TCONS_00016173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016173
Unique NameTCONS_00016173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016173 ID=TCONS_00016173|Name=TCONS_00016173|organism=Clytia hemisphaerica|type=transcript|length=274bp
GTTGTAGACGACCTTGCAGAATGGATAACGCAGGATAACGCAGAACGAAT
ACAATACGATCGAGATTTCttattgaaattccaattcAACCCAATTTGCA
CCTCAAAACCAGCCAACTTACCAAACATTGATATCGTTCTTGATACTGCT
CATCAGCCAACAAAACCCTTAGTTCCTGGTCAAAggtatttttttcatgt
ttAGAATGAATCCTACAAGCCTATGTTTTTTAGCAGTTACACTGTCTTGA
ATGCCTGAATGATGTAAACGGTGC
Run BLAST on NCBI

transcript from alignment at sc0000226:143523..143796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016173 ID=TCONS_00016173|Name=TCONS_00016173|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0000226:143523..143796 (Clytia hemisphaerica)
GCACCGTTTACATCATTCAGGCATTCAAGACAGTGTAACTGCTAAAAAAC
ATAGGCTTGTAGGATTCATTCTaaacatgaaaaaaataccTTTGACCAGG
AACTAAGGGTTTTGTTGGCTGATGAGCAGTATCAAGAACGATATCAATGT
TTGGTAAGTTGGCTGGTTTTGAGGTGCAAATTGGGTTgaattggaatttc
aataaGAAATCTCGATCGTATTGTATTCGTTCTGCGTTATCCTGCGTTAT
CCATTCTGCAAGGTCGTCTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009033XLOC_009033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016173-exon-sc0000226-1491911889:143523..143796TCONS_00016173-exon-sc0000226-1491911889:143523..143796Clytia hemisphaericaexon
TCONS_00016173-exon-sc0000226-1510915933:143523..143796TCONS_00016173-exon-sc0000226-1510915933:143523..143796Clytia hemisphaericaexon
TCONS_00016173-exon-sc0000226-1575043694:143523..143796TCONS_00016173-exon-sc0000226-1575043694:143523..143796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:143523..143796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.287	2.09025	4.24721	1.78081	0	0.571053	0	0	4.55803	5.11632	2.72161	2.8754	13.9203	8.57683	5.49565	7.3004	6.09637	4.55627	12.6674	11.3829	6.23577	4.54892	5.52981	5.586	1.15069	0	5.87832	6.2735	5.35301	3.02993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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