TCONS_00016080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016080
Unique NameTCONS_00016080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016080 ID=TCONS_00016080|Name=TCONS_00016080|organism=Clytia hemisphaerica|type=transcript|length=743bp
AAGGAGAAAGATATATGGGACTTTTGACGGGAAATTGCAATTCCAATTCC
AATTAGTATATTATAGAGTTTCGTATTTAGGAGTATTTAGTATTAAAATC
AAACgcgttggtgaaatatttcttaCCTTTGACAACGGGTTGAATGCTAA
TGATACACCAGGGAATATTGTCAATTACCGGTACCAAGAGAAATAGGTTG
GCCTGGTTTGCTTTTCCAATCTTTCGAACGTGCAACAGATCCATGATATC
TTCGGCAGTCGTTaccataaatttttcattagatGCAAGACCGATCACTT
GATTATTTCTTATTCTCAATGCTGGTACAATGACTGTTGCATCCACAGCT
AAAATGAAAGGCCCTGGAAAACCCCATAGCTGGTACAATTTTGAGGCATA
CGCAAAAGCCCTATTTTCAATGCTCATTGGAagtaaaaatgacattcttg
cTTGTCGGTACATGGTCTGGGACGAGGGTCCACTTAATTCATTTGAAAGG
ATTGTAGCTATCTTTTTACCATCATAATTTAAGACAGTGGCAAAAAGTGT
TGACTCGGTCCAGCGTTTTCCAGTTTTCTTTTccaaattgtaaaaaatgt
ctCGAACAAAATTGTACAGTGTCTCGTGTTGTGGGTTCGACTTTATGGCG
GTTATTTTCGAGGCCAATTCAATGACGTCTTTCTTGTAAGGCTTGTCGAC
TCCTTTGTTGATCATCAGACTTTCTTTAATGTCGACTCCCAGG
Run BLAST on NCBI

protein sequence of TCONS_00016080-protein

>TCONS_00016080-protein ID=TCONS_00016080-protein|Name=TCONS_00016080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
LGVDIKESLMINKGVDKPYKKDVIELASKITAIKSNPQHETLYNFVRDIF
YNLEKKTGKRWTESTLFATVLNYDGKKIATILSNELSGPSSQTMYRQARM
SFLLPMSIENRAFAYASKLYQLWGFPGPFILAVDATVIVPALRIRNNQVI
GLASNEKFMVTTAEDIMDLLHVRKIGKANQANLFLLVPVIDNIPWCIISI
QPVVKGKKYFTNAFDFNTKYS
Run BLAST on NCBI

transcript from alignment at sc0000225:362925..363667

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016080 ID=TCONS_00016080|Name=TCONS_00016080|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000225:362925..363667 (Clytia hemisphaerica)
CCTGGGAGTCGACATTAAAGAAAGTCTGATGATCAACAAAGGAGTCGACA
AGCCTTACAAGAAAGACGTCATTGAATTGGCCTCGAAAATAACCGCCATA
AAGTCGAACCCACAACACGAGACACTGTACAATTTTGTTCGagacatttt
ttacaatttggAAAAGAAAACTGGAAAACGCTGGACCGAGTCAACACTTT
TTGCCACTGTCTTAAATTATGATGGTAAAAAGATAGCTACAATCCTTTCA
AATGAATTAAGTGGACCCTCGTCCCAGACCATGTACCGACAAgcaagaat
gtcatttttactTCCAATGAGCATTGAAAATAGGGCTTTTGCGTATGCCT
CAAAATTGTACCAGCTATGGGGTTTTCCAGGGCCTTTCATTTTAGCTGTG
GATGCAACAGTCATTGTACCAGCATTGAGAATAAGAAATAATCAAGTGAT
CGGTCTTGCatctaatgaaaaatttatggtAACGACTGCCGAAGATATCA
TGGATCTGTTGCACGTTCGAAAGATTGGAAAAGCAAACCAGGCCAACCTA
TTTCTCTTGGTACCGGTAATTGACAATATTCCCTGGTGTATCATTAGCAT
TCAACCCGTTGTCAAAGGtaagaaatatttcaccaacgcGTTTGATTTTA
ATACTAAATACTCCTAAATACGAAACTCTATAATATACTAATTGGAATTG
GAATTGCAATTTCCCGTCAAAAGTCCCATATATCTTTCTCCTT

Coding sequence (CDS) from alignment at sc0000225:362925..363667

>TCONS_00016080 ID=TCONS_00016080|Name=TCONS_00016080|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000225:362925..363667 (Clytia hemisphaerica)
CTGGGAGTCGACATTAAAGAAAGTCTGATGATCAACAAAGGAGTCGACAA
GCCTTACAAGAAAGACGTCATTGAATTGGCCTCGAAAATAACCGCCATAA
AGTCGAACCCACAACACGAGACACTGTACAATTTTGTTCGagacattttt
tacaatttggAAAAGAAAACTGGAAAACGCTGGACCGAGTCAACACTTTT
TGCCACTGTCTTAAATTATGATGGTAAAAAGATAGCTACAATCCTTTCAA
ATGAATTAAGTGGACCCTCGTCCCAGACCATGTACCGACAAgcaagaatg
tcatttttactTCCAATGAGCATTGAAAATAGGGCTTTTGCGTATGCCTC
AAAATTGTACCAGCTATGGGGTTTTCCAGGGCCTTTCATTTTAGCTGTGG
ATGCAACAGTCATTGTACCAGCATTGAGAATAAGAAATAATCAAGTGATC
GGTCTTGCatctaatgaaaaatttatggtAACGACTGCCGAAGATATCAT
GGATCTGTTGCACGTTCGAAAGATTGGAAAAGCAAACCAGGCCAACCTAT
TTCTCTTGGTACCGGTAATTGACAATATTCCCTGGTGTATCATTAGCATT
CAACCCGTTGTCAAAGGtaagaaatatttcaccaacgcGTTTGATTTTAA
TACTAAATACTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008990XLOC_008990Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016080-proteinTCONS_00016080-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016080-exon-sc0000225-1491911889:362925..363667TCONS_00016080-exon-sc0000225-1491911889:362925..363667Clytia hemisphaericaexon
TCONS_00016080-exon-sc0000225-1510915933:362925..363667TCONS_00016080-exon-sc0000225-1510915933:362925..363667Clytia hemisphaericaexon
TCONS_00016080-exon-sc0000225-1575043694:362925..363667TCONS_00016080-exon-sc0000225-1575043694:362925..363667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:362925..363667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0707992	0.427081	0.239897	0.223943	0	0.471172	0.0884943	0.220928	0.412985	0	0	0	0	0	0	0	0	0	0	0.213994	0.954921	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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