TCONS_00016027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016027
Unique NameTCONS_00016027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016027 ID=TCONS_00016027|Name=TCONS_00016027|organism=Clytia hemisphaerica|type=transcript|length=402bp
TTCCTAAGAGAGTGGGATGATTTCAAAACAGGGATGTCTCCCCTAAGTTG
AGAATTTTTCAGTCGGAGAACGCATTATGAGGGGATGAGGTCGGTGCCAA
AAGTCGTTTGTCACAGACTCCATCGCTATTTATTATTTCGTATACTACCA
ATGTGGCTTGAAAGCTCCGTGGTTACATTTTTCTGTATTTATAGTCTCCT
TTAAACGGAATATTAATCgtttaatttattgttttcatttttaattaatt
aatgGTTTATTTGTATGTTAAATATTTATTTGATCAAAACATTGTATTAC
ATTAcatcaaatttattttatctCATGCACGATCCCAACTGGCACActca
acgttgttttaacgttcaaataacgttatttggacgttatgaatgtcaaa
ag
Run BLAST on NCBI

transcript from alignment at sc0000224:230104..230505

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016027 ID=TCONS_00016027|Name=TCONS_00016027|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000224:230104..230505 (Clytia hemisphaerica)
cttttgacattcataacgtccaaataacgttatttgaacgttaaaacaac
gttgagTGTGCCAGTTGGGATCGTGCATGagataaaataaatttgatgTA
ATGTAATACAATGTTTTGATCAAATAAATATTTAACATACAAATAAACca
ttaattaattaaaaatgaaaacaataaattaaacGATTAATATTCCGTTT
AAAGGAGACTATAAATACAGAAAAATGTAACCACGGAGCTTTCAAGCCAC
ATTGGTAGTATACGAAATAATAAATAGCGATGGAGTCTGTGACAAACGAC
TTTTGGCACCGACCTCATCCCCTCATAATGCGTTCTCCGACTGAAAAATT
CTCAACTTAGGGGAGACATCCCTGTTTTGAAATCATCCCACTCTCTTAGG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008954XLOC_008954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016027-exon-sc0000224-1491911889:230104..230505TCONS_00016027-exon-sc0000224-1491911889:230104..230505Clytia hemisphaericaexon
TCONS_00016027-exon-sc0000224-1510915933:230104..230505TCONS_00016027-exon-sc0000224-1510915933:230104..230505Clytia hemisphaericaexon
TCONS_00016027-exon-sc0000224-1575043694:230104..230505TCONS_00016027-exon-sc0000224-1575043694:230104..230505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:230104..230505 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.247895	0	0	0	0	0	0	0.124171	0	0	0	0.112625	0.691491	0.142435	0	0	2.74919	2.11225	0.213945	1.16383	0	0	0.253746	0.269922	0.209134	0.210772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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