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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016144 ID=TCONS_00016144|Name=TCONS_00016144|organism=Clytia hemisphaerica|type=transcript|length=1112bp
AAAGACGTTATGGGCGCGTTAAAAATCAAACTATAGATTTTTTATACAAT
TCTAGGCTTGTAAAAAAATGACGACTGAAGAATTACTGAATAAATTGGAT
CAAATATGCAAGTGTGGGGTATGTTTAGAGCGTTTCCATGAACCAAAACA
GTTAGTATGTCAACATATATTCTGTCAACAATGTCTAATGCAGGCTTGTG
TCACCAACAAGATGGGTCTTATGACGTTGTTTTGCCCGACATGTCGAGAA
CGTCAGCCGTTAGTTTATCGATCATTTGACGTGATGAAATTGAAGCCGTC
ATTCTTCGTGAATCAAATCTTAGAAGTATTGGTAGAATTTGCAGTTGGGA
ACGGCAAACTGTTACCACACTCCCTGTCGACACCACAGAAACTTCTCAAC
ACCAAGATCACCAGCGTTTACAAATCCATCAATACTGATACTTTGGAACA
CATGACTCAAATCAGAACGGACGAATTCGGTGTCCGAGATTTGAAAGTCC
AAGAACTCGAAGAGCAAGTACAACGCTCGAAAGAAATCAATTCTCAACTA
CTTATTGATAATTATATTATGAAAGCTAAACTTGGTGAGCCATTAGATCA
GTCTTCAGACTCGAACTTAAAACAAGCTTCACGCGAAGTGTCCATAAAGA
AGAATATATCACAAGATAGTGAATCAGTATCGAATACAAAATGCAAACAA
TTACAAATTAGTGATATTGAAAAAACACAAGGTACCAGTCATATTGAAGC
AAAATTGAACCGATATTTACGAAAAAAGGCTTTGAACAATATTCAAAGAG
AGGTTGACGATCAGAAATGTGACcaggaaaaatctaaaattactgaaaat
gaaaatgttattCCAATTAAAAAAGATACTAAACCTAAGGGCAAGAAACA
CATAGAGAAGGATAAAGTTGAAACACGAAAGGAATCAAATGTCGAAGAGT
CACCAAGAGATTTTTGTTGGCGATGTCTGAGACGTGGTCACACAGGAGTT
GAATGCaaggaaaataaaacaatactAGGTCGATACATTTGCAGCAAATG
TGATAAAGTTGGACATAACTCAAATCATTGTCAGTTAACGGCTGGTCATT
CGATCGTTGATT Run BLAST on NCBI protein sequence of TCONS_00016144-protein >TCONS_00016144-protein ID=TCONS_00016144-protein|Name=TCONS_00016144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MTTEELLNKLDQICKCGVCLERFHEPKQLVCQHIFCQQCLMQACVTNKMG
LMTLFCPTCRERQPLVYRSFDVMKLKPSFFVNQILEVLVEFAVGNGKLLP
HSLSTPQKLLNTKITSVYKSINTDTLEHMTQIRTDEFGVRDLKVQELEEQ
VQRSKEINSQLLIDNYIMKAKLGEPLDQSSDSNLKQASREVSIKKNISQD
SESVSNTKCKQLQISDIEKTQGTSHIEAKLNRYLRKKALNNIQREVDDQK
CDQEKSKITENENVIPIKKDTKPKGKKHIEKDKVETRKESNVEESPRDFC
WRCLRRGHTGVECKENKTILGRYICSKCDKVGHNSNHCQLTAGHSIVD Run BLAST on NCBI transcript from alignment at sc0000226:267349..268954- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016144 ID=TCONS_00016144|Name=TCONS_00016144|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at sc0000226:267349..268954- (Clytia hemisphaerica)
AAAGACGTTATGGGCGCGTTAAAAATCAAACTATAGATTTTTTATACAAT
TCTAGGCTTGTAAAAAAATGACGACTGAAGAATTACTGAATAAATTGGAT
CAAATATGCAAGTGTGGGGTATGTTTAGAGCGTTTCCATGAACCAAAACA
GTTAGTATGTCAACATATATTCTGTCAACAATGTCTAATGCAGGCTTGTG
TCACCAACAAGATGGGTCTTATGACGTTGTTTTGCCCGACATGTCGAGAA
CGTCAGCCGTTAGTTTATCGATCATTTGACGTGATGAAATTGAAGCCGTC
ATTCTTCGTGAATCAAATCTTAGAAGTATTGGTAGAATTTGCAGTTGGGT
AAGAAATACTAAAGTCTTGCATCCAAACTTGTGTAGTTTTGTGAATTGCA
CTTTCATATAAAAGATGTCGGTTTTAAAAATGATTCAATCTGTTCAAACC
ATATACGTAAGGTATTCGAGGTAAATTTTCCATATCACCACATAACTTCC
AATAGCTTAGAACACCCCTGCCTCACAGCCCTGGTGGAACTTTTTCCTCA
GTGGGAAATCTCAATGGGGATAGAAATTTTATTGTTCCAAGGTTAAAAAA
TCCAGTAGAGATGGTTTTGGAGTGCAATTTTTAAACATTAGATCTAGAAT
GGGGATGACATCAAAGTCAAATTCCCAGTGGGGCTGAAATTCCAGGGTAT
TTTCCCACCGGGGACGAAATTTTTGCCAAACTTTCTAGGGGGCTGGGGTC
CCAGCGGGTCTGTGACATAGGGGTGTCTTAGAGCAGTCGTAACATTTTTT
ATACGTCATTGATTTGCTGAGATTGTTTCCATTGATTTTCAGGAACGGCA
AACTGTTACCACACTCCCTGTCGACACCACAGAAACTTCTCAACACCAAG
ATCACCAGCGTTTACAAATCCATCAATACTGATACTTTGGAACACATGAC
TCAAATCAGAACGGACGAATTCGGTGTCCGAGATTTGAAAGTCCAAGAAC
TCGAAGAGCAAGTACAACGCTCGAAAGAAATCAATTCTCAACTACTTATT
GATAATTATATTATGAAAGCTAAACTTGGTGAGCCATTAGATCAGTCTTC
AGACTCGAACTTAAAACAAGCTTCACGCGAAGTGTCCATAAAGAAGAATA
TATCACAAGATAGTGAATCAGTATCGAATACAAAATGCAAACAATTACAA
ATTAGTGATATTGAAAAAACACAAGGTACCAGTCATATTGAAGCAAAATT
GAACCGATATTTACGAAAAAAGGCTTTGAACAATATTCAAAGAGAGGTTG
ACGATCAGAAATGTGACCAGGAAAAATCTAAAATTACTGAAAATGAAAAT
GTTATTCCAATTAAAAAAGATACTAAACCTAAGGGCAAGAAACACATAGA
GAAGGATAAAGTTGAAACACGAAAGGAATCAAATGTCGAAGAGTCACCAA
GAGATTTTTGTTGGCGATGTCTGAGACGTGGTCACACAGGAGTTGAATGC
AAGGAAAATAAAACAATACTAGGTCGATACATTTGCAGCAAATGTGATAA
AGTTGGACATAACTCAAATCATTGTCAGTTAACGGCTGGTCATTCGATCG
TTGATT Coding sequence (CDS) from alignment at sc0000226:267349..268954- >TCONS_00016144 ID=TCONS_00016144|Name=TCONS_00016144|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000226:267349..268954- (Clytia hemisphaerica)
GAACGGCAAACTGTTACCACACTCCCTGTCGACACCACAGAAACTTCTCA
ACACCAAGATCACCAGCGTTTACAAATCCATCAATACTGATACTTTGGAA
CACATGACTCAAATCAGAACGGACGAATTCGGTGTCCGAGATTTGAAAGT
CCAAGAACTCGAAGAGCAAGTACAACGCTCGAAAGAAATCAATTCTCAAC
TACTTATTGATAATTATATTATGAAAGCTAAACTTGGTGAGCCATTAGAT
CAGTCTTCAGACTCGAACTTAAAACAAGCTTCACGCGAAGTGTCCATAAA
GAAGAATATATCACAAGATAGTGAATCAGTATCGAATACAAAATGCAAAC
AATTACAAATTAGTGATATTGAAAAAACACAAGGTACCAGTCATATTGAA
GCAAAATTGAACCGATATTTACGAAAAAAGGCTTTGAACAATATTCAAAG
AGAGGTTGACGATCAGAAATGTGACCAGGAAAAATCTAAAATTACTGAAA
ATGAAAATGTTATTCCAATTAAAAAAGATACTAAACCTAAGGGCAAGAAA
CACATAGAGAAGGATAAAGTTGAAACACGAAAGGAATCAAATGTCGAAGA
GTCACCAAGAGATTTTTGTTGGCGATGTCTGAGACGTGGTCACACAGGAG
TTGAATGCAAGGAAAATAAAACAATACTAGGTCGATACATTTGCAGCAAA
TGTGATAAAGTTGGACATAACTCAAATCATTGTCAGTTAACGGCTGGTCA
TTCGATCGTTGATATGACGACTGAAGAATTACTGAATAAATTGGATCAAA
TATGCAAGTGTGGGGTATGTTTAGAGCGTTTCCATGAACCAAAACAGTTA
GTATGTCAACATATATTCTGTCAACAATGTCTAATGCAGGCTTGTGTCAC
CAACAAGATGGGTCTTATGACGTTGTTTTGCCCGACATGTCGAGAACGTC
AGCCGTTAGTTTATCGATCATTTGACGTGATGAAATTGAAGCCGTCATTC
TTCGTGAATCAAATCTTAGAAGTATTGGTAGAATTTGCAGTTGGGAACGG
CAAACTGTTACCACACTCCCTGTCGACACCACAGAAACTTCTCAACACCA
AGATCACCAGCGTTTACAAATCCATCAATACTGATACTTTGGAACACATG
ACTCAAATCAGAACGGACGAATTCGGTGTCCGAGATTTGAAAGTCCAAGA
ACTCGAAGAGCAAGTACAACGCTCGAAAGAAATCAATTCTCAACTACTTA
TTGATAATTATATTATGAAAGCTAAACTTGGTGAGCCATTAGATCAGTCT
TCAGACTCGAACTTAAAACAAGCTTCACGCGAAGTGTCCATAAAGAAGAA
TATATCACAAGATAGTGAATCAGTATCGAATACAAAATGCAAACAATTAC
AAATTAGTGATATTGAAAAAACACAAGGTACCAGTCATATTGAAGCAAAA
TTGAACCGATATTTACGAAAAAAGGCTTTGAACAATATTCAAAGAGAGGT
TGACGATCAGAAATGTGACCAGGAAAAATCTAAAATTACTGAAAATGAAA
ATGTTATTCCAATTAAAAAAGATACTAAACCTAAGGGCAAGAAACACATA
GAGAAGGATAAAGTTGAAACACGAAAGGAATCAAATGTCGAAGAGTCACC
AAGAGATTTTTGTTGGCGATGTCTGAGACGTGGTCACACAGGAGTTGAAT
GCAAGGAAAATAAAACAATACTAGGTCGATACATTTGCAGCAAATGTGAT
AAAGTTGGACATAACTCAAATCATTGTCAGTTAACGGCTGGTCATTCGAT
CGTTGATATGACGACTGAAGAATTACTGAATAAATTGGATCAAATATGCA
AGTGTGGGGTATGTTTAGAGCGTTTCCATGAACCAAAACAGTTAGTATGT
CAACATATATTCTGTCAACAATGTCTAATGCAGGCTTGTGTCACCAACAA
GATGGGTCTTATGACGTTGTTTTGCCCGACATGTCGAGAACGTCAGCCGT
TAGTTTATCGATCATTTGACGTGATGAAATTGAAGCCGTCATTCTTCGTG
AATCAAATCTTAGAAGTATTGGTAGAATTTGCAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016144-exon-sc0000226-1575043694:268607..268954 | TCONS_00016144-exon-sc0000226-1575043694:268607..268954 | Clytia hemisphaerica | exon |
| TCONS_00016144-exon-sc0000226-1575043694:267349..268112 | TCONS_00016144-exon-sc0000226-1575043694:267349..268112 | Clytia hemisphaerica | exon |
| TCONS_00016144-exon-sc0000226-1510915933:268607..268954 | TCONS_00016144-exon-sc0000226-1510915933:268607..268954 | Clytia hemisphaerica | exon |
| TCONS_00016144-exon-sc0000226-1510915933:267349..268112 | TCONS_00016144-exon-sc0000226-1510915933:267349..268112 | Clytia hemisphaerica | exon |
| TCONS_00016144-exon-sc0000226-1491911889:268607..268954 | TCONS_00016144-exon-sc0000226-1491911889:268607..268954 | Clytia hemisphaerica | exon |
| TCONS_00016144-exon-sc0000226-1491911889:267349..268112 | TCONS_00016144-exon-sc0000226-1491911889:267349..268112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:267349..268954 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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