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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016128 ID=TCONS_00016128|Name=TCONS_00016128|organism=Clytia hemisphaerica|type=transcript|length=4273bpRun BLAST on NCBI protein sequence of TCONS_00016128-protein >TCONS_00016128-protein ID=TCONS_00016128-protein|Name=TCONS_00016128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1398bp MQDKPIRGSYQPRPQYVSDSNQMMQAGTAPVRGGLYNFPNNTMQIRGGYSRun BLAST on NCBI transcript from alignment at sc0000226:164568..203464- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016128 ID=TCONS_00016128|Name=TCONS_00016128|organism=Clytia hemisphaerica|type=transcript|length=38897bp|location=Sequence derived from alignment at sc0000226:164568..203464- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000226:164568..203464- >TCONS_00016128 ID=TCONS_00016128|Name=TCONS_00016128|organism=Clytia hemisphaerica|type=CDS|length=96462bp|location=Sequence derived from alignment at sc0000226:164568..203464- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016128 vs. Swiss-Prot (Human)
Match: IF4G3 (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2) HSP 1 Score: 445.662 bits (1145), Expect = 6.712e-131 Identity = 341/938 (36.35%), Postives = 522/938 (55.65%), Query Frame = 3
Query: 1608 EEKLQYDRDFLLKFQFNPICTSKPANLPNI-DIVLDTAHQPTKP---LVPGQRFTNNDFMP---NFMRQXXXXXXXXXXXXXXXXXXXPPSMGGKPQKIIQLPQFEKLELKRSENAWVRPS---DQDKDLPEELKVMKELERNVRAILNKLTPQKFKELVDKMTNLKIDSVSKLQMAIDLIFEKAISEPGFSVAYANMCRVLTDAFKSVPGDKSNT-NFRKILLNKCQKEFEKEKQDD--IQMEQDRSKTFDTEKEMKEWKEELDYKEMINRRRTLGNIRFIGELFKLKMISEKIMHECILKLIRVSKPDSMEDHLECLCKLLSTVGKQLDHEEAKPRMDQYFQQXXXXXXXXXXXXXXXFALKDVIDLRANHWVPRRDEGNPKTIDQIARXXXXXXXXXXMYRQQEKLKPREPRGRVGGRDSPSVRNPTSADGWTNVP-SKATRGFGPTVDASKF-KIQKKNDSSDISLGPGGRPXXXXXXXXXXXXXXXXXXXNTPTNEIEQKGNRFDLL-----SGSS-DTPAPLDNRR-------------------GGSRPNSGMRKTSQ----GTGRRGDERNAALRAVRDLTSGSNSRNQSPSRAGDSAINSPVSGSQTPVEASLSPTSPPAVDEDKMRKKTKSTIEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKPQNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAYMGEILGPMIAEPSVLPLQEMKKLLEPLVYNSKAGVILAEALNTGCKEIADEQTIAGIWKXXXXXXXXXXXXXRNIDEFVQDHKLQYL------MKXXXXXXXXHASQIQQEL-LLMLNTKNNEDKVIAFIDEKIPSKERATPEFICTLTDAVCRSSLTDEGSECKCNKEALSGKKRILLKYIDGNKISELHAAFALQSLATDLNHP 4268
E K QYDR+FLL FQF P C KP LP I D+VLD +QP P L P DF P +F RQ+ GGR + P +P+KII + E + LK++ENAW +PS D D PE +K +EL R VR+ILNKLTPQ F +L+ +++ L +D+ +L+ IDL+FEKAI EP FSVAYANMCR L + NT NFRK+LLN+CQKEFEK+K DD + +Q + +E +EL+ + RRR++GNI+FIGELFKLKM++E IMH+C++KL++ + E+ LECLC+LL+T+GK LD E+AKPRMDQYF Q+EKI++++K SSRI+F L+DVIDLR +WV RR + PKTI+QI +EA+ + +EE+ R+ ++L +E R P V+ GW V +K +R +D SKF KI K I L P + G+W KG+SGG+ + + + + NRF L SGS+ TP D+RR +RPN+ MR S + ++R L V+ LT G + R A + S P +++S A+ E+++ +K+KS I+EF + D+KEAM C++EL+A L FV + E R + G+L ++V+ + +F KG S +E+A DMA+DIP + Y+ E++ PM+ E + + + +PL+ +AGV+L+E L+ CK+++ ++ + +W+E+ LSW L G ++ F+ + KL ++ + S A ++ + L L++ K N++++ +++ + + ++P F+ L AVC++++ + S + + + + ILLKY+D + EL A +ALQ+ L+ P
Sbjct: 619 EGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQTPGGRGVPLLNVGSRRSQ--PGQRREPRKIITVSVKEDVHLKKAENAW-KPSQKRDSQADDPENIKT-QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLK----NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQ--RKVQQLMTKEKR-------RPGVQR-VDEGGWNTVQGAKNSR----VLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSL----NRFSALQPPAPSGSTPSTPVEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGVDVE-----RNSTEAERNKTRESAKPEISAMSAHDKAALSEEELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELTIEFSKPLLPVGRAGVLLSEILHLLCKQMSHKK-VGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSPCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDEIQMSSPTFLRALMTAVCKAAIIADSSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQP 1524 The following BLAST results are available for this feature:
BLAST of TCONS_00016128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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