTCA
ATTATAAATTGTCATCAATTACCCCCCAAGTAAGGCTCACTTCTTTTACA
AAAATGCCATTTTATGCTTGAGACTTATGTACTAAATGTTTAATCTAGTC
TGAATTAGGAACCTAACCTAGGAATGCTGTAAGAATATTTTAGGATGATT
TTCCCAAAAAAGTTAAGAATATCCATGATGAAACACCATTCTTATAAAAA
AAGCGTTTACTCGACGTTTTTTTGTGACTTTTCTCCCATGAATCTGCTAC
TGTAATAGGGAATTCGTGTATCCCGATCGCCAACAGCGCAACCAGTAGGT
TTTGAAACTCGAACTTTCCAGAATCTAAGTATGTAAAGTCTCATGTAAAA
GTGATTTCAGTTTTTCGATTGACTCTTTTGCAGGCCCTAACAAGGATCGC
ATTTATTTGAGACTATACATGAAAATCAAAAAAATTAAAAAAATCATTTT
GTAAAAAGCTGTATAATATTTGAAAAAGCTCACTTTGTTTTGTTTTTCTT
TTCCTGTGTATAGGGTAAGTCAATTAATGATTTTGTTGCGATACCTACAT
ACGTAAAGCTTTAGCAAGGGTTGCCACTAGCAATTCATTGGTTTATTTTG
TATCCAAACGCTAAAAGGACTCTACTCTTGAGCTAAGGATTGCCGCCAAA
ATGTCAGTAATACTTACACAAGTGTCATCCAATTTTGTTCTAAAACATCA
TCAAAATGACAGGGTGTTTAGAACTTTAAATTGTCGTATTTCCATACGTT
TTTGAGTATGAGACTTGTTGTAGTACTTTTTTTGCTCGGAATTTCATACA
CTATCCGATGGTTATCCACCGTTTTAGTTGAATACGAAAGAATTTTGTGT
GGTTGTGTTCTAGAAAAGATGTCACGGATACTACCGTCAACTGCTCTAAC
TTGGGACAATTGGTCGAAACATGGTACTGGTTGATATCTGGTCTGTATTT
TTCACTTACTGTTAAATCTCTTTGACAACAAATTTGTTTTGGTAACTCCA
CCAAGTTTATCAATCATACTTATTCGTTCCTCTTAGAATGCACAGACACT
CGTGTGTGTTCCACAACGGATTTTTTTCATATTTCGATTTAAAAGCCTAC
TCGGTGCGAAAGAAAAATCGTGTATTTTTTAATACGCCGTGCATTAACTC
AAATCAAATGACTTTGGAGGTTCGGTGAAATGCTGGCCGAATTGCCGTCC
CATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACGGTGAGTGTTTT
CCCTCTAGTATAAATACACAACACTTAATTTATTTGATGAACTATTCTTT
TCAGTTGAGGTAGCCACACAAGGAGAAGACAGGATATTGAATACATTGAA
AAAGAGCGAAAAGGAGAAATTGCAAGCTTGTTTGGATAAAGAAGGAAGTC
ATCTAAAAAACTGGAGGCAAGTAGTGGATAAAATTTTCGAAAATGACGAA
GATAATAGTAAAGCAATTGAAATAAAAGCTACTATTGAAAACATACGGTT
TGGTGGGGGTGCTGCTGGAGGGTTTTTGAAGAAGCTAGAACAGAAGTTGC
CTGATCTTACGGTTGGTACTCTAAATGAAATATGTAAAGAGGAGGGCAGG
AATGATATTGTTAAAGATTTGAAACGTTTTAAAGAACAGCAAAAATTGTT
TGAAGTTTTGGATGCAGACGATATAAGTAAGTTGAATGTTAAAATGGATG
ATGATGAATTTTGTTTGATTGTAGCGGAATCCGAAATATTGGAGAAAGTG
GCACACCACTTCGGCATCAAGGGTACTTTGTTCTCTCAACATGAAAAAGA
TAATATTAAAGCCATTGGTCCGGGAAAATTTCAAAGCTGCACCGTGAGTT
TATTGGATATTTTGAATAGAGAAAGATCAGATATGACTGTAAAAGAATTA
GCTAAAATTTGTGAAGCGTTACGAATCAACGATGCAAAAGATGCTTTGCT
TAAATTGCTTCATAAATAACATACTGTTTATGATTTTATGTGTTTATAGT
ACATTAGTATTTCTTACATGCACCCACACTGAGATAACAAAATTTGTATA
CCTCTGTTAGGGATAACGTAAAATAATTTTGAAATACACCAAACCGTATA
CACGCTTTTTTTTATAAAGAATATCCTCTCTAAGAATATCAGGGTGAAAA
TTGGCCAAATCGTAAGAATACCCTAAGAATATTATAGAGCGAGTTTCACA
GAATTTGATAAGAATACAATCATTTTGTATTTGGTTAACAGAAAAAAAAC
TGCTTCTCTTGTTAGACTTAAGATTTAAACTTTGATGTAGAAGTGTAATT
TTTGCTCCTAATGTGCACTCAAAAGTCCCAAACTGTCAAATTGATCGCAG
TGATGCAGAAAAAGTTTTAGTGAAATTGCTTTAGCGAATAACTATTTATG
ATTTTTAGTGCTGTCCTCATAACTCGGACGAATGTCTCCTTAACTCGAAC
AAGTCGTCTTATCCCTTAAAGTTTTTATTTTACATAAGTGTTCCCGTTTC
ATATCAGACACATATCATGACAGTGTCTGCCTATTGTTATATTATGCTGA
TATAAACAAGAAATGTTTTTCTCTTCCTCTTTCTGATCATCTTGTTCCAC
ATGTCATCCGTGCCAATCCAATGTGAAAACGCTTGTAAATTAAAACTGAT
GATTAAGCAAGTGATATCACTCTTATCTAAAAACAAAACCTTTAACATCC
CTTACCTGTCTTAATATTTGCGTCTCCCTCTTACGGGTCCGAGTTTTGAA
GACTTCACTGTGATACACATAAATATTTTTTACATGCACCACTTTATATT
TAGCTTTTACCAATTGTTATTTTATGAATTTTTATCATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016230-exon-sc0000231-1575043694:389116..389213 | TCONS_00016230-exon-sc0000231-1575043694:389116..389213 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1575043694:387260..387307 | TCONS_00016230-exon-sc0000231-1575043694:387260..387307 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1575043694:383272..384809 | TCONS_00016230-exon-sc0000231-1575043694:383272..384809 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1510915933:389116..389213 | TCONS_00016230-exon-sc0000231-1510915933:389116..389213 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1510915933:387260..387307 | TCONS_00016230-exon-sc0000231-1510915933:387260..387307 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1510915933:383272..384809 | TCONS_00016230-exon-sc0000231-1510915933:383272..384809 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1491911889:389116..389213 | TCONS_00016230-exon-sc0000231-1491911889:389116..389213 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1491911889:387260..387307 | TCONS_00016230-exon-sc0000231-1491911889:387260..387307 | Clytia hemisphaerica | exon |
| TCONS_00016230-exon-sc0000231-1491911889:383272..384809 | TCONS_00016230-exon-sc0000231-1491911889:383272..384809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:383272..389213 - |
Blast
The following BLAST results are available for this feature:
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