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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016100 ID=TCONS_00016100|Name=TCONS_00016100|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GTGAAAAATGAATTTCTCATCAATTTTAGTTATTCCTACGTTTTTGACAA
TAGTGTCATATGTAGTCGCATTTAAATGCAAAAGGAAgGTCCCTGACAAT
CACCATGGAGCTCCGTCCCACACTGTCATCAAGGAAGAACAACCAGTAAC
ATCAGGTGATCTAAAACTTAGTTTACCAGTTTTATCTGCTGAGTGGAacg
tcaaaatcaaatttttaatcACTGGCTTCCCAGTCCCACATTCCAAATAT
TGTGCCATCTTTAGAATGTCGAATGGTGACGTTTACGGTACACGCACACC
ATCCATCTCTGTCAACACTGAAACTTCAAACCTAATCATTGCTTCTGCAG
TTAATGGCAACGCTAACAGATACAAGTTAACATCATTTCAAACCAATACA
TGGTATGATGTCGAAGTCGACCAATCCTACAAAGGGAATGGAATATACCA
ATATTCCATCATCGTTAATGGTGATCAGATTGCATCGGAAGTGAACACAC
AAGCTATTCAATTTTACAACGTTGGTGTTTATGCAGGGCATCCATTTCCA
TCTCAATTATCCTGCACGGGGGTTATAAGTTATCTGAAAGTTACAAACTT
TTTGTaaaattaatcttaaaatctaaATAACTGTTAAAAAATTTGCATCA
TCCAAGCCTAGTAACGGAGGGAGGACATGAGGACGGCTTCAAACTGTACC
GTACCCCAATCTCGAAACGTAACCCTTACTAACCCTAATCCTCAAATCTT
GACAGAATAGAGAGTTTCTGTAGTCATAAAGGCAACTGCAACGGCAACGT
GAAAACATTAAGATTAAATTCACACCTTTAAGCTGTCAAAAATCTGAGTA
AACCCAAATTAGCCGTTTTCTCTTCTGGTGCCCGACGgcaaatcactcat
ttttgacGTTGTCAGACAACGTGATATTTCTACATAAAAATCAACGTCAA
ACAAAAAGTAAgacagttttgaaaaaagatatttcagAATCTTTTAAGCT
AACAATTAGCTTTTTTTCTTGTACAAGATGTGTAAGTTTCAc Run BLAST on NCBI protein sequence of TCONS_00016100-protein >TCONS_00016100-protein ID=TCONS_00016100-protein|Name=TCONS_00016100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MNFSSILVIPTFLTIVSYVVAFKCKRKVPDNHHGAPSHTVIKEEQPVTSG
DLKLSLPVLSAEWNVKIKFLITGFPVPHSKYCAIFRMSNGDVYGTRTPSI
SVNTETSNLIIASAVNGNANRYKLTSFQTNTWYDVEVDQSYKGNGIYQYS
IIVNGDQIASEVNTQAIQFYNVGVYAGHPFPSQLSCTGVISYLKVTNFL Run BLAST on NCBI transcript from alignment at sc0000226:283073..289436+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016100 ID=TCONS_00016100|Name=TCONS_00016100|organism=Clytia hemisphaerica|type=transcript|length=6364bp|location=Sequence derived from alignment at sc0000226:283073..289436+ (Clytia hemisphaerica)
GTGAAAAATGAATTTCTCATCAATTTTAGTTATTCCTACGTTTTTGACAA
TAGTGTCATATGTAGTCGCATTTAAATGCAAAAGGAAggttagttttttt
cacttttcatacAAATTTCTTTCCAATTGAATTCGTATCGCTAGCTGTAA
GTGTTTGACAGGGTAAGCTAGAGAGTCAGAGGGCTAGGACCTTTTTCCTA
GCAGAGCCCTCTTGATAAAGGGCGGAGCTTTTGATAAAGGGCGGAGAAAA
ATAAAGGGCGCCGAAAAGGCTTTTGAGATGTCCCTCGTAAaaggttttta
ttttctaattcaTAAACACATACGAAAACTTTATTTATCATTCAATCGAT
ATATTTCTCTCACTCAGCTAGAGAACATACAAGAAGCGTAAATATATAGT
CCgtatatacacgtttttataagaacatacaaaattctttaagccttcgg
atgttcttaacttttcgagttttaagcgtaaaaatgttattaaaatgttc
ttaattttgccattttttgagtctttttgccaattttcctgagaaattgg
ctgttttcgagtccgcgaagtcttaaaatgttcttaacttgttcttaata
gtttggccatcgaagtcttatgttcttatataatttgttcttataaaaaa
acgtgtagtatccAATCTCGTACACAGATCCACAtacaccactttttgat
tttactgatggacgtgatacaatCAACCTTCATAagtgctatcagaatca
taaaaaaacgaGCTAAGGGCCTGGTTCGAGCTTTGTATAATATACACTAT
GAAACTAATGTACAGCACCTTATTACATGTAACCACCATATCTTTGTATA
CTGTGGGGTGCTCAGGCGAACATTCAACACcctaaaatataaatttcact
CATTAATTTAGGTCCCTGACAATCACCATGGAGCTCCGTCCCACACTGTC
ATCAAGGAAGGTACAAGTTCTTCAACTATTCATGGTTTCTCAAAACTATT
TGATTATTATCTGATAAAGTGGATTCAAATGGAaacattaaagggacata
aaagtattgACGAAGTTTGttaacaaaccgtatgcagctaacctgagatc
agattgtgaatgttttcagCACACTaagtacgctgaagctctaaaagggg
ggggggcgtacagTATTTcagaattgcggaaatcgacccttttttcttcg
gaatttcggaaatcaggcaGAATTCTTTCGGTATTTTGGAATTCTGAagt
tgtttcggtatcggaaatccattaacttttgcttcgaaattccggtatta
taaagtttttatcccactttttaaaaaaaaaatcaaatttgatgaataat
tagtcaaaacgaggaaaaatactccaaaaaatcggtatcgaaattgcaag
tatttttttacggaatttcggaaatttagGCAAAAtcattcggtatttcg
gaaattgcAAAACCTCGTACGCCCCTCCCTCTAAAtggatgtgtgaaaac
ataatAATCTGACGAacatgcaatctcgaaatcgtaaggaccgcgttcgt
ctaaaaggactaggaacgacAATAAAGTTGCGTggttgtgtttatgaata
gggcgccgtatcagtttttaactttccggTGCACTaaaagattcttgttg
tagaattttccgcgaaaggactattttcctcagatatataattttcaatc
gccttcagaggtttaccgtgcgcgtaagaaaattacaaACATCTGTTCAG
GTTATATGCAGCaggataaaaaatcaaaacaaatgtcacatgtcaaaata
ataaatcaaaaaatgaatatataaacgactggacatcaggttatatgcag
cgggatacaaaatcaaaacaaatgtcacatgtcaaaataataaatcaaaa
aatgaacatataaacgactggacatccatctcctttgtatttttgaagat
aactcTGCTAGCTttgttgccgcctcgttaaaatcatcaaatgaaacaat
aaattttgatggtatacctcttgggaataccttgctaacaacgtcaaaac
ttcgacaaaagtctctgttgttctacctcaggcaaattaaggcacgtcca
aatttatcttaattttttatcaaagtttccacttgtcatagcatatcact
tcatacatcgaaagaagcgtattggagtgtagatcactggaatagctgtg
ccatgattaatttttttacccaaaaaagatattagacaaaaaccaaaaaa
tgctgacgtcatcaaaacttgttttttgaataacttcagtttggcttatg
gtataaacatgaaatttggacaaaagttgcatatcaacaataggaacatt
tttgcataattttttttgcaaattttgccgacgtcagcagaaatcagcaa
aatacgaaatttttcaattaagtgctgacgtcagcaaaatttcaaaattt
ttttttcaaaatgatccttttaatggtgtgcaactttggtccaaatttca
tgtttttaccataagccaaattggagttattcaaaaaacaagttttgctg
acgtcagcattttttggtttttgcctaatatttttttttgggtgaaaaaa
ttaattatggcactGCAATTCCAGTGATTTACActccaatacgcttcttt
cgatatatgaagtgatatgctatgataagtggaaacggtgataaaaaatt
gaggtaagtttgaaaaatctggacaggccttaattgggaggtcgtcagta
gtccgaccctttctagtccgacagtaaaaatgtccaaCGTTgggtttgac
gaatgcgtcagtattccgacaacaattttgtccgacaacgagtcaaaaaa
atcatataaaaaacGTAATATGAATCGcgaggcacatcttttataaaaat
ccaaagttccgattttgaggttaggcccctaaacccgacttttcttaaat
tttgggaagcttgttaggattaggctttcaagagtcaagaaataggattt
agctgtttttacgacccttctttaGTGATTGACCCTGTGACCCTGATTgt
tcctttatttctaattatatCAAAATTCCGCCAAAATGagcttttattaa
tattatctcagtgaaaaacccttattcaacattcgacactctaaaatctt
tcgttttcggacaaaagtgacgtcggaaaaaaagacttccaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgacgtcg
gaaaaaaagacttccaaattttaaatttattttatagattcggactattt
tactgtcggactagaaagtgtcggactagtgacatgcacccccttaattt
gcctgagacttttctcaagtcttttatctatatcatgaCAAAGACAACAG
AGGCAAAAttatcgtcagcttgtcaaaattcCGAATTTGGACTCAAAAgt
ataaaataattttacagAGTATGGGCAACTGGCAGACTATTTTTTCATAt
gtcataaaaaatttttttggagtGACAAAAGTAATTCAAAAGTaaacacg
cagttgaaattctacATTTCTgcgttgaaaaatgttgataaaatatgttg
caaacttatgaaaaaatgtagaataattattttttatttacctaagtaat
tcaaagaaatgaaattgTGACGGAATGTTGgcggattttttataccaatt
ttgatatacaggcggcaacgaagctcgcttcaaagacacattggaagata
gacgtccagtcgtttatatgttcatgataaaaataaatatggctgatttc
aattgtttcaattgtttcacACGAGTTTGTTtaggacacgtgattttaat
tgtacTCTTTAGagtgacacgtggttcgcgcaatgtttacattttacagg
gtgtccggaaaaaaagtatcgaatCGTACCACTACTTCTATAGggagaaa
gttcttgtgtgtgtttcattaaatttgcaatgtttatcaaagtttctctc
tatCTTAACTTTTTCTCCTTGTCAGTACACAAAGTTCCAAACATTAAACA
TGACTACTTTCTCTTGGAGACAATTGGATTATCTTTGTAACGCGCCCGTA
CTGTACAATGAGTACTTAATTACAAAATTATACGTTTTACAATCGATAAG
TCTTTCGTTACGTCTATGAATCATTCAATCTGTTGAACAATTTCAAGACT
TGTTGCGTTTGAATTCTTCGATATCTCTTCCGTTTCTCGGATTTCATAAC
TAAACGTAACCTAAGGGACTCCGCGATCTAATGAGCCCCTTCCCTGGACT
AAAAACCTACTTCCCTCGAGGCTACAGGGGTCAGTCTGGTTCGCCAATCT
GACTGATCTTTTGGTAGGATAAAAAGCCTTGGTTcgttaataaaataata
aatctgTTATTGTCTTCTTCTGTTCCGTTTTGCTCTCCTCCATCGCTTGA
TAGGTTATTCGGTCCCTATATTGTCAGCAATCGCCGTATGTTCATGAAAA
GAAATGTAATCGATTAATAAAGTTTAAGTACACGACCATATGTGCAAATG
AGATGTCAAGTCTACTCCGTTCCTCCCTTTTATAGCGCATGCTCAGGAAT
TCGCATGCCGGTACTTTCGTCCAAAATCGTATAAGATATTCAGATTTCcg
gatattttttcaaaatatagcgGAAATCGCACATGTCATGTTATGAGACT
TTATTTATGaatcactttaaaaaaaacaattctgaataactttaacgtca
tgagaattgtaaagaaagttaattgtttttaattataatgactgttgtaa
aacaATTGTTGTGTTGAtgtatattttcttacattttgttaaaccacacg
caacaaccttctactcagaatcacgttccaactcgatactttttttcgga
caccctgtactacttttatgtccctttaagtttATTTTGTACATTcgctt
aaagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcg
gatacaaaatcgaaacaaatgtcacatgtcaaaatagaaaatcaaaccaa
atatggcaaattttgattgttcaattgttttacaagtttgttttggacac
gtgattttaattgttctctttaatgacacgcggttcgcgcaatgtttaca
ttttactactttaatgtccctttaaagcgaatggactttTTATGTCgttg
gatttctagaaaatttttgaggacttcaattcaattcatgatattcataa
cGTTATGTTTTATACGGAGGCACCGAAAATAGCCCGGACGTTTGCCacta
gtttagtttttttaacatTCAAATCTAGTGGCAAACATCCAGTCTTTTCC
CGTATAAAATATTATGTCATGAATACCATGAATTCATTTGTATTTGTTTT
ACTTCTTAGAACAACCAGTAACATCAGGTGATCTAAAACTTAGTTTACCA
GTTTTATCTGCTGAGTGGAacgtcaaaatcaaatttttaatcACTGGCTT
CCCAGTCCCACATTCCAAATATTGTGCCATCTTTAGAATGTCGAATGGTG
ACGTTTACGGTACACGCACACCATCCATCTCTGTCAACACTGAAACTTCA
AACCTAATCATTGCTTCTGCAGTTAATGGCAACGCTAACAGATACAAGTT
AACATCATTTCAAACCAATACATGGTATGATGTCGAAGTCGACCAATCCT
ACAAAGGGAATGGAATATACCAATATTCCATCATCGTTAATGGTGATCAG
ATTGCATCGGAAGTGAACACACAAGCTATTCAATTTTACAACGTTGGTGT
TTATGCAGGGCATCCATTTCCATCTCAATTATCCTGCACGGGGGTTATAA
GTTATCTGAAAGTTACAAACTTTTTGTaaaattaatcttaaaatctaaAT
AACTGTTAAAAAATTTGCATCATCCAAGCCTAGTAACGGAGGGAGGACAT
GAGGACGGCTTCAAACTGTACCGTACCCCAATCTCGAAACGTAACCCTTA
CTAACCCTAATCCTCAAATCTTGACAGAATAGAGAGTTTCTGTAGTCATA
AAGGCAACTGCAACGGCAACGTGAAAACATTAAGATTAAATTCACACCTT
TAAGCTGTCAAAAATCTGAGTAAACCCAAATTAGCCGTTTTCTCTTCTGG
TGCCCGACGgcaaatcactcatttttgacGTTGTCAGACAACGTGATATT
TCTACATAAAAATCAACGTCAAACAAAAAGTAAgacagttttgaaaaaag
atatttcagAATCTTTTAAGCTAACAATTAGCTTTTTTTCTTGTACAAGA
TGTGTAAGTTTCAc Coding sequence (CDS) from alignment at sc0000226:283073..289436+ >TCONS_00016100 ID=TCONS_00016100|Name=TCONS_00016100|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000226:283073..289436+ (Clytia hemisphaerica)
ATGAATTTCTCATCAATTTTAGTTATTCCTACGTTTTTGACAATAGTGTC
ATATGTAGTCGCATTTAAATGCAAAAGGAAgGTCCCTGACAATCACCATG
GAGCTCCGTCCCACACTGTCATCAAGGAAGAACAACCAGTAACATCAGGT
GATCTAAAACTTAGTTTACCAGTTTTATCTGCTGAGTGGAacgtcaaaat
caaatttttaatcACTGGCTTCCCAGTCCCACATTCCAAATATTGTGCCA
TCTTTAGAATGTCGAATGGTGACGTTTACGGTACACGCACACCATCCATC
TCTGTCAACACTGAAACTTCAAACCTAATCATTGCTTCTGCAGTTAATGG
CAACGCTAACAGATACAAGTTAACATCATTTCAAACCAATACATGGTATG
ATGTCGAAGTCGACCAATCCTACAAAGGGAATGGAATATACCAATATTCC
ATCATCGTTAATGGTGATCAGATTGCATCGGAAGTGAACACACAAGCTAT
TCAATTTTACAACGTTGGTGTTTATGCAGGGCATCCATTTCCATCTCAAT
TATCCTGCACGGGGGTTATAAGTTATCTGAAAGTTACAAACTTTTTGTaa
ATGAATTTCTCATCAATTTTAGTTATTCCTACGTTTTTGACAATAGTGTC
ATATGTAGTCGCATTTAAATGCAAAAGGAAgGTCCCTGACAATCACCATG
GAGCTCCGTCCCACACTGTCATCAAGGAAGAACAACCAGTAACATCAGGT
GATCTAAAACTTAGTTTACCAGTTTTATCTGCTGAGTGGAacgtcaaaat
caaatttttaatcACTGGCTTCCCAGTCCCACATTCCAAATATTGTGCCA
TCTTTAGAATGTCGAATGGTGACGTTTACGGTACACGCACACCATCCATC
TCTGTCAACACTGAAACTTCAAACCTAATCATTGCTTCTGCAGTTAATGG
CAACGCTAACAGATACAAGTTAACATCATTTCAAACCAATACATGGTATG
ATGTCGAAGTCGACCAATCCTACAAAGGGAATGGAATATACCAATATTCC
ATCATCGTTAATGGTGATCAGATTGCATCGGAAGTGAACACACAAGCTAT
TCAATTTTACAACGTTGGTGTTTATGCAGGGCATCCATTTCCATCTCAAT
TATCCTGCACGGGGGTTATAAGTTATCTGAAAGTTACAAACTTTTTGTaa
ATGAATTTCTCATCAATTTTAGTTATTCCTACGTTTTTGACAATAGTGTC
ATATGTAGTCGCATTTAAATGCAAAAGGAAgGTCCCTGACAATCACCATG
GAGCTCCGTCCCACACTGTCATCAAGGAAGAACAACCAGTAACATCAGGT
GATCTAAAACTTAGTTTACCAGTTTTATCTGCTGAGTGGAacgtcaaaat
caaatttttaatcACTGGCTTCCCAGTCCCACATTCCAAATATTGTGCCA
TCTTTAGAATGTCGAATGGTGACGTTTACGGTACACGCACACCATCCATC
TCTGTCAACACTGAAACTTCAAACCTAATCATTGCTTCTGCAGTTAATGG
CAACGCTAACAGATACAAGTTAACATCATTTCAAACCAATACATGGTATG
ATGTCGAAGTCGACCAATCCTACAAAGGGAATGGAATATACCAATATTCC
ATCATCGTTAATGGTGATCAGATTGCATCGGAAGTGAACACACAAGCTAT
TCAATTTTACAACGTTGGTGTTTATGCAGGGCATCCATTTCCATCTCAAT
TATCCTGCACGGGGGTTATAAGTTATCTGAAAGTTACAAACTTTTTGTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016100-exon-sc0000226-1491911889:283073..283160 | TCONS_00016100-exon-sc0000226-1491911889:283073..283160 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1510915933:283073..283160 | TCONS_00016100-exon-sc0000226-1510915933:283073..283160 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1575043694:283073..283160 | TCONS_00016100-exon-sc0000226-1575043694:283073..283160 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1491911889:283984..284032 | TCONS_00016100-exon-sc0000226-1491911889:283984..284032 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1510915933:283984..284032 | TCONS_00016100-exon-sc0000226-1510915933:283984..284032 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1575043694:283984..284032 | TCONS_00016100-exon-sc0000226-1575043694:283984..284032 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1491911889:288532..289436 | TCONS_00016100-exon-sc0000226-1491911889:288532..289436 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1510915933:288532..289436 | TCONS_00016100-exon-sc0000226-1510915933:288532..289436 | Clytia hemisphaerica | exon |
| TCONS_00016100-exon-sc0000226-1575043694:288532..289436 | TCONS_00016100-exon-sc0000226-1575043694:288532..289436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:283073..289436 + |
Blast
The following BLAST results are available for this feature:
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