TCONS_00016139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016139
Unique NameTCONS_00016139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016139 ID=TCONS_00016139|Name=TCONS_00016139|organism=Clytia hemisphaerica|type=transcript|length=1642bp
gtaagctcgatccaatccttttttgatacattttttaCTATCGTCTACAG
ATAGGTGTGAAAAAGGAccgggacggttttagtgggataaagcggacaaa
aaaatgcccccgcggcaattggcggctacggtcgaaaaggtgtataagaT
AATATTTATGAGTTGTTCTTTCTAGGCTGATAAACAAAGGGCACACTGTA
GAGTTgattaaaattgaataaaaaaacaaacaaacatacCATTAGAATGC
CTTGCTGTTACAATACAACTCGTTCATTCGTTCTATTCTTCTTACTGATT
GGCTTAGTTGGTGTGGTGTTGGCTGGAGTTGTGGATTTCTGGTGGAAAAG
CGATCTACAAGATAAATACGGTGATGCTGTTACTGAAGAAATGGGTTTAT
GGCGAACTTGTGGAGGTATTTCAATCATTTCAAATATCAAACATTCGTCC
TGTATTCAACGTAAAAGTTTATTCAAATTCGAAGAAGATGTTCTTGATTT
CAatttggaTCTCATCTTGACTGGATTAGTTGGCGGAGCATTCTTTACTT
TTGTTTCACTTATAATGATCGCCATTTCCATGTGTCAGAAATATCCTTCC
AAAGTTTTGATGGTTTTTCATCTTATCTTCTTATTGCTCGGAGCTGCAGG
AGGTGTATTTGGACTTGTATGGGCATTGATTAAAGTTGAAGATCGCACGC
AAGACTGGGCATTCTATGTCTTATACGGAGCTAATGGAAGTCTCGTGCTT
TCCTTCGCTCTTTCGCTCATTCTTTTGTGCGCGCGGGCGCCTGGTTATTA
CTTAGTCAAACGTGATGACGATTAATGAAATCATGTAAAAACTTGTACGT
GTGTCCACAGACCTTTATATAGAGGTGTAGAAATATTAGAAAATGTTGAT
GGTGTGGTCGTGTTTACTAAACAAGAACGAAATTCTTTAACGATTTcgtg
aatgaaaaaaattgaaaatggagCAAGAAGTGTTGCTATATGAACAACTC
AAATTATTATTGGTTCAGATGGTTTTAAAAcaaacactattgaaaaagcc
CACGTGACGTGGTATGGACAAGACATTTTTTGAGATTTCCACTTACTCTT
AAAAATGCAGTTTCGTTGGTTTATAGCGTTGGTGTCGACGTGACGTAGCA
TTAGAACATTATTTTGAACTATCGAGATTTTCTATGATTTGAGTAAtcga
gaaaattaaaaataaacgaATGTtttattaaaagcaatgatGCTTTTAAG
TAAAGCAATTTTCATTTAACACATACCAGGCTAAAACTAAAATGGTAGCG
GTAAGGTACTGTAAAGTTCTTTTGAAAAGCAGAATTAATCTACCATTCCA
ATCATTATTTAAACCTTCAAGGATCCAATTATCGGTATATATCCACAATA
TTTTTAATGTGAgtcctttttaatttttactgaCTGACTAGAGTTTTAGG
TACCTATTTAACAGTACTCAAATGTTGAAGAGATTACAGTTTTTAGTAGA
CTTGCACCTTATCGAGTGGTAGTACCATTTAATTGAATTTTGTAAATTCT
AAAATCAAATGTATAAAATATCTATATTGTATCTTagacaaaaatatata
aataaattgaaataaaaaattcttaacTAAAATCAAGTATTG
Run BLAST on NCBI

protein sequence of TCONS_00016139-protein

>TCONS_00016139-protein ID=TCONS_00016139-protein|Name=TCONS_00016139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MPCCYNTTRSFVLFFLLIGLVGVVLAGVVDFWWKSDLQDKYGDAVTEEMG
LWRTCGGISIISNIKHSSCIQRKSLFKFEEDVLDFNLDLILTGLVGGAFF
TFVSLIMIAISMCQKYPSKVLMVFHLIFLLLGAAGGVFGLVWALIKVEDR
TQDWAFYVLYGANGSLVLSFALSLILLCARAPGYYLVKRDDD
Run BLAST on NCBI

transcript from alignment at sc0000226:216539..219215-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016139 ID=TCONS_00016139|Name=TCONS_00016139|organism=Clytia hemisphaerica|type=transcript|length=2677bp|location=Sequence derived from alignment at sc0000226:216539..219215- (Clytia hemisphaerica)
GTAAGCTCGATCCAATCCTTTTTTGATACATTTTTTACTATCGTCTACAG
ATAGGTGTGAAAAAGGACCGGGACGGTTTTAGTGGGATAAAGCGGACAAA
AAAATGCCCCCGCGGCAATTGGCGGCTACGGTCGAAAAGGTGTATAAGAT
AATATTTATGAGTTGTTCTTTCTAGGCTGATAAACAAAGGGCACACTGTA
GAGTTGATTAAAATTGAATAAAAAAACAAACAAACATACCATTAGAATGC
CTTGCTGTTACAATACAACTCGTTCATTCGTTCTATTCTTCTTACTGATT
GGCTTAGTTGGTGTGGTGTTGGCTGGAGTTGTGGATTTCTGGTGGAAAAG
CGATCTACAAGATAAATACGGTGATGCTGTTACTGAAGAAATGGGTAAGG
GTCAACCTTTGTCTGCCATCAACGGACGTTAAACCGTGCAGTAAGTAAGT
AAGTATCTCAGCCAGAAATAGACTTAAAACAACAAATTAGGCAAGACTCT
TCGAATTTTGCAAAGTTACGTAAGAGCCTTTTAGTACCTCGCTGTGGCGG
AAGACTTGTAAACTGATAAATATGTTGAACGGTGAAAAAGAATGCGGTTA
TTACATTTTGACTTTTTCCCGACATATTTCAGACTCGGTCCCTTCTCAAG
GGAAACTGATAAATATTTATAGCCTATTGAAGAAATATCATTGAAAACGA
AATCTCGAAGTGATAAAAATAGATTTCAAGCCCACAGATTGCATTCACAC
AATAACAGCCAAAGACACCAATTTTAATTTCTGAAAACTCGTCAGAAACG
TCAGTAAATCTACTACGAATTTGTTTTTCTCATCTCAGGTTTATGGCGAA
CTTGTGGAGGTATTTCAATCATTTCAAATATCAAACATTCGTCCTGTATT
CAACGTAAAAGTTTATTCAAATTCGAAGAAGATGTTCTTGATTTCAGTAA
GTAAAATTTAACAACCATCATGAATCGTAAAGCGTGAATCAGGGGATCAA
TATTCATGATGAGCGTCCGTTATTCACACAATTTCAGTCCGCTCAGTTTT
ATAACTACAAAGATTTAGAACGCCTGCTACAACGAAAATGTCACTTCCAA
AAAAAGCGTTTTGGAGAATCATTTAAAAACTAATTTCAAGACTTTTATAC
TCAACATTATAATGATCGAATGAAATTTTGCTGGACTGAACACAGTTCAA
ATGAACCTCCGAAATTTCAAAAAAAAAAATAAGAAAAAGGGAGAAATTTG
TTTCAACAAAAACATAAACCTTGCCTTTTTCTTTAGATTTGGATCTCATC
TTGACTGGATTAGTTGGCGGAGCATTCTTTACTTTTGTTTCACTTATAAT
GATCGCCATTTCCATGTGTCAGAAATATCCTTCCAAAGTTTTGATGGTTT
TTCATCTTATCTTCTTATTGCTCGGAGGTAAGTGAGAACGACAGAATATT
TATATTATTTTTCTTGGTATCTTTTACTGAAAAGGAGAAAACAGGTTTCT
AATAAACGTTGCCTTGCTCTCAAAGTATTCTTTATCGTTAGGCTGATTGA
ATTTATTTACTGCACCTAACCTTTCCCAAATATCAATTTACAATCACGAA
GAATTTGATTGAAAAAATGCGGAGTTAAAGAAGTAAATAATGTTTAATAA
TAATAATGTTTTTCTTATCCAATTTCAGCTGCAGGAGGTGTATTTGGACT
TGTATGGGCATTGATTAAAGTTGAAGATCGCACGCAAGACTGGGCATTCT
ATGTCTTATACGGAGCTAATGGAAGTCTCGTGCTTTCCTTCGCTCTTTCG
CTCATTCTTTTGTGCGCGCGGGCGCCTGGTTATTACTTAGTCAAACGTGA
TGACGATTAATGAAATCATGTAAAAACTTGTACGTGTGTCCACAGACCTT
TATATAGAGGTGTAGAAATATTAGAAAATGTTGATGGTGTGGTCGTGTTT
ACTAAACAAGAACGAAATTCTTTAACGATTTCGTGAATGAAAAAAATTGA
AAATGGAGCAAGAAGTGTTGCTATATGAACAACTCAAATTATTATTGGTT
CAGATGGTTTTAAAACAAACACTATTGAAAAAGCCCACGTGACGTGGTAT
GGACAAGACATTTTTTGAGATTTCCACTTACTCTTAAAAATGCAGTTTCG
TTGGTTTATAGCGTTGGTGTCGACGTGACGTAGCATTAGAACATTATTTT
GAACTATCGAGATTTTCTATGATTTGAGTAATCGAGAAAATTAAAAATAA
ACGAATGTTTTATTAAAAGCAATGATGCTTTTAAGTAAAGCAATTTTCAT
TTAACACATACCAGGCTAAAACTAAAATGGTAGCGGTAAGGTACTGTAAA
GTTCTTTTGAAAAGCAGAATTAATCTACCATTCCAATCATTATTTAAACC
TTCAAGGATCCAATTATCGGTATATATCCACAATATTTTTAATGTGAGTC
CTTTTTAATTTTTACTGACTGACTAGAGTTTTAGGTACCTATTTAACAGT
ACTCAAATGTTGAAGAGATTACAGTTTTTAGTAGACTTGCACCTTATCGA
GTGGTAGTACCATTTAATTGAATTTTGTAAATTCTAAAATCAAATGTATA
AAATATCTATATTGTATCTTAGACAAAAATATATAAATAAATTGAAATAA
AAAATTCTTAACTAAAATCAAGTATTG

Coding sequence (CDS) from alignment at sc0000226:216539..219215-

>TCONS_00016139 ID=TCONS_00016139|Name=TCONS_00016139|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000226:216539..219215- (Clytia hemisphaerica)
CTGCAGGAGGTGTATTTGGACTTGTATGGGCATTGATTAAAGTTGAAGAT
CGCACGCAAGACTGGGCATTCTATGTCTTATACGGAGCTAATGGAAGTCT
CGTGCTTTCCTTCGCTCTTTCGCTCATTCTTTTGTGCGCGCGGGCGCCTG
GTTATTACTTAGTCAAACGTGATGACGATTAAATTTGGATCTCATCTTGA
CTGGATTAGTTGGCGGAGCATTCTTTACTTTTGTTTCACTTATAATGATC
GCCATTTCCATGTGTCAGAAATATCCTTCCAAAGTTTTGATGGTTTTTCA
TCTTATCTTCTTATTGCTCGGAGGTTTATGGCGAACTTGTGGAGGTATTT
CAATCATTTCAAATATCAAACATTCGTCCTGTATTCAACGTAAAAGTTTA
TTCAAATTCGAAGAAGATGTTCTTGATTTCAATGCCTTGCTGTTACAATA
CAACTCGTTCATTCGTTCTATTCTTCTTACTGATTGGCTTAGTTGGTGTG
GTGTTGGCTGGAGTTGTGGATTTCTGGTGGAAAAGCGATCTACAAGATAA
ATACGGTGATGCTGTTACTGAAGAAATGGCTGCAGGAGGTGTATTTGGAC
TTGTATGGGCATTGATTAAAGTTGAAGATCGCACGCAAGACTGGGCATTC
TATGTCTTATACGGAGCTAATGGAAGTCTCGTGCTTTCCTTCGCTCTTTC
GCTCATTCTTTTGTGCGCGCGGGCGCCTGGTTATTACTTAGTCAAACGTG
ATGACGATTAAATTTGGATCTCATCTTGACTGGATTAGTTGGCGGAGCAT
TCTTTACTTTTGTTTCACTTATAATGATCGCCATTTCCATGTGTCAGAAA
TATCCTTCCAAAGTTTTGATGGTTTTTCATCTTATCTTCTTATTGCTCGG
AGGTTTATGGCGAACTTGTGGAGGTATTTCAATCATTTCAAATATCAAAC
ATTCGTCCTGTATTCAACGTAAAAGTTTATTCAAATTCGAAGAAGATGTT
CTTGATTTCAATGCCTTGCTGTTACAATACAACTCGTTCATTCGTTCTAT
TCTTCTTACTGATTGGCTTAGTTGGTGTGGTGTTGGCTGGAGTTGTGGAT
TTCTGGTGGAAAAGCGATCTACAAGATAAATACGGTGATGCTGTTACTGA
AGAAATGGCTGCAGGAGGTGTATTTGGACTTGTATGGGCATTGATTAAAG
TTGAAGATCGCACGCAAGACTGGGCATTCTATGTCTTATACGGAGCTAAT
GGAAGTCTCGTGCTTTCCTTCGCTCTTTCGCTCATTCTTTTGTGCGCGCG
GGCGCCTGGTTATTACTTAGTCAAACGTGATGACGATTAAATTTGGATCT
CATCTTGACTGGATTAGTTGGCGGAGCATTCTTTACTTTTGTTTCACTTA
TAATGATCGCCATTTCCATGTGTCAGAAATATCCTTCCAAAGTTTTGATG
GTTTTTCATCTTATCTTCTTATTGCTCGGAGGTTTATGGCGAACTTGTGG
AGGTATTTCAATCATTTCAAATATCAAACATTCGTCCTGTATTCAACGTA
AAAGTTTATTCAAATTCGAAGAAGATGTTCTTGATTTCAATGCCTTGCTG
TTACAATACAACTCGTTCATTCGTTCTATTCTTCTTACTGATTGGCTTAG
TTGGTGTGGTGTTGGCTGGAGTTGTGGATTTCTGGTGGAAAAGCGATCTA
CAAGATAAATACGGTGATGCTGTTACTGAAGAAATGGCTGCAGGAGGTGT
ATTTGGACTTGTATGGGCATTGATTAAAGTTGAAGATCGCACGCAAGACT
GGGCATTCTATGTCTTATACGGAGCTAATGGAAGTCTCGTGCTTTCCTTC
GCTCTTTCGCTCATTCTTTTGTGCGCGCGGGCGCCTGGTTATTACTTAGT
CAAACGTGATGACGATTAAATTTGGATCTCATCTTGACTGGATTAGTTGG
CGGAGCATTCTTTACTTTTGTTTCACTTATAATGATCGCCATTTCCATGT
GTCAGAAATATCCTTCCAAAGTTTTGATGGTTTTTCATCTTATCTTCTTA
TTGCTCGGAGGTTTATGGCGAACTTGTGGAGGTATTTCAATCATTTCAAA
TATCAAACATTCGTCCTGTATTCAACGTAAAAGTTTATTCAAATTCGAAG
AAGATGTTCTTGATTTCAATGCCTTGCTGTTACAATACAACTCGTTCATT
CGTTCTATTCTTCTTACTGATTGGCTTAGTTGGTGTGGTGTTGGCTGGAG
TTGTGGATTTCTGGTGGAAAAGCGATCTACAAGATAAATACGGTGATGCT
GTTACTGAAGAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009015XLOC_009015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016139-exon-sc0000226-1575043694:218822..219215TCONS_00016139-exon-sc0000226-1575043694:218822..219215Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1575043694:218270..218377TCONS_00016139-exon-sc0000226-1575043694:218270..218377Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1575043694:217789..217929TCONS_00016139-exon-sc0000226-1575043694:217789..217929Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1575043694:216539..217537TCONS_00016139-exon-sc0000226-1575043694:216539..217537Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1510915933:218822..219215TCONS_00016139-exon-sc0000226-1510915933:218822..219215Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1510915933:218270..218377TCONS_00016139-exon-sc0000226-1510915933:218270..218377Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1510915933:217789..217929TCONS_00016139-exon-sc0000226-1510915933:217789..217929Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1510915933:216539..217537TCONS_00016139-exon-sc0000226-1510915933:216539..217537Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1491911889:218822..219215TCONS_00016139-exon-sc0000226-1491911889:218822..219215Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1491911889:218270..218377TCONS_00016139-exon-sc0000226-1491911889:218270..218377Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1491911889:217789..217929TCONS_00016139-exon-sc0000226-1491911889:217789..217929Clytia hemisphaericaexon
TCONS_00016139-exon-sc0000226-1491911889:216539..217537TCONS_00016139-exon-sc0000226-1491911889:216539..217537Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016139-proteinTCONS_00016139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:216539..219215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.324563	0.270204	0.168497	0.0825898	0.167136	0.158605	9.62516	9.30735	4.57733	2.80665	4.71929	3.00767	11.331	11.2659	0.486606	0.539898	22.7126	26.1826	15.3574	16.3041	59.4204	53.7379	21.1201	28.6706	23.0645	18.553	2.4659	2.66039	0.340269	0.262289
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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