TCONS_00016090 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016090
Unique Name	TCONS_00016090
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	728

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000226:45125..49660+

transcript sequence

>TCONS_00016090 ID=TCONS_00016090|Name=TCONS_00016090|organism=Clytia hemisphaerica|type=transcript|length=728bp
ATTAAATCATTGCCCCCTGCTTACTAAACTACTTGGGAATTTCCCAGAGG
AAAAACTATATGTAATTCAGTgtaattcattttcttttatagTGTCTATG
AACTAAACTAATAAGTAAGAATATACATCTTTGTTAGACCAGTAAATAAT
ATACAATGGCATCTTGGGATAGTGAAGATTTTGATGTTGACACCAACGAA
CCAGCAGTAGTTGGTGTTTCCGATAAATGGGAAGGCGAAGATGAGGATGA
TGATATTGCTGACAGCTGGGATGCTttagatgaagatgaagataaagaaa
aaccaaaaaCTACAACGCagccaaagaaaaagaaaactttggatgaaaag
ataaaagaaagagaagaaaaacgtAGACTGGAAAAATTAGCCAGAGAAGA
GGAGCGGAAACGTGAAGAAGAAGCAAATAGAGAATTAACACCAGAAGAAC
AAATGGCTGAAAAACTAAGGCAACAAAGgCTGCAAGAAGAATCAGATTTA
GAATTAGCAAAGGAAGCGTTTGGAACCACAGAAGACATGCCAGGGGTTAA
AACGATAGATAAATTTGTACCTGATAATAGGGAAGAATTTAATGAACTAT
CACAAATGCTTGTCACAAAATTACAAGATCTAGAGAATAAATCGGAATAT
CCAGGATTTTTGGAAACACTATTTCGAGATTGTTGTGCATCGGTTGAAGC
AGAAACTATAAAAAAGATCGCTTCAANA

Run BLAST on NCBI

transcript from alignment at sc0000226:45125..49660+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016090 ID=TCONS_00016090|Name=TCONS_00016090|organism=Clytia hemisphaerica|type=transcript|length=4536bp|location=Sequence derived from alignment at sc0000226:45125..49660+ (Clytia hemisphaerica)
ATTAAATCATTGCCCCCTGCTTACTAAACTACTTGGGAATTTCCCAGAGG
AAAAACTATATGTAATTCAGTgtaattcattttcttttatagTGTCTATG
AACTAAACTAATAAGTAAGAATATACATCTTTGTTAGACCAGTAAATAAT
ATACAATGGCATCTTGGGGTAAGTATATATTAATACAAGTATATGAAAGT
TCTCTCAGAAGATCAAGGTTTGTTACCTTGGTCCTATAAATTCAGGATAA
TCTTAAAGCCAACTAAATATGAGTTGAACTGGGCTAAATTCTCAAagaga
taatcagatggttcGAGATCGTTTGCCTGTACATTCCTTTCATAGTCCTG
AGCCAAACTTacaaatctttttgtttagggTTTCACAAAAGTTTAGATAT
tgcaatttgaaatataaaataagTTCATACAGCAGGATTGTTACTTCAAA
CTTCTAGAATCGTGTATACAACTTGAATATATGTCAACTTGGAAAAATGA
TTCATAGATAAAAgatttggaattttttctcAGGAACATTGATGAAATCT
TCATGCGCATTTCTCAAACTGTCTGATTATTATGATAGATTCTCCCAACT
TGATTCAATCAGGGCTGCTCTCTGGGCATAGGTTGGTGCTATAAAATGAT
GTATGGGTGTAGGAGATACCAAGTTGCACTAACGTCTAGTTTTTGAAAGG
TAACACCTTCCTTTGGAACTGTCCTTGATGATCAAAGTAATCACATTTCA
CACATTCTTTTAAATATAGATAGTGAAGATTTTGATGTTGACACCAACGA
ACCAGCAGTAGTTGGTGTTTCCGATAAATGGGAAGGCGAAGATGAGGATG
ATGATATTGCTGTAAGGAAGTGATGTATATCAATGTTATATTAGTGACTG
TTTTTAGAGAcgttctgtccaactatcttctttcaggagatttgagtggc
agagcagcatatgcatttcgcaATAATGATTTCTgcccttaagtggataa
attttggctgggattaaatttggcgaatttggcgaatttggccaaaattc
gccaaattaaatcctcgccaaaatttccaaattcggcaattcgccaaatt
aaatccccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNatccccgccaaatttaacaaaaataga
attatgtgaaaaatcacaactttttagtacatttttgagtaattttcacc
catttcagtgtgacaaaatttcccattcgccaaattaaatcctcgccaaa
ttttacgaaattgatctatcgccaaattaaatccccgccaaaaatcgtat
tttggccaatcgccaaattaaatccacgccaaaatttatccacttaaggt
aactCAAATCAATCTCCTCCCATGATTcatattttgtaaaatgttATAGA
CTGAACAGTATTGGTCGTCAAAATATGTGGAAGAATTAGTCATCTTTCAT
GCgactttttaaattgtttttgttaCTTCTGATTAAACCACATGTTTCAA
tatgttggatcaaatgtttaATAATTTCTCATTGTTCTTTTAGGACAGCT
GGGATGCTttagatgaagatgaagataaagaaaaaccaaaaagtaGGATT
ATCAAGATATTTTCATTTCTCAAAAGAAATATCAACTTTGCTAACTTTTT
CCTGGATTATTCTGAAAGATACCCATTTTACGGCCTATCTGACTGAGAAT
TTCATCATTAAATTAATCatcaataaatgaaaaaatgatttgtccaaatt
ttatcaTTACTTCAAAGAAAATACAAGATGTTCGAAAAATTCTGGTTACT
TTCTTCAAGGAATTGTGTTAATATATGATGTATTGTTTTCTCAATCGTTT
AGCTACAACGCagccaaagaaaaagaaaactttggatgaaaagataaaag
aaagagaagaaaaacgtAGACTGGAAAAATTAGCCAGAGAAGAGGTgagg
ttttttaaaaataagtacGGGCGGGTAACTTTTTCATTTATCTTAGCTGC
ACCTGATGTATTGTTACCAGTTTTTAGATAATTGATAAAAGTTGAATGTA
TCATAAAGTTCGAACACTATTTTTCCTGTATTTTAAGATCAGGTCAGCAA
CATCATAAATTCTTATATAAAGCTGATGAACTTTGAACAATAGTTTATAA
CTAAATAGTTAACTTGTGTTAGGTTGGCTCAAAAAACCTTAAAGAAACTT
GTTTACCATTTCAACTCAGGGTTTGATACAATCAATATTTCTAGAGTCTG
TTTAAACTTAAATATTTTGGGCTATAAAATGTTTGTTTCAATGTCATGTT
GTTTTTAGGAGCGGAAACGTGAAGAAGAAGCAAATAGAGAATTAACACCA
GAAGAACAAATGGCTGAAAAACTAAGGCAACAAAGGTAACTTATTACTTA
ACATgacacccccttttcacagacccggtaggattttttcaggcAGTGGA
AGTAAAATTAATTGACCAAAACTCAATACATAATATTTGCATTATGCTAA
AGTAAGTCCGGAAGCAAAATTACCTTTGTGAGTAGTAACTATGGGTTTTT
AATTTACTTTCTCATTATTATGGTCCATTGGGACTTCAAAACAAGTTTTT
GCCAACTtggcaaagctggggaaatTTTGGTGGAGTAAGGTCATTTTTGC
CTAAAGACCCTTGAAAAGTCAATTATTGAAGTTTCTTATTGACAAAAGCA
GATTGTACCCTCTggtagagcttgaagagtagatctcaaAAAAGGGTtca
tttgtctcatttagtCAACTAAAAATCGCCTGGAAATAAATGATACGTCT
GTAAAAATGCAAATTTttatgctgacatcagcatttttgacgaaaaaagt
tACTTCCAACAGACACATCTCAAAGAGTACTATCAATCAGAGGTAAAATT
TATAGGGTTTCCATGGCTaaattttgagatatttgagttttgAAATTTGC
TGACTCAGTGCTTTTCGCGTTTTTGGCCCTTTCCTGATGAAATCGAAATT
ATTCTCTgtaaaaagagtttttttaatAGCTCTATAGCAAAGAATTTGGA
ATTCATATAGATATCAGGCTTGTTTTTAGACAGCCTATAAATGTTCCTCC
GAAAATGGTCCAGTTACTTGCTCTTTCTGGACCTTtacaaaattgtaaat
tatTACTCTATatttatgatgatttttttatcttttcaggCTGCAAGAAG
AATCAGATTTAGAATTAGCAAAGGAAGCGTTTGGTATGGtatcttcttaa
cttttttgatttacttttaatttttagatAAAGATGAAATTACAAGTGTA
TAACAATAACCTAACTTTCCTTGTGAATTTTCGaaggttttgaattttaa
actaAGCGAAATCGAATACCAAGTATTTGAAATTctgttgttttgttttg
caGGAACCACAGAAGACATGCCAGGGGTTAAAACGATAGATAAATTTGTA
CCTGATAATAGGGAAGAATTTAATGAACTATCACAAATGCTTGTCACAAA
ATTACAAGATCTAGAGGTATGGGAACTAATTTTATTACATGTAATGTGTT
TTTACTTTAGATAAATCTCATAGTATACAAACTACTGCTTATTTTTTGAA
GCACTTTTGTTGTTGGACTTTGTTTTATGTTCAATTTAGCAATTGGAAAG
GCCTCTCCTGCTTAATGTTCATTACTTAaggtttttctaagattgacTTT
CGTATACTtggaatttctttgaaataatttttctgttGCGCTGGCTTTTT
GTTCATACGAAAGCAAAAGATCATGTACGAATTTGATCGAAAAtgtttac
acgcttttttttaagaaacatgttattttctcattctcagcctcagcatg
tttcttagatgtttcttagatttttaggcattctgagcctcatgtttctt
aaaagtgtgtttcttaaaaaaaaacgtgtagtgcaTCATTTAGAGAAAAC
TGAAGCTGTCAACCTCCTAAACATGAATGAATATTTCAAATTCAGCTAGA
ATTCTCTGTATTGTTGTCAACAAATTATAGACATGCTAATTTCATCCTTT
GCTTTCTTTTCTACAGAATAAATCGGAATATCCAGGATTTTTGGAAACAC
TATTTCGAGATTGTTGTGCATCGGGTAATTTCTTGAATTCACTAAACCAG
ATTAAACAGAGATTTTCATTACTCTTTGTAAAGTTGAACATGTTCCTTCT
TTTGACAGCATgatgttttctttctttaacaTTAGACTCGTTAgaatttt
taattgaatttcttttatcTATTTTAGCAACCGAATCTTAAGATTGCAAT
GATATTTCCCATAGCGTTTGAGATACTGATTTTACTTGATAAATAGTCAA
taaaattttctagaaattatcaaatttaaaattttttttcttcttctaca
GTTGAAGCAGAAACTATAAAAAAGATCGCTTCAANA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008998	XLOC_008998	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000226	supercontig	sc0000226:45125..49660 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
113.869	107.286	75.4299	75.5206	69.0439	54.4358	93.624	99.6699	95.7935	85.2308	60.9439	55.296	42.6138	44.5727	63.6752	51.799	94.102	66.0355	21.5733	35.7918	47.868	42.5056	76.4911	74.3809	46.6707	48.3875	40.3219	24.6263	54.8316	52.8233

Blast

[Close]

BLAST of TCONS_00016090 vs. Swiss-Prot (Human)
Match: EIF3J (Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 6.938e-21
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 3

Query:  435 LTPEEQMAEKLRQQRLQEESDLELAKEAFGTTEDMPGVKTIDKFVPDNREEFNELSQMLVTKLQDLENKSEYPGFLETLFRDCCASVEAETIKKIAS 725
            LTPEEQ+A+KLR ++LQEESDLELAKE FG    + G   ID   P +R++F E  ++L  K+   E    Y  FLE L RD C S+E + +KKI +
Sbjct:  108 LTPEEQLADKLRLKKLQEESDLELAKETFGVNNAVYG---IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITN 201

The following BLAST results are available for this feature:

BLAST of TCONS_00016090 vs. Swiss-Prot (Human)

BLAST of TCONS_00016090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF3J	6.938e-21	48.45	Eukaryotic translation initiation factor 3 subunit...	[more]

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TCONS_00016090 (transcript) - C. hemisphaerica