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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016058 ID=TCONS_00016058|Name=TCONS_00016058|organism=Clytia hemisphaerica|type=transcript|length=1572bp
caatccagggagaaagagtggcgctcTCTCCTAcattcgggtagatagct
atcgaaagaggagccttcgggtcgcctccgactgcggccacagacttact
tacttatgaaTCTATTGCTTTCAGAGGAAGAATATCAAGAACAGATTGGC
ATTAAACCTCGCGATTCCTTCTTTGTCAAAACACTCAGAAGTTTTGAAGA
TGAAAGGAGACAGAAAGTTTTCAATAAAGATGAAATTCTGCACGTCAAAG
ATACCAGCGAATCAAACCAGTATTGGATAGCATACAGAAAAAATAACATT
GGAAATACTCCTCCATTAAAAATACCGTCTATGAGATCACATTTTTCTCG
GCAATATGCAGATCACACGTATCAAGTAATCGATGCTGATGAGCCAGCAC
CACCACCGCCACCGCAGAGAAGaggattttttaactttggtgGAAATAGA
AGCTCTTCCATTCAAGatcTTGACACATTTTACGAACTACTGGATCCGGT
AGAAGTGAGACGTGCGTACGAACAAGACAATATGGGACCTAGTATTGCTA
TGAATGGTGTGGTCAACGGATAAATCTGAAAATCTAGCCGGTAACCGGGT
AAAAATACTACTTTATCGGATTACAGTTATTAGTTGCGACTCTTAGCATT
CGAGTACTGCCGAAGAGACGgaaatttacaagaaaaaacCAAATTTTATG
AAATGTGTGAACTTGTCGTCCCTCTAAAGTCTAGACTTacgtagacagga
gacccgtcgtgtgtttttttataatcgttgatgtacacaagacgggttcg
agctgtgagtctaatattggactcacattttttacagtgggaaattcgaa
tttagcgctatcctcacttactaaaataaaaaccaaatttcgaaagttgc
gctttctctaagaaagtgtgaccagtaaaagaataacaaaatttgattgg
ctatgttttcaaccgttattaggatctgagaaattgctatacatttcgcc
atcagtttatcaaagaagaaatcatagcatggattcccaggctaaagACT
TACGTGACTgatttttgttatatttttgtcgaaattaGATATTGTAGACT
TCACAACCCTCTTAGCAAGATTTTGACtatccagaaaaattttcctttgt
ccCTCCAAATATCCTAATTATGATTGGAAGAATTTACACAATATACCAGA
TAATAATGGACGAAATGTATAAAGGACTTACAGTTATCTGACctgctcct
ttagagctttaacgTGGGCGGCCAAATTTTATAGTGGCGCCCGCCAATCC
AAAATCGGAATACCACATTATTTCGAACCACCGGGTTTTCGATCATTAGA
CTTCAGAATTATCAGAATTAAGAAATAGTTTACGTATGTTTGATATGCAG
GCCATTATATAGGGAGTATTTTAAATAGAGAATTTCTCTTTACTCAAatc
ttttcatttcaaattatgTTATTTACGTATTTTAGAAAATTCTGTATCTA
TGTTATGTAAATTTGACAATGGCTTTTGTAAATATAATTGTCTTTTGTAT
GGAATTTAAAGCTTATATCCAA Run BLAST on NCBI transcript from alignment at sc0000225:228400..234952- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016058 ID=TCONS_00016058|Name=TCONS_00016058|organism=Clytia hemisphaerica|type=transcript|length=6553bp|location=Sequence derived from alignment at sc0000225:228400..234952- (Clytia hemisphaerica)
CAATCCAGGGAGAAAGAGTGGCGCTCTCTCCTACATTCGGGTAGATAGCT
ATCGAAAGAGGAGCCTTCGGGTCGCCTCCGACTGCGGCCACAGACTTACT
TACTTATGAATCTATTGCTTTCAGAGGAAGAATATCAAGAACAGATTGGC
ATTAAACCTCGCGATTCCTTCTTTGTCAAGTAAGAAATTTAAATCTATTT
TGGTGTCCCAGCTGACTAACAACGTTGTTTCAACGTTGATGAAATATTCA
CAACGTCCATACAACGTTAGATGAACGTTGAAATAACGCTTTTGTCAGCT
GGGATTAGACTATTATGTCCCATTTATCTGTTCTTATTTTGTTCTAATAA
TTTTCGCTGAGTATATTCTGGAGTCGATGAAGCTAAAATATCACTAAAAT
GTGAGAGAGTTTTTGTGTCGAATTTTGCGAAACAAAAAACAAATAAAATC
TAATTTCCCCAAATTTTTCAGAATAGGTACCCTGTAATTCAGGGGTGGTG
CCCTCCTTAATTCTAGTGAACTGCAGTTGCAATACTTTCAACCTTTCTGA
GACTAGTACCAAAGTGATTGTACCTAACCCTTAGCTTTTTTCTCTTCTCC
TATTCCTTCTCTTTATCTGAAAAATTGGGAGGAAGATTTTGAGAGATTAG
CAATAATATTTTTGAGAACCTATTTCATATATACATGAAATAGTCAACAA
TCTCCGTACTAACCCAGTGCCGTAGCAACTGGGGGGGGGGGCAAGGGGGG
CTATGCCCCCCCCCCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCC
CCCCCCCTCCCCTAATAATTTTTTCAAAAATAGTTATTTTGCAAAATGCA
AAGTTTTTCTTTTTTAATTTGTCATAATTGTCTTTATGTGCATGTTTTGA
GTGTATTTTTAAGCCATCTAGAGCTCAAATTTTCAGAATTTCCCCCCTCG
GGCCAAACCATGGTTGGCCCTCGCGGTGTCACTAAACTTCATCCCCCCCC
CCAATATGAAAATGCCTCCTACGGCACTATAGCCTAACCTATATTATTCG
AATCGTTCTATAATTTGAACTAAATCATCGGTACCCTCCGCTGGAAAGTT
GTAAAAAAGAATTTCCATGTTCCTAATCTTTTTATGATTCGAAAAAATTT
TTGGGTCCTTAAGGATGAAATTTAAAAAGAATCAACTATATTTTATACGT
TTTTTTATAAGAACATTCAACATTTTTGAAGCCTTCGGATGTTCTTAACT
TTTTGGGTTTCCAGCCTAAAAATGTTCTTAACATTATTTTAACCAAGTTT
TGACCATTTTTATTCATTTTCCTGCTAAGAAATCGAGTGCTTTTGAGTCC
ATAATGCATTAAAATGTACTTGGCTTGTTTTTGATATTTTGACCTTCGAA
GCCTCATGTTCTTATATGGGTTGTTCTTATTAAACAAATGTGTATACAAT
GTTTATTCAGAACACTCAGAAGTTTTGAAGATGAAAGGAGACAGAAAGTT
TTCAATAAAGATGAAATTCTGCACGTCAAAGATACCAGCGAATCAAACCA
GTATTGGATAGCATACAGAAAAAATAACATTGGAAATACTCCTCCATTAA
AAATACCGTCTATGAGATCACAGTAAGGATTTTTATTCATGACACTTTTC
CACATTTAAAAGTGCGAAAAAAAGTAATACCTTATCGGCCAAAACTTAGT
CGGCCTTAATTTTAGTCGGCCTTAATTATTAATCGTCCCTAATTTTAGTC
ATCTCGTCAAAATTTAGTCACTAAGGGCTGACTAATAACTAAGTTTCGGC
CATTTCTAAATTTTTAGTCGGCCCAAATTTTAGTCGGCCCAAATTTTTAG
TCGACCCTAATTTTAGTCACCAAGCCAAAATTTAGTCACTTAGGGCCGAC
TAAGTTTTGGCCGATAAGGTATGTGTTTTTAGAAAACTTATCTAATTCCC
CTTGCTACACCCGGCTGACTATTTTTGAACTTTATCATGCTATCTAACGC
CAGAACACTAAGGCCACAACTGCTACGAGAGAAGGAATCTGCATGATGAC
TCATAAGAGGACTCGGACTCATTTTCTAGAAGATGTTTTAAAAAGATAAA
AAAAATAACTATAAAATTCGTGAATAGTCTAAATATTTTCAATTCTTTTT
TTTCAAATTCTTACCTAAAACCTTGAAAGAGGGACTGCTTGTTCAATTTT
GTGGTTTCTAACCTCACCTTGGACAAGTGAAATTAAATAAAAACGTGGTC
GCATGGTGTTTTTTCACAAGTAACCAGGATATTCTTGATATGCGTAAGTT
AATATGACGTCATATTTTATAACGGAAGCACTCGAAAAAAGCCGGATTTC
GACCTCCGTGTTTCTATTTTTAGTAACAGAGAGGGGTCAAATCCTGGATT
TTTTCGGGTTTTTCCGCTAGAAAAATGACTTTCGCATATCAAGAATATGG
TGACAATAATGTATCTTATATTTCTTTTTTTCCCGCAGTTTTTCTCGGCA
ATATGCAGATCACACGTATCAAGTAATCGATGCTGATGAGCCAGCACCAC
CACCGCCACCGCAGAGAAGAGGATTTTTTAACTTTGGTGGAAATAGAAGC
TCTTCCATTCAAGGTAGTTTGTTTAACCCTATTCAACCTAGGCTTTTAGG
GGCGGTTCAGAACTAGGGGGCTGATCCTGTACCACCCTTTAACTTTTGAT
CTAGTGGGTCTTTTTGGATGAAATTTGGCTCACAAAATCCTTCTCACATA
GGGTAACTTTTGACAACATTTTTTTTGATGACGTCACTCATCATGCCCAA
AGTGAGCAAAAACTTTCCTTTGTTCTTATAAATAGCTATTGTATTCTAAC
AAAGACTTTAGAAAAAAGTTGCCTGAGTTTAAAATGCTTAATTTATCCTA
AATATTTACGGCTTAAACGATATTTGACATAAAAAATAAATTTGTATTGG
AACAGTGTCAATTTTTGTGACACCTTACTGTCAGAAATGCCATCAAACTC
AAAGTGTGAAAATTTTTAGGTGTCAATTTTTTTTAAATTTTGAAGCTAGA
TAAAAGTTAGGAATTTACAGAAAATTTCATGGCAAAAGCTCTTTTATTTC
AGGAGCTATTACCAATAATTTGACCTCCGAATAGAAACAGCCCCCCCCCT
AGGCCGAATAGGGCCAAGACCAAGTTAAGAACATTTTAAGGCTTTGCGGG
CGCTAAAACATCAAATTTCTTAAGAAAAATGGTCAAAAATACTCACCCAA
TGGGGGAAATAAGAACATGTCAAAAACATTTTTCCAAAAAGTTAAGAACA
TCTGAAGACTTCAAAAATTGTGGATGTTCTTATAAAAAAAACGTGTACTG
CCAAGAAAATATGTATTCACAAAAAGCAAATACTTAAAAATGAATACAGC
ATAAAGTTATAGGGTGTTGTCTGTTCAATGGACTTCTATAAAAANCCCCC
CCCCCCCCCCCCTAGGCCGAATAGGGTTAAAAGATTATTGAGTTGAAGTA
TTAAAGGTTTTGCTTTTAAATAAGAGTTTAATAATCATTTGCTTACTCAT
CAATTTTGATTCACAAGCTTTTTCATATTGGATTGACACGGATGTGGACC
AAGATTGGTCATAAACAGGAAAAGAAAAACATTTTTTTGCTTATATCAAC
ATAACAATATGCAGACCTGTGATATGAAAATATGTCTGATATAGAATGGG
AACACTTGTTTAAAAATAAAACCTTTAATGGTACACTTACCTTTAGTTGA
AGCGGTTGCCGAGTGGTCTAAGGCTTCAGTACCGTAAACAAGAGGTTCTC
AATTCGAATCTTATCCCTTCCAATTTTCCGTTCAATTATTAGATAGCTAA
GCCGACTGGCTGTGGACCCCATGAAAACAATCGAAAGACTGCCTTAAAAG
TCTTAGATTACTGGACATTCAAGCTAGAATATCGGGTCTATAAATAAGGG
GTTCTCAGTTAGATTTCCCGCTCCTTCAAATGCTCTGTTCATTTTGTAAG
GGTTGAATTTTCTGCCCATTTTCCCCGTGGGAGACCCAGTAGGGCTGTTG
AGATGGAGTTTTTATAAGATACTTTAATAATTGGTCATTTGAAGTAATAA
CAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACTGGTTA
ACGACCAACAAAATCAAATAAGAGCTTTTAAAAACTCTATCTCGTCCCCA
ATAATGTGATATTAGGATGATTTGATTATGTTCCCTGACCAACAGTTTTT
TTTCTTACACGAACTATGAGGCCATAGTATTATTTGAGGCATCACTTTTT
TTTGCTTAAGAAAGTTTGATGATTCCTCTCTAGCCACTTCGGGGTTTCAA
ACTCAAAGCTAAGAAAGTGAAAATCCAAAAGAATTCTGCGATAAAACTAA
GACACGATAATAGGTTTCAGGCTGAAGAAAGTGCGGACCTGCCTGAATGA
TGTGGTAAAACTTCAAATTAATTCGCTGGAGGACAGAATCAAGTAATTTG
ATTGGCCAAATTTGGAGATTCTTGGCTCACTCGTTAACTAAAAAATGGTC
AAAAAACTATCAAAATCTTAAAAAAGTGGATTTTTTGCAAATTTATGCAT
TTTTTTGACTTTTTGCATTTTTTTGACTTTTTAGCTTAAAATATCGCTGA
AAAGACTGACTTTTGATTTTTTTGCTTGACCCATGAAATCCAATTCAAAT
CCTACAAGTTAGACTAAAAATGACGATTTCTAACTCAAACTGGGCATTAC
AGGAGGGCTTCGTCCTCCTACATAGCCCATGTCTGATATACTCAACATTG
GCACTTAAAGGGTTAAGCAAAAAAAAGTGAAGCCTTAAGTTTGCCCCACA
TTTAGAACTTTAGTTGGATAAACACGTTGACCACGTGTTTTGGATGGGAA
ATAGGTGGCTTCATTTCTTATCCAGGAGTTTGGGATCTAGCCCCTTCCTG
GCTTTGAAATCAATTCAATCTTCAAGGGACCAAGAATTCTCTTCGAATAA
GAGAAAGATTCGAATTACAGAGACTATTTCATACCACTTTCTAGCTGCGG
AAACCAGGATTTTATTTCGAATCATAGAAATATTCGAATAGTAGAGGTTC
GAATTATAGAGAGTTGACTGTCTATAGGGCTACTTAGACTACACAATATA
TTGACGAACAATATTTGGCAATATCGTTTTCGGACCTTAATGTACGAAGT
AAATAACAGGTACTTCATTATAAAAGGAATTTTCTTTCTGTAAAAAATCC
CTCTATATTGTTGGAATATTACAAATCGAGCTGACAATATATTGCAGACA
CATTTTCAATTGGCACTCAGCAATATATCATCAATATATTTCCTGACAAT
ATATTGTGTAGTGTATGTAGCCCTTATGCATTTTAAATATTTTTCAGATC
TTGACACATTTTACGAACTACTGGATCCGGTAGAAGTGAGACGTGCGTAC
GAACAAGACAATATGGGACCTAGTATTGCTATGAATGGTGTGGTCAACGG
ATAAATCTGAAAATCTAGCCGGTAACCGGGTAAAAATACTACTTTATCGG
ATTACAGTTATTAGTTGCGACTCTTAGCATTCGAGTACTGCCGAAGAGAC
GGAAATTTACAAGAAAAAACCAAATTTTATGAAATGTGTGAACTTGTCGT
CCCTCTAAAGTCTAGACTTACGTAGACAGGAGACCCGTCGTGTGTTTTTT
TATAATCGTTGATGTACACAAGACGGGTTCGAGCTGTGAGTCTAATATTG
GACTCACATTTTTTACAGTGGGAAATTCGAATTTAGCGCTATCCTCACTT
ACTAAAATAAAAACCAAATTTCGAAAGTTGCGCTTTCTCTAAGAAAGTGT
GACCAGTAAAAGAATAACAAAATTTGATTGGCTATGTTTTCAACCGTTAT
TAGGATCTGAGAAATTGCTATACATTTCGCCATCAGTTTATCAAAGAAGA
AATCATAGCATGGATTCCCAGGCTAAAGACTTACGTGACTGATTTTTGTT
ATATTTTTGTCGAAATTAGATATTGTAGACTTCACAACCCTCTTAGCAAG
ATTTTGACTATCCAGAAAAATTTTCCTTTGTCCCTCCAAATATCCTAATT
ATGATTGGAAGAATTTACACAATATACCAGATAATAATGGACGAAATGTA
TAAAGGACTTACAGTTATCTGACCTGCTCCTTTAGAGCTTTAACGTGGGC
GGCCAAATTTTATAGTGGCGCCCGCCAATCCAAAATCGGAATACCACATT
ATTTCGAACCACCGGGTTTTCGATCATTAGACTTCAGAATTATCAGAATT
AAGAAATAGTTTACGTATGTTTGATATGCAGGCCATTATATAGGGAGTAT
TTTAAATAGAGAATTTCTCTTTACTCAAATCTTTTCATTTCAAATTATGT
TATTTACGTATTTTAGAAAATTCTGTATCTATGTTATGTAAATTTGACAA
TGGCTTTTGTAAATATAATTGTCTTTTGTATGGAATTTAAAGCTTATATC
CAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016058-exon-sc0000225-1575043694:234774..234952 | TCONS_00016058-exon-sc0000225-1575043694:234774..234952 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1575043694:233281..233442 | TCONS_00016058-exon-sc0000225-1575043694:233281..233442 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1575043694:232290..232414 | TCONS_00016058-exon-sc0000225-1575043694:232290..232414 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1575043694:228400..229505 | TCONS_00016058-exon-sc0000225-1575043694:228400..229505 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1510915933:234774..234952 | TCONS_00016058-exon-sc0000225-1510915933:234774..234952 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1510915933:233281..233442 | TCONS_00016058-exon-sc0000225-1510915933:233281..233442 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1510915933:232290..232414 | TCONS_00016058-exon-sc0000225-1510915933:232290..232414 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1510915933:228400..229505 | TCONS_00016058-exon-sc0000225-1510915933:228400..229505 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1491911889:234774..234952 | TCONS_00016058-exon-sc0000225-1491911889:234774..234952 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1491911889:233281..233442 | TCONS_00016058-exon-sc0000225-1491911889:233281..233442 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1491911889:232290..232414 | TCONS_00016058-exon-sc0000225-1491911889:232290..232414 | Clytia hemisphaerica | exon |
| TCONS_00016058-exon-sc0000225-1491911889:228400..229505 | TCONS_00016058-exon-sc0000225-1491911889:228400..229505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:228400..234952 - |
Blast
The following BLAST results are available for this feature:
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