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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016071 ID=TCONS_00016071|Name=TCONS_00016071|organism=Clytia hemisphaerica|type=transcript|length=1395bp
gtcctagcttatttattgattttgtcGCCCCTGTTTCTTTGGCGCCCCCT
CGAAAAAACTCCGCTGAAGGGCCATGGCTAAAAGAAAGGATTTCAGTTTT
ACAAGATTTTACATGTGAATCTGCATTTCTTTTGATAATGAAACTTTATA
TTTGAAATTCATACCTTATAGTTATAACAAATCATTATTTTATCATACCG
AAAACAATGACAGAATCTTTATCGCCATAATAAAAATGGCCATCTACATT
TCCCTTTCCACTATACCAGCTATCATAATTTGTTTCCGTTCTGTTTTTCA
GAATCTCCAATATATTAGATTGATCGGTTGGATGAAGTAACCATACTTTC
CCTTTATTCCAAAGATCATTATGAAATTCATCAACAACAATACAGACATG
TCCCCACCATCTTTCCCGTTTTATCCTCTCTGATGTAAAGAATATCTCGC
CAAATCGTTGGTCCATCTCTTTCCgacaaaaaaagtattttgcaTTATCA
TAATACAATTTTCCATTCGTCATAAACGACGAAATGTGTTCATACCATTG
CTTATAAGATGGGGCTGGGTTCAACTTCTTGACTACCAACCCTTCCATAA
ACTTTCCTGCACCCCAAATGAGGCTCTCCATTTCTGGCAATTCATCAATA
GAAGTTCCAATCTTTCTTTGAATAGCAACTAGGTCATCCTTATTCGCttc
cattttttgaattatttctaCCTTCATTGCAGCaagtttgttttcaaaac
caTCAATCTTGGTTTTCAATTGAATGATTTTGTTATCTTTTTCAACGGAT
TGGTTGTTGATTTCAACAACTTTTGCGTCAATCATGGCAAGTTTGGCATC
AATTTCGGTTTTCAATTGGATGATTTTGTTATCTTTTTCAACGGATTGGT
TGTTGATTTCAACAACTTTTGCATCAATCATGGCAAGTTTGGCATCGTTT
AGAGTAATCTTGTTGTCACATTCTTGAAATCTTGCAACTTCATTTTCGTC
GCCATTATCAGTCATTTTCGATTTAACCTCAAATTCTTTCTGCTCCATTT
TGAGCTTCTCGATTTCGCGTTGGTGCTTCATTGTTTGAATAATATTGTCT
TTTTCACTCAAAGTTTTCTCAAACTCCAACACTTTAATTTGATGCTCGTA
ATTCAAGACTTGAATTTTCCGTTCGTAATCTTCTTTCATTTTCGAcattt
cttcttttaatttttgaatttggtCACCATTTTGATTTGGTTTCAAACGT
AAAGGATCGGTAGCACAATGAGCAGAATCCATTTTTGATGTCTTTCTCTC
TTCAAGAAAATATTATCATCTTAAAAGTTGTCATGCTCTTTCTTGCAATA
AAGTATACTGTCTgtgttgtttgttttttaaataatctttttttt Run BLAST on NCBI protein sequence of TCONS_00016071-protein >TCONS_00016071-protein ID=TCONS_00016071-protein|Name=TCONS_00016071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDSAHCATDPLRLKPNQNGDQIQKLKEEMSKMKEDYERKIQVLNYEHQIK
VLEFEKTLSEKDNIIQTMKHQREIEKLKMEQKEFEVKSKMTDNGDENEVA
RFQECDNKITLNDAKLAMIDAKVVEINNQSVEKDNKIIQLKTEIDAKLAM
IDAKVVEINNQSVEKDNKIIQLKTKIDGFENKLAAMKVEIIQKMEANKDD
LVAIQRKIGTSIDELPEMESLIWGAGKFMEGLVVKKLNPAPSYKQWYEHI
SSFMTNGKLYYDNAKYFFCRKEMDQRFGEIFFTSERIKRERWWGHVCIVV
DEFHNDLWNKGKVWLLHPTDQSNILEILKNRTETNYDSWYSGKGNVDGHF
YYGDKDSVIVFGMIK Run BLAST on NCBI transcript from alignment at sc0000225:96480..97874 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016071 ID=TCONS_00016071|Name=TCONS_00016071|organism=Clytia hemisphaerica|type=transcript|length=1395bp|location=Sequence derived from alignment at sc0000225:96480..97874 (Clytia hemisphaerica)
aaaaaaaagattatttaaaaaacaaacaacacAGACAGTATACTTTATTG
CAAGAAAGAGCATGACAACTTTTAAGATGATAATATTTTCTTGAAGAGAG
AAAGACATCAAAAATGGATTCTGCTCATTGTGCTACCGATCCTTTACGTT
TGAAACCAAATCAAAATGGTGaccaaattcaaaaattaaaagaagaaatg
TCGAAAATGAAAGAAGATTACGAACGGAAAATTCAAGTCTTGAATTACGA
GCATCAAATTAAAGTGTTGGAGTTTGAGAAAACTTTGAGTGAAAAAGACA
ATATTATTCAAACAATGAAGCACCAACGCGAAATCGAGAAGCTCAAAATG
GAGCAGAAAGAATTTGAGGTTAAATCGAAAATGACTGATAATGGCGACGA
AAATGAAGTTGCAAGATTTCAAGAATGTGACAACAAGATTACTCTAAACG
ATGCCAAACTTGCCATGATTGATGCAAAAGTTGTTGAAATCAACAACCAA
TCCGTTGAAAAAGATAACAAAATCATCCAATTGAAAACCGAAATTGATGC
CAAACTTGCCATGATTGACGCAAAAGTTGTTGAAATCAACAACCAATCCG
TTGAAAAAGATAACAAAATCATTCAATTGAAAACCAAGATTGAtggtttt
gaaaacaaacttGCTGCAATGAAGGtagaaataattcaaaaaatggaaGC
GAATAAGGATGACCTAGTTGCTATTCAAAGAAAGATTGGAACTTCTATTG
ATGAATTGCCAGAAATGGAGAGCCTCATTTGGGGTGCAGGAAAGTTTATG
GAAGGGTTGGTAGTCAAGAAGTTGAACCCAGCCCCATCTTATAAGCAATG
GTATGAACACATTTCGTCGTTTATGACGAATGGAAAATTGTATTATGATA
AtgcaaaatactttttttgtcGGAAAGAGATGGACCAACGATTTGGCGAG
ATATTCTTTACATCAGAGAGGATAAAACGGGAAAGATGGTGGGGACATGT
CTGTATTGTTGTTGATGAATTTCATAATGATCTTTGGAATAAAGGGAAAG
TATGGTTACTTCATCCAACCGATCAATCTAATATATTGGAGATTCTGAAA
AACAGAACGGAAACAAATTATGATAGCTGGTATAGTGGAAAGGGAAATGT
AGATGGCCATTTTTATTATGGCGATAAAGATTCTGTCATTGTTTTCGGTA
TGATAAAATAATGATTTGTTATAACTATAAGGTATGAATTTCAAATATAA
AGTTTCATTATCAAAAGAAATGCAGATTCACATGTAAAATCTTGTAAAAC
TGAAATCCTTTCTTTTAGCCATGGCCCTTCAGCGGAGTTTTTTCGAGGGG
GCGCCAAAGAAACAGGGGCgacaaaatcaataaataagctaggac Coding sequence (CDS) from alignment at sc0000225:96480..97874 >TCONS_00016071 ID=TCONS_00016071|Name=TCONS_00016071|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000225:96480..97874 (Clytia hemisphaerica)
ATGGATTCTGCTCATTGTGCTACCGATCCTTTACGTTTGAAACCAAATCA
AAATGGTGaccaaattcaaaaattaaaagaagaaatgTCGAAAATGAAAG
AAGATTACGAACGGAAAATTCAAGTCTTGAATTACGAGCATCAAATTAAA
GTGTTGGAGTTTGAGAAAACTTTGAGTGAAAAAGACAATATTATTCAAAC
AATGAAGCACCAACGCGAAATCGAGAAGCTCAAAATGGAGCAGAAAGAAT
TTGAGGTTAAATCGAAAATGACTGATAATGGCGACGAAAATGAAGTTGCA
AGATTTCAAGAATGTGACAACAAGATTACTCTAAACGATGCCAAACTTGC
CATGATTGATGCAAAAGTTGTTGAAATCAACAACCAATCCGTTGAAAAAG
ATAACAAAATCATCCAATTGAAAACCGAAATTGATGCCAAACTTGCCATG
ATTGACGCAAAAGTTGTTGAAATCAACAACCAATCCGTTGAAAAAGATAA
CAAAATCATTCAATTGAAAACCAAGATTGAtggttttgaaaacaaacttG
CTGCAATGAAGGtagaaataattcaaaaaatggaaGCGAATAAGGATGAC
CTAGTTGCTATTCAAAGAAAGATTGGAACTTCTATTGATGAATTGCCAGA
AATGGAGAGCCTCATTTGGGGTGCAGGAAAGTTTATGGAAGGGTTGGTAG
TCAAGAAGTTGAACCCAGCCCCATCTTATAAGCAATGGTATGAACACATT
TCGTCGTTTATGACGAATGGAAAATTGTATTATGATAAtgcaaaatactt
tttttgtcGGAAAGAGATGGACCAACGATTTGGCGAGATATTCTTTACAT
CAGAGAGGATAAAACGGGAAAGATGGTGGGGACATGTCTGTATTGTTGTT
GATGAATTTCATAATGATCTTTGGAATAAAGGGAAAGTATGGTTACTTCA
TCCAACCGATCAATCTAATATATTGGAGATTCTGAAAAACAGAACGGAAA
CAAATTATGATAGCTGGTATAGTGGAAAGGGAAATGTAGATGGCCATTTT
TATTATGGCGATAAAGATTCTGTCATTGTTTTCGGTATGATAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016071-exon-sc0000225-1491911889:96480..97874 | TCONS_00016071-exon-sc0000225-1491911889:96480..97874 | Clytia hemisphaerica | exon |
| TCONS_00016071-exon-sc0000225-1510915933:96480..97874 | TCONS_00016071-exon-sc0000225-1510915933:96480..97874 | Clytia hemisphaerica | exon |
| TCONS_00016071-exon-sc0000225-1575043694:96480..97874 | TCONS_00016071-exon-sc0000225-1575043694:96480..97874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:96480..97874 . |
Blast
The following BLAST results are available for this feature:
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