|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016138 ID=TCONS_00016138|Name=TCONS_00016138|organism=Clytia hemisphaerica|type=transcript|length=4573bpRun BLAST on NCBI transcript from alignment at sc0000226:167391..204313- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016138 ID=TCONS_00016138|Name=TCONS_00016138|organism=Clytia hemisphaerica|type=transcript|length=36923bp|location=Sequence derived from alignment at sc0000226:167391..204313- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016138 vs. Swiss-Prot (Human)
Match: IF4G3 (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2) HSP 1 Score: 387.882 bits (995), Expect = 6.028e-111 Identity = 294/746 (39.41%), Postives = 420/746 (56.30%), Query Frame = 3
Query: 2457 EEKLQYDRDFLLKFQFNPICTSKPANLPNI-DIVLDTAHQPTKP---LVPGQRFTNNDFMP---NFMRQXXXXXXXXXXXXXXXXXXXPPSMGGKPQKIIQLPQFEKLELKRSENAWVRPS---DQDKDLPEELKVMKELERNVRAILNKLTPQKFKELVDKMTNLKIDSVSKLQMAIDLIFEKAISEPGFSVAYANMCRVLTDAFKSVPGDKSNT-NFRKILLNKCQKEFEKEKQDD--IQMEQDRSKTFDTEKEMKEWKEELDYKEMINRRRTLGNIRFIGELFKLKMISEKIMHECILKLIRVSKPDSMEDHLECLCKLLSTVGKQLDHEEAKPRMDQYFQQXXXXXXXXXXXXXXXFALKDVIDLRANHWVPRRDEGNPKTIDQIARXXXXXXXXXXMYRQQEKLKPREPRGRVGGRDSPSVRNPTSADGWTNVP-SKATRGFGPTVDASKF-KIQKKNDSSDISLGPGGRPXXXXXXXXXXXXXXXXXXXNTPTNEIEQKGNRFDLL-----SGSS-DTPAPLDNRR-------------------GGSRPNSGMRKTSQ----GTGRRGDERNAALRAVRDLTSGSNSRNQSPSRAGDSAINSPVSGSQTPVEASLSPTSPPAVDEDKMRKKTKSTIEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKPQNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAYMGEILGPMIAEPSV 4562
E K QYDR+FLL FQF P C KP LP I D+VLD +QP P L P DF P +F RQ+ GGR + P +P+KII + E + LK++ENAW +PS D D PE +K +EL R VR+ILNKLTPQ F +L+ +++ L +D+ +L+ IDL+FEKAI EP FSVAYANMCR L + NT NFRK+LLN+CQKEFEK+K DD + +Q + +E +EL+ + RRR++GNI+FIGELFKLKM++E IMH+C++KL++ + E+ LECLC+LL+T+GK LD E+AKPRMDQYF Q+EKI++++K SSRI+F L+DVIDLR +WV RR + PKTI+QI +EA+ + +EE+ R+ ++L +E R P V+ GW V +K +R +D SKF KI K I L P + G+W KG+SGG+ + + + + NRF L SGS+ TP D+RR +RPN+ MR S + ++R L V+ LT G + R A + S P +++S A+ E+++ +K+KS I+EF + D+KEAM C++EL+A L FV + E R + G+L ++V+ + +F KG S +E+A DMA+DIP + Y+ E++ PM+ E +
Sbjct: 619 EGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQTPGGRGVPLLNVGSRRSQ--PGQRREPRKIITVSVKEDVHLKKAENAW-KPSQKRDSQADDPENIKT-QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLK----NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQ--RKVQQLMTKEKR-------RPGVQR-VDEGGWNTVQGAKNSR----VLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSL----NRFSALQPPAPSGSTPSTPVEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGVDVE-----RNSTEAERNKTRESAKPEISAMSAHDKAALSEEELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGI 1333 The following BLAST results are available for this feature:
BLAST of TCONS_00016138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.