TCONS_00016024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016024
Unique NameTCONS_00016024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016024 ID=TCONS_00016024|Name=TCONS_00016024|organism=Clytia hemisphaerica|type=transcript|length=295bp
CACTGCTGCTGTTGGTGGTACCTTTGATATCTCAAACTTGGATCGTCTTG
GACATTCTGAAGTTGAACTGGTTCAACAAGTCATCAATGGTGTCAACAAT
CTGATTGACATGGAAAAATCCTTAGAGAAGGGTAAGAAGATAGAAAGCCT
CTTGCCCAAAAATATGAAGTCTCAATAGAGATTTCTACACCCCCTTCCCC
ATCtgtataaaacaaaacaaactaaaattttaaaacttgataagcccaaa
aaataaatatttcaaaaaatacaaaaaaaaataataaaaaaagcg
Run BLAST on NCBI

transcript from alignment at sc0000224:83112..83406

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016024 ID=TCONS_00016024|Name=TCONS_00016024|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0000224:83112..83406 (Clytia hemisphaerica)
cgctttttttattatttttttttgtattttttgaaatatttattttttgg
gcttatcaagttttaaaattttagtttgttttgttttatacaGATGGGGA
AGGGGGTGTAGAAATCTCTATTGAGACTTCATATTTTTGGGCAAGAGGCT
TTCTATCTTCTTACCCTTCTCTAAGGATTTTTCCATGTCAATCAGATTGT
TGACACCATTGATGACTTGTTGAACCAGTTCAACTTCAGAATGTCCAAGA
CGATCCAAGTTTGAGATATCAAAGGTACCACCAACAGCAGCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008951XLOC_008951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016024-exon-sc0000224-1491911889:83112..83406TCONS_00016024-exon-sc0000224-1491911889:83112..83406Clytia hemisphaericaexon
TCONS_00016024-exon-sc0000224-1510915933:83112..83406TCONS_00016024-exon-sc0000224-1510915933:83112..83406Clytia hemisphaericaexon
TCONS_00016024-exon-sc0000224-1575043694:83112..83406TCONS_00016024-exon-sc0000224-1575043694:83112..83406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:83112..83406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411543	0	0.152693	1.17581	0	0	0	0.495341	0	0	0.416949	0	0	0	0	0	0.617888	0.633315	0	0	0	0	0	0	1.76742	3.54911	0	0	0	0.465388
Blast
[Close]
BLAST of TCONS_00016024 vs. Swiss-Prot (Human)
Match: KCRB (Creatine kinase B-type OS=Homo sapiens GN=CKB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.039e-16
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 TAAVGGTFDISNLDRLGHSEVELVQQVINGVNNLIDMEKSLEKGKKIESLLP 157
            TAAVGG FD+SN DRLG SEVELVQ V++GV  LI+ME+ LE+G+ I+ L+P
Sbjct:  327 TAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMP 378
The following BLAST results are available for this feature:
BLAST of TCONS_00016024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCRB4.039e-1665.38Creatine kinase B-type OS=Homo sapiens GN=CKB PE=1... [more]
back to top