TCONS_00016070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016070
Unique NameTCONS_00016070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016070 ID=TCONS_00016070|Name=TCONS_00016070|organism=Clytia hemisphaerica|type=transcript|length=270bp
ACCTCTCTCTCAAAAATTATTGTGGTTCTTTATCAATCAGTTTCGGTTCG
CAATGTAataatcaaaatgttttttatatacTTTAATATTCTGACAGTCA
AAAAGTTGGCTTTATacttttttgtcaaaagatGCATTGATTAAAATGTG
ACGCAGTTAATACACTTGGGACTCTCCCGTAAAGAAAAGGAGTGCGGGTG
TACACCTCTGTGGACCTGTGGAGAGccgttttttttgtcaatagtAATTT
TCACATATCACGATAATCAC
Run BLAST on NCBI

transcript from alignment at sc0000225:53755..54024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016070 ID=TCONS_00016070|Name=TCONS_00016070|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at sc0000225:53755..54024 (Clytia hemisphaerica)
GTGATTATCGTGATATGTGAAAATTactattgacaaaaaaaacggCTCTC
CACAGGTCCACAGAGGTGTACACCCGCACTCCTTTTCTTTACGGGAGAGT
CCCAAGTGTATTAACTGCGTCACATTTTAATCAATGCatcttttgacaaa
aaagtATAAAGCCAACTTTTTGACTGTCAGAATATTAAAgtatataaaaa
acattttgattatTACATTGCGAACCGAAACTGATTGATAAAGAACCACA
ATAATTTTTGAGAGAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008980XLOC_008980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016070-exon-sc0000225-1491911889:53755..54024TCONS_00016070-exon-sc0000225-1491911889:53755..54024Clytia hemisphaericaexon
TCONS_00016070-exon-sc0000225-1510915933:53755..54024TCONS_00016070-exon-sc0000225-1510915933:53755..54024Clytia hemisphaericaexon
TCONS_00016070-exon-sc0000225-1575043694:53755..54024TCONS_00016070-exon-sc0000225-1575043694:53755..54024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:53755..54024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566726	0	0	1.88334	2.29279	1.81179	1.45723	1.36424	0	1.18309	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.17218	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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