TCONS_00016062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016062
Unique NameTCONS_00016062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016062 ID=TCONS_00016062|Name=TCONS_00016062|organism=Clytia hemisphaerica|type=transcript|length=2400bp
TTCTTCAACAACTGCTAGTCTTGTGGATGGTCTGAGAAATAGTGACAAAA
GTGTTTTAATaaaatcaccAAGTCAGTGAAGATGAAGAAAacagttcttc
tttttttattggtGTGCCGAGTTTTTGGTCAAAATGTTGTGAAGAAGGCA
TCAATCGAGACACTGGATAATCTGGCTACTCAGATTCGAGAGAAAATCGA
TGGCAATCCACGTTTAGCAGCTGGGTTTGTGCGGTTATCATTCCATGATT
GTGTTGGTGAAGATCGATGTGATGGATGCATCAATTACCAGGAGCCGGAC
AACGCTGGTATTCCTCGTTACACAGCTGTACTAAATGATCTTTACGAGCC
TGTTAAAAATGATATTACCAGAGCTGATCTTTATGCTTATGCTGGCGTTG
TTGCTGCTAATTATGCTTCTTCAAGAGATGCTGTTTTCGATATGACAAAA
TTCAAAGTTGGACGCCACGATTGTAGTGAATCTGGTGATGAAACAGATCT
AGATGAGCATTTCCCGTCCAATAACTTCCAGAATGTAGAGGAACTACATG
CCTATTTCAACAAAGAGTTTGGTCTGTCTTTACAAGAAAGTGTAGCCTTG
ATGGGTGCTCATAGTCTTGGTCGTATGGAAACTGCAAATTCTGGATATGA
AGGACCTTGGGTACCTGGAACTGGGCAAGATGTCTTAAACAGCGACTACT
ATCGTGAAGTGGTGAATGTTCCCTGGTTCCTTAAAACAATGCCAACAAAT
AGCGCCAAACATCAGTGGCAACGCCGAGCACCAAGTCTTGGTGTAGGGAA
TTCACCTGGGCGGAATCGACAACCTGATAATGTACTTCTAAACACTGATG
CTGCACTTGCTGTTAACCTTCGATTGAACAAAGACACTGGTGCTTTTCAG
GATGGAGCTGAATGTGTCATGTGTCCACCAAATGGACCACCACCACCAGG
ACGTATCCCATGTTGTGATGAAGACACAGAAGGTCGTGGAAAATGTATCG
AATATGTCGATGATAATTCAGGATGGATGAAAGATTTTGAAGTTGCATTC
TACAAGATGATTGATAACCCAGATGATGATCTTTCAGTACCAACAGCAGC
TCCAACAGCAGCTCCAACAGCAGCTCCAACAGCAGCTCCAACAGCAGCTC
CAACAGCAGCTCCAACAGAAGCCCCCGCCCCAGCAACACGCCCACCACGT
GGTGGTGGTCGTGGAGGTGGCAGAGGTGGCCGCCGCAGTGACCaaataaa
gaagaaagaagCTTCTGCTGAAAAGATAAATGAAGTGTTGCATGATCTTC
AAGATGTTCTAaaagaagtcaaaaaaatggtctaaaaatgaCACTACTCT
AAGAACATGATTTGTGGTATAGCATATTCAAGAAGTTTTCAGAGAAGTTA
AGGAGTTggtctaaaaatagacatttgTTATGAACAGTATATATGTTTCC
TCTGTAAGGGATGTGCAACTTTATATTATTTCACTTTCACTATTTTCTTT
CGTTATTGTAATTTATTTACTTATattttaatagcttttgtaAACAGCTT
AACtgataacacccccttctcacagacttgGTAGGATTTCAGCCAGTAGG
GATAAGTTTAACGGACTGCACGAACTCGATGCGAATTGATATTTCCAATA
TTTTTATTGCTGGAGATTTCAATTCTCTTGTTTTCAAGGCAGAAAATTTA
GTGCGGATAGGAAAAAAGCATCATATTTTGCATCGAAGATTGTTTATTTC
GGTTCTTTTACACCGGGGACGATGTGTTATacaattttttcagtgggaag
ggttcccagtgggtctgtgagaagggagtgtctGATACTACTTAAGTTTT
AATTTGTCTCATTATTTAATCATTTGATTTGTAAAAGttcattaaaaaaa
gtttcttttcttttttatctaattccttatgtttcaataaattcATAAAT
AATTGCATCGATGAGTCCCATGGAGTCCTTTCTTCATGAAAACCAGTAAA
ATGTTGCTGCggcttggctgttcttatttttttggtactttgagcctcaa
attgttcttatcattttttatttacagGGTTAATTGTGGTATTTTAGgtg
ttatacccaatttttaccaCTTTGACCTGTAAATTgcaagaaattgagta
attttagacccagcattgttcttaaattgttcttattttttggcaatttt
gagcctcattacTCTTATAAAATGTTCatgaaagaaaaaagtgtaagTTT
GAAATATATTGGGATCTTTGTATCTTTGGGtctttcgttgtttttttcag
aatgaaaaatttgagtGAGAATTGTGAGTTTGGCATTTTTCATCGGATAT
TTCAAATTGCTTGGGATTTGGATTTGTGAAGAGTTTAGTGGCTTCAAGGC
Run BLAST on NCBI

transcript from alignment at sc0000225:291356..294415-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016062 ID=TCONS_00016062|Name=TCONS_00016062|organism=Clytia hemisphaerica|type=transcript|length=3060bp|location=Sequence derived from alignment at sc0000225:291356..294415- (Clytia hemisphaerica)
TTCTTCAACAACTGCTAGTCTTGTGGATGGTCTGAGAAATAGTGACAAAA
GTGTTTTAATGTAAGTGAATCTTTTTGTTCTTTTTTGCTTTTGAAAGGGC
GTTAACAACCTGATAGAAACGAGGAGACTTGAGTGGATGGGTAGTCAGAT
CAACCTGGTGATGAACAAATAATTTGATTGACTACGGATTCATTCATTTT
TGGCGTGTAGGTATAGCCAGGCTGTCTTCTCGTTAACAGATTAGACGAAA
AGTGAGACACAGTNTAATTTGATTGACTACGGATTCATTCATTTTTGGCG
TGTAGGTATTGCCAGGCTGTCTTCTCGTTAACAGATTAGACGAAAAGTGA
GACAGCCATATCCTTGTTAGAAGAATCTCTCTAACTTTCAACCAAAAGGA
ACTTTTTAAATTCAAATCTCTTCAAAGTGACGATCTTCATCTTTTCTCAT
CGGATAAATTTCCATAAAAATATTTGAGTATTACTTACCGTAGAAGAAAT
TTTCCAAGAAAGAATCTGGAAAATCTTTGAGCAAAATTTGCCCAAATTTT
ACCGAAATCACTCTCTTTGAGGAAAAGAATTCTATATTTTGACTTTGAAG
TTTTTAGCCGGTTTTTATAACCGTTAGAGAGATTTTTAAGATGTGAAAAT
TTCTTACACTGCTTGTACATACCTGCTACAAATTTATTTCCTTTCAACCT
TTTTTGTTTTAATTTTTCAGAAAATCACCAAGTCAGTGAAGATGAAGAAA
ACAGTTCTTCTTTTTTTATTGGTGTGCCGAGTTTTTGGTCAAAATGTTGT
GAAGAAGGCATCAATCGAGACACTGGATAATCTGGCTACTCAGATTCGAG
AGAAAATCGATGGCAATCCACGTTTAGCAGCTGGGTTTGTGCGGTTATCA
TTCCATGATTGTGTTGGTGAAGATCGATGTGATGGATGCATCAATTACCA
GGAGCCGGACAACGCTGGTATTCCTCGTTACACAGCTGTACTAAATGATC
TTTACGAGCCTGTTAAAAATGATATTACCAGAGCTGATCTTTATGCTTAT
GCTGGCGTTGTTGCTGCTAATTATGCTTCTTCAAGAGATGCTGTTTTCGA
TATGACAAAATTCAAAGTTGGACGCCACGATTGTAGTGAATCTGGTGATG
AAACAGATCTAGATGAGCATTTCCCGTCCAATAACTTCCAGAATGTAGAG
GAACTACATGCCTATTTCAACAAAGAGTTTGGTCTGTCTTTACAAGAAAG
TGTAGCCTTGATGGGTGCTCATAGTCTTGGTCGTATGGAAACTGCAAATT
CTGGATATGAAGGACCTTGGGTACCTGGAACTGGGCAAGATGTCTTAAAC
AGCGACTACTATCGTGAAGTGGTGAATGTTCCCTGGTTCCTTAAAACAAT
GCCAACAAATAGCGCCAAACATCAGTGGCAACGCCGAGCACCAAGTCTTG
GTGTAGGGAATTCACCTGGGCGGAATCGACAACCTGATAATGTACTTCTA
AACACTGATGCTGCACTTGCTGTTAACCTTCGATTGAACAAAGACACTGG
TGCTTTTCAGGATGGAGCTGAATGTGTCATGTGTCCACCAAATGGACCAC
CACCACCAGGACGTATCCCATGTTGTGATGAAGACACAGAAGGTCGTGGA
AAATGTATCGAATATGTCGATGATAATTCAGGATGGATGAAAGATTTTGA
AGTTGCATTCTACAAGATGATTGATAACCCAGATGATGATCTTTCAGTAC
CAACAGCAGCTCCAACAGCAGCTCCAACAGCAGCTCCAACAGCAGCTCCA
ACAGCAGCTCCAACAGCAGCTCCAACAGAAGCCCCCGCCCCAGCAACACG
CCCACCACGTGGTGGTGGTCGTGGAGGTGGCAGAGGTGGCCGCCGCAGTG
ACCAAATAAAGAAGAAAGAAGCTTCTGCTGAAAAGATAAATGAAGTGTTG
CATGATCTTCAAGATGTTCTAAAAGAAGTCAAAAAAATGGTCTAAAAATG
ACACTACTCTAAGAACATGATTTGTGGTATAGCATATTCAAGAAGTTTTC
AGAGAAGTTAAGGAGTTGGTCTAAAAATAGACATTTGTTATGAACAGTAT
ATATGTTTCCTCTGTAAGGGATGTGCAACTTTATATTATTTCACTTTCAC
TATTTTCTTTCGTTATTGTAATTTATTTACTTATATTTTAATAGCTTTTG
TAAACAGCTTAACTGATAACACCCCCTTCTCACAGACTTGGTAGGATTTC
AGCCAGTAGGGATAAGTTTAACGGACTGCACGAACTCGATGCGAATTGAT
ATTTCCAATATTTTTATTGCTGGAGATTTCAATTCTCTTGTTTTCAAGGC
AGAAAATTTAGTGCGGATAGGAAAAAAGCATCATATTTTGCATCGAAGAT
TGTTTATTTCGGTTCTTTTACACCGGGGACGATGTGTTATACAATTTTTT
CAGTGGGAAGGGTTCCCAGTGGGTCTGTGAGAAGGGAGTGTCTGATACTA
CTTAAGTTTTAATTTGTCTCATTATTTAATCATTTGATTTGTAAAAGTTC
ATTAAAAAAAGTTTCTTTTCTTTTTTATCTAATTCCTTATGTTTCAATAA
ATTCATAAATAATTGCATCGATGAGTCCCATGGAGTCCTTTCTTCATGAA
AACCAGTAAAATGTTGCTGCGGCTTGGCTGTTCTTATTTTTTTGGTACTT
TGAGCCTCAAATTGTTCTTATCATTTTTTATTTACAGGGTTAATTGTGGT
ATTTTAGGTGTTATACCCAATTTTTACCACTTTGACCTGTAAATTGCAAG
AAATTGAGTAATTTTAGACCCAGCATTGTTCTTAAATTGTTCTTATTTTT
TGGCAATTTTGAGCCTCATTACTCTTATAAAATGTTCATGAAAGAAAAAA
GTGTAAGTTTGAAATATATTGGGATCTTTGTATCTTTGGGTCTTTCGTTG
TTTTTTTCAGAATGAAAAATTTGAGTGAGAATTGTGAGTTTGGCATTTTT
CATCGGATATTTCAAATTGCTTGGGATTTGGATTTGTGAAGAGTTTAGTG
GCTTCAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008975XLOC_008975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016062-exon-sc0000225-1575043694:294356..294415TCONS_00016062-exon-sc0000225-1575043694:294356..294415Clytia hemisphaericaexon
TCONS_00016062-exon-sc0000225-1575043694:291356..293695TCONS_00016062-exon-sc0000225-1575043694:291356..293695Clytia hemisphaericaexon
TCONS_00016062-exon-sc0000225-1510915933:294356..294415TCONS_00016062-exon-sc0000225-1510915933:294356..294415Clytia hemisphaericaexon
TCONS_00016062-exon-sc0000225-1510915933:291356..293695TCONS_00016062-exon-sc0000225-1510915933:291356..293695Clytia hemisphaericaexon
TCONS_00016062-exon-sc0000225-1491911889:294356..294415TCONS_00016062-exon-sc0000225-1491911889:294356..294415Clytia hemisphaericaexon
TCONS_00016062-exon-sc0000225-1491911889:291356..293695TCONS_00016062-exon-sc0000225-1491911889:291356..293695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:291356..294415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51045	3.09538	3.59962	2.22636	0	0	0	0.090322	0	0	0	0	78.6958	47.703	0	0.255616	133.628	167.569	224.194	401.45	202.926	211.092	29.3899	39.0999	0	0	42.8959	25.1497	0.425983	0.000777705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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