TCONS_00016094 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016094
Unique Name	TCONS_00016094
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	930

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000226:209369..212702+
coding sequence from alignment at sc0000226:209369..212702+

transcript sequence

>TCONS_00016094 ID=TCONS_00016094|Name=TCONS_00016094|organism=Clytia hemisphaerica|type=transcript|length=930bp
ttaacagtcaaaaatacagaaaaaatttttaatgaaaaaacttcaaaatt
ataTAAGCGGAAAGGTTTCTCTTCAAAAAGAGCGACTTGATAGAACATCA
GATGATAATTTAGGACAGCAAGAAACTTTAACGGAGGACTCATCAGCCGA
GATGTTCTCTAAAAGTTATTGGTTTGGAGGTAATGAAGGAGAAACACCAG
AAGAACCAGCTCCTGACCCATGGCTTCCAAATATGAGTAAAACTCAACGT
ATTGTTGGTTTCTTTACAATGCTTTCGCTTGGCATCTTTTGTTTTGTATT
GGCTGGTTTTTATGCACCGCTTATTATTTTAAAAGCAAggaaatttgttc
ttttatatACCATGGGAAGTCTGTTCACTATCGGGAGTTTTGCAGTGTTA
TGGGGCCCTTACAACCACATGAAGCACATCTTTTCATACCAACGTTTACC
ATTTACTGCTGCTTACTTTGGAACAATGATTGGTACTCTCTATTCTGCAT
TATGGtGGAGAAGTACAGTATTTACAATTATATTTGCTGCTCTTCAAATT
ACAGCATTATTATGgtaCATATTTAGTTATATACCAGGTGGAACTACTGG
GTTGAAATTCTTCTCAAAACTTTTTGCATCAGCATGTACAAAAACTGTGG
GAAGGACATTACCTATATGAGATGGTTTgtagaaaattgtttttattgga
gGTGTTGGGGGATGGTGTATGGATTTTACTGTTGGTGTAAATTTGAAATG
AAGGTGGGATAAATTGTTGAATGATATATTTAAAAGATATCAAGAATCAA
TGGGATGACTTAGAGGATAATGATTTATGGTAATGATTTAAAAcatagat
agagctactctgtatttcccaagcattagcaggtgaagcaaaataattcg
CCATCTTTGCTAAAAGTAGTTCACAATAGG

Run BLAST on NCBI

protein sequence of TCONS_00016094-protein

>TCONS_00016094-protein ID=TCONS_00016094-protein|Name=TCONS_00016094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MKKLQNYISGKVSLQKERLDRTSDDNLGQQETLTEDSSAEMFSKSYWFGG
NEGETPEEPAPDPWLPNMSKTQRIVGFFTMLSLGIFCFVLAGFYAPLIIL
KARKFVLLYTMGSLFTIGSFAVLWGPYNHMKHIFSYQRLPFTAAYFGTMI
GTLYSALWWRSTVFTIIFAALQITALLWYIFSYIPGGTTGLKFFSKLFAS
ACTKTVGRTLPI

Run BLAST on NCBI

transcript from alignment at sc0000226:209369..212702+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016094 ID=TCONS_00016094|Name=TCONS_00016094|organism=Clytia hemisphaerica|type=transcript|length=3334bp|location=Sequence derived from alignment at sc0000226:209369..212702+ (Clytia hemisphaerica)
ttaacagtcaaaaatacagaaaaaatttttaatgaaaaaacttcaaaatt
ataTAAGCGGAAAGGTTTCTCTTCAAAAAGAGCGACTTGATAGAACATCA
GATGATAATTTAGGACAGCAAGAAACTTTAACGGAGGACTCATCAGCCGA
GATGTTCTCTAAAAGTTATTGGTTTGGAGGTAATGAAGGAGAAACACCAG
AAGAACCAGCTCCTGACCCATGGCTTCCAAATATGGtatgttttcttctt
ttgtttctaTGATTGAGTTAATTGTTTGTAATTAGACACAGTCACAGTTT
GTTGGTCGAATTACTAAATCCTGGTTTTAGAATTGAATTTACTTACACAA
TAACTGGTGAATGAAGAACAAACATGTGTTTTCTGTTTTTTCATTTGACG
TATCATTTTTTTCGTTCTAGAGTAAAACTCAACGTATTGTTGGTTTCTTT
ACAATGCTTTCGCTTGGCATCTTTTGTTTTGTATTGGTATGTCATAAAAT
TTAGACGTCTTTCTCTAATAAGCATTGAAATGGGCTTCTGAGAGAACCTT
TGCTTTCTGAAAATCTTCCCTACCCTAATACTTACCCTTCACTTTATAAA
CATTAACGGGGAATGGATCAATGTTTTGTTATCAAAGATTATTATTTGCT
GCTCTTATTAAGAATTTATACTTGCATCAAACATTCTCTCGATTTTGATT
TATAGGCTGGTTTTTATGCACCGCTTATTATTTTAAAAGCAAggaaattt
gttcttttatatACCATGGGAAGTCTGTTCACTATCGGGAGGTAAATGAA
GCTTTAACCTTTCATTTTTAATCGTTAAGTTTTTGAATTCATTGATTGTA
TTTTATACGCTACTAAAAGGACTGAATTAAACGAAGAAAAGTTGTTGTAA
AAACACACTTCAATTACTATTTTCTTGGTGGTATTTGTTTGGTATAATGT
AAATATGAATATCTTGTGCTTTAGACCAAGTCTAACCCTATCTCTTCATC
ACTAAAAGATGTTGAAAGTTAGGTAACATAGTATAGATCATGTTTGATTT
CAGTTTTGCAGTGTTATGGGGCCCTTACAACCACATGAAGCACATCTTTT
CATACCAACGTTTACCATTTACTGCTGCTTACTTTGGAACAATGATTGGT
ACTCTCTATTCTGCATTATGGgtaagaataaaaaaacaatacacCTGTTA
ACTTTAGTACTAAATGCTGTCAGGAAAGAACATGATTGCAGTTTATGGTC
TAACCatttcaaatatataaagtCACTCCGTTGAGTTGTATACAGATACA
AATATTTGACATCATTCAACTCTGGGTCTAAATCGcttatagagcttctt
aagcgtttttaagctattttagtgaaaattcggtTCTACTTCCTTCGCTG
gtcttcaatggttctaatcctttgcaagggagtgtcccacgaggtttagg
aacattgggaacctcTACAGAGATATTTGACGTCATTCAAATCTCCTTGT
AAATCGAATCGAAAGTAATTGCTTTGCGAATGCATTGAAGCAAGGAGTTA
AGAATGAATAATAGATATAATGATCTATCAGACCAATAGACTGCTGGCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttcaaggtattctagttatgtatatacagtacattttg
ggggtcatattgaatatttctgacattacttctttatgattctacaaaag
ggagtgttgttgttctttcaacaagggcctttaaatgttaaaacaaacaa
agaacttctcttcagctttggcatttcactttttaatactgtgtggcctt
tgtatcttttcaggtacttagcttcaaatacaattctttgaagagattgg
agtgtttctggttgttttcttttacttttgtgttcatatttgtatttttt
gagcttcgaccgaagagctgatggaaaagttttgataaatttacagacca
gatatcttatagaagcaaaagtcaaaaataaatctacagactgtacataa
tgcgcgcatcagatagttttttatcttttttctgttttgtttttctggtc
tgggattcgaatgtaaacattccattgaaaacgttcgaaacgatcgtttt
tgcgcgcacatcaatgtcaatcaaattactcgccaagatttcctttgcga
accggaaagcggttggtagatcattaagcagacctatactacctgtggtt
ttgtagaggtctgcgattcagactatcaGACCAAGGGTTGCAATATTTGT
GTTAGTGCATTATCATTGATAAATGAGTTGCCACTcttcttaaaatttga
aattaagaTTATGCTCACACGTGACGAACCGAACTGTCACGTGCGATCAT
GGTCTAAGATTAGTTTTTTCGATGAATAAACAATGAAATAatgccttttt
tattgtatttcttttttattcagtGGAGAAGTACAGTATTTACAATTATA
TTTGCTGCTCTTCAAATTACAGCATTATTATGGTAAGAACTTCTTCCCTG
ATTCATTGACATTTTTGTAAGCGACAAACATATTCTGATATTCTAAAATT
TCAGAATACATATGTAAGAGAAACAGAAGTAACGGagttatttgatattt
ttttgtctCAATCACTAactttgaatattgaatttcgGATGTGCTTTAAG
AAATTGATGTCATCTAATCAAAGTGTAGGACGTAATAATATGCTCCAGTC
TTATGTTTGTTAGGTAAActaagttttattttattccatctaaaaaaatc
cttttttttcatttttaggtaCATATTTAGTTATATACCAGGTGGAACTA
CTGGGTTGAAATTCTTCTCAAAACTTTTTGCATCAGCATGTACAAAAACT
GTGGGAAGGACATTACCTATATGAGATGGTTTgtagaaaattgtttttat
tggagGTGTTGGGGGATGGTGTATGGATTTTACTGTTGGTGTAAATTTGA
AATGAAGGTGGGATAAATTGTTGAATGATATATTTAAAAGATATCAAGAA
TCAATGGGATGACTTAGAGGATAATGATTTATGGTAATGATTTAAAAcat
agatagagctactctgtatttcccaagcattagcaggtgaagcaaaataa
ttcgCCATCTTTGCTAAAAGTAGTTCACAATAGG

Coding sequence (CDS) from alignment at sc0000226:209369..212702+

>TCONS_00016094 ID=TCONS_00016094|Name=TCONS_00016094|organism=Clytia hemisphaerica|type=CDS|length=3834bp|location=Sequence derived from alignment at sc0000226:209369..212702+ (Clytia hemisphaerica)
atgaaaaaacttcaaaattataTAAGCGGAAAGGTTTCTCTTCAAAAAGA
GCGACTTGATAGAACATCAGATGATAATTTAGGACAGCAAGAAACTTTAA
CGGAGGACTCATCAGCCGAGATGTTCTCTAAAAGTTATTGGTTTGGAGGT
AATGAAGGAGAAACACCAGAAGAACCAGCTCCTGACCCATGGCTTCCAAA
TATGAGTAAAACTCAACGTATTGTTGGTTTCTTTACAATGCTTTCGCTTG
GCATCTTTTGTTTTGTATTGGCTGGTTTTTATGCACCGCTTATTATTTTA
AAAGCAAggaaatttgttcttttatatACCATGGGAAGTCTGTTCACTAT
CGGGAGTTTTGCAGTGTTATGGGGCCCTTACAACCACATGAAGCACATCT
TTTCATACCAACGTTTACCATTTACTGCTGCTTACTTTGGAACAATGATT
GGTACTCTCTATTCTGCATTATGGtGGAGAAGTACAGTATTTACAATTAT
ATTTGCTGCTCTTCAAATTACAGCATTATTATGgtaCATATTTAGTTATA
TACCAGGTGGAACTACTGGGTTGAAATTCTTCTCAAAACTTTTTGCATCA
GCATGTACAAAAACTGTGGGAAGGACATTACCTATATGAatgaaaaaact
tcaaaattataTAAGCGGAAAGGTTTCTCTTCAAAAAGAGCGACTTGATA
GAACATCAGATGATAATTTAGGACAGCAAGAAACTTTAACGGAGGACTCA
TCAGCCGAGATGTTCTCTAAAAGTTATTGGTTTGGAGGTAATGAAGGAGA
AACACCAGAAGAACCAGCTCCTGACCCATGGCTTCCAAATATGAGTAAAA
CTCAACGTATTGTTGGTTTCTTTACAATGCTTTCGCTTGGCATCTTTTGT
TTTGTATTGGCTGGTTTTTATGCACCGCTTATTATTTTAAAAGCAAggaa
atttgttcttttatatACCATGGGAAGTCTGTTCACTATCGGGAGTTTTG
CAGTGTTATGGGGCCCTTACAACCACATGAAGCACATCTTTTCATACCAA
CGTTTACCATTTACTGCTGCTTACTTTGGAACAATGATTGGTACTCTCTA
TTCTGCATTATGGtGGAGAAGTACAGTATTTACAATTATATTTGCTGCTC
TTCAAATTACAGCATTATTATGgtaCATATTTAGTTATATACCAGGTGGA
ACTACTGGGTTGAAATTCTTCTCAAAACTTTTTGCATCAGCATGTACAAA
AACTGTGGGAAGGACATTACCTATATGAatgaaaaaacttcaaaattata
TAAGCGGAAAGGTTTCTCTTCAAAAAGAGCGACTTGATAGAACATCAGAT
GATAATTTAGGACAGCAAGAAACTTTAACGGAGGACTCATCAGCCGAGAT
GTTCTCTAAAAGTTATTGGTTTGGAGGTAATGAAGGAGAAACACCAGAAG
AACCAGCTCCTGACCCATGGCTTCCAAATATGAGTAAAACTCAACGTATT
GTTGGTTTCTTTACAATGCTTTCGCTTGGCATCTTTTGTTTTGTATTGGC
TGGTTTTTATGCACCGCTTATTATTTTAAAAGCAAggaaatttgttcttt
tatatACCATGGGAAGTCTGTTCACTATCGGGAGTTTTGCAGTGTTATGG
GGCCCTTACAACCACATGAAGCACATCTTTTCATACCAACGTTTACCATT
TACTGCTGCTTACTTTGGAACAATGATTGGTACTCTCTATTCTGCATTAT
GGtGGAGAAGTACAGTATTTACAATTATATTTGCTGCTCTTCAAATTACA
GCATTATTATGgtaCATATTTAGTTATATACCAGGTGGAACTACTGGGTT
GAAATTCTTCTCAAAACTTTTTGCATCAGCATGTACAAAAACTGTGGGAA
GGACATTACCTATATGAatgaaaaaacttcaaaattataTAAGCGGAAAG
GTTTCTCTTCAAAAAGAGCGACTTGATAGAACATCAGATGATAATTTAGG
ACAGCAAGAAACTTTAACGGAGGACTCATCAGCCGAGATGTTCTCTAAAA
GTTATTGGTTTGGAGGTAATGAAGGAGAAACACCAGAAGAACCAGCTCCT
GACCCATGGCTTCCAAATATGAGTAAAACTCAACGTATTGTTGGTTTCTT
TACAATGCTTTCGCTTGGCATCTTTTGTTTTGTATTGGCTGGTTTTTATG
CACCGCTTATTATTTTAAAAGCAAggaaatttgttcttttatatACCATG
GGAAGTCTGTTCACTATCGGGAGTTTTGCAGTGTTATGGGGCCCTTACAA
CCACATGAAGCACATCTTTTCATACCAACGTTTACCATTTACTGCTGCTT
ACTTTGGAACAATGATTGGTACTCTCTATTCTGCATTATGGtGGAGAAGT
ACAGTATTTACAATTATATTTGCTGCTCTTCAAATTACAGCATTATTATG
gtaCATATTTAGTTATATACCAGGTGGAACTACTGGGTTGAAATTCTTCT
CAAAACTTTTTGCATCAGCATGTACAAAAACTGTGGGAAGGACATTACCT
ATATGAatgaaaaaacttcaaaattataTAAGCGGAAAGGTTTCTCTTCA
AAAAGAGCGACTTGATAGAACATCAGATGATAATTTAGGACAGCAAGAAA
CTTTAACGGAGGACTCATCAGCCGAGATGTTCTCTAAAAGTTATTGGTTT
GGAGGTAATGAAGGAGAAACACCAGAAGAACCAGCTCCTGACCCATGGCT
TCCAAATATGAGTAAAACTCAACGTATTGTTGGTTTCTTTACAATGCTTT
CGCTTGGCATCTTTTGTTTTGTATTGGCTGGTTTTTATGCACCGCTTATT
ATTTTAAAAGCAAggaaatttgttcttttatatACCATGGGAAGTCTGTT
CACTATCGGGAGTTTTGCAGTGTTATGGGGCCCTTACAACCACATGAAGC
ACATCTTTTCATACCAACGTTTACCATTTACTGCTGCTTACTTTGGAACA
ATGATTGGTACTCTCTATTCTGCATTATGGtGGAGAAGTACAGTATTTAC
AATTATATTTGCTGCTCTTCAAATTACAGCATTATTATGgtaCATATTTA
GTTATATACCAGGTGGAACTACTGGGTTGAAATTCTTCTCAAAACTTTTT
GCATCAGCATGTACAAAAACTGTGGGAAGGACATTACCTATATGAatgaa
aaaacttcaaaattataTAAGCGGAAAGGTTTCTCTTCAAAAAGAGCGAC
TTGATAGAACATCAGATGATAATTTAGGACAGCAAGAAACTTTAACGGAG
GACTCATCAGCCGAGATGTTCTCTAAAAGTTATTGGTTTGGAGGTAATGA
AGGAGAAACACCAGAAGAACCAGCTCCTGACCCATGGCTTCCAAATATGA
GTAAAACTCAACGTATTGTTGGTTTCTTTACAATGCTTTCGCTTGGCATC
TTTTGTTTTGTATTGGCTGGTTTTTATGCACCGCTTATTATTTTAAAAGC
AAggaaatttgttcttttatatACCATGGGAAGTCTGTTCACTATCGGGA
GTTTTGCAGTGTTATGGGGCCCTTACAACCACATGAAGCACATCTTTTCA
TACCAACGTTTACCATTTACTGCTGCTTACTTTGGAACAATGATTGGTAC
TCTCTATTCTGCATTATGGtGGAGAAGTACAGTATTTACAATTATATTTG
CTGCTCTTCAAATTACAGCATTATTATGgtaCATATTTAGTTATATACCA
GGTGGAACTACTGGGTTGAAATTCTTCTCAAAACTTTTTGCATCAGCATG
TACAAAAACTGTGGGAAGGACATTACCTATATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009000	XLOC_009000	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016094-protein	TCONS_00016094-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000226	supercontig	sc0000226:209369..212702 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.2349	40.8343	17.9399	14.826	23.3578	16.8846	23.3439	26.0592	22.5156	19.5173	16.1522	15.9268	10.7667	9.92386	12.1264	13.1034	19.6885	21.3538	8.15995	11.5493	16.1281	14.5499	48.069	42.2142	9.72084	12.6834	24.7621	14.8335	37.3568	36.8921

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007305	Vesicle_transpt_Got1/SFT2

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016094 vs. Swiss-Prot (Human)

BLAST of TCONS_00016094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00016094 (transcript) - C. hemisphaerica