TCONS_00016017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016017
Unique NameTCONS_00016017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016017 ID=TCONS_00016017|Name=TCONS_00016017|organism=Clytia hemisphaerica|type=transcript|length=491bp
ccttttgaaaattgttgaGAAACGGAAAGATGCTCACGACTATTTTTGTT
GGCTTTAATGATAGTTGACAGGATATCACTTGAGTCCTTCCAAGATAAAA
ATTTCACACTGATTGATGGAAATGAGTTTCGATTACGATCATTGGTCACT
CTATTTTGTTTAAAGTTGCGGTGACCTCGTTCAACGGCATTCTTTATATA
TTCTGTTCCAAGGGTGGGACAGTGACTGTTTATGGTATTTGCTAATAGGT
CTATCGTTTTGTTGGCATCGGTTTCGGATTGTGGGTCATATTTAACGTTG
CGGAAAATCAGGGTGGACCGTAGTGTCCTATCAATTTGTTCTTCTTGGTG
ATCTTCAAGACTCACCACTTTGTTGATGAGTTGCTGGAGTTGTTTGTTTA
CGTTTGGTTTGTTGGGTTCGGCATCAGCTTCAGGATTGGCATCATTATAA
CCATCAGCCCATGGATGTTTCACCTGAGCTTCAAGTTCATT
Run BLAST on NCBI

protein sequence of TCONS_00016017-protein

>TCONS_00016017-protein ID=TCONS_00016017-protein|Name=TCONS_00016017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
NELEAQVKHPWADGYNDANPEADAEPNKPNVNKQLQQLINKVVSLEDHQE
EQIDRTLRSTLIFRNVKYDPQSETDANKTIDLLANTINSHCPTLGTEYIK
NAVERGHRNFKQNRVTNDRNRNSFPSISVKFLSWKDSSDILSTIIKANKN
SREHLSVSQQFSK
Run BLAST on NCBI

transcript from alignment at sc0000224:21614..22104

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016017 ID=TCONS_00016017|Name=TCONS_00016017|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000224:21614..22104 (Clytia hemisphaerica)
AATGAACTTGAAGCTCAGGTGAAACATCCATGGGCTGATGGTTATAATGA
TGCCAATCCTGAAGCTGATGCCGAACCCAACAAACCAAACGTAAACAAAC
AACTCCAGCAACTCATCAACAAAGTGGTGAGTCTTGAAGATCACCAAGAA
GAACAAATTGATAGGACACTACGGTCCACCCTGATTTTCCGCAACGTTAA
ATATGACCCACAATCCGAAACCGATGCCAACAAAACGATAGACCTATTAG
CAAATACCATAAACAGTCACTGTCCCACCCTTGGAACAGAATATATAAAG
AATGCCGTTGAACGAGGTCACCGCAACTTTAAACAAAATAGAGTGACCAA
TGATCGTAATCGAAACTCATTTCCATCAATCAGTGTGAAATTTTTATCTT
GGAAGGACTCAAGTGATATCCTGTCAACTATCATTAAAGCCAACAAAAAT
AGTCGTGAGCATCTTTCCGTTTCtcaacaattttcaaaagg

Coding sequence (CDS) from alignment at sc0000224:21614..22104

>TCONS_00016017 ID=TCONS_00016017|Name=TCONS_00016017|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000224:21614..22104 (Clytia hemisphaerica)
AATGAACTTGAAGCTCAGGTGAAACATCCATGGGCTGATGGTTATAATGA
TGCCAATCCTGAAGCTGATGCCGAACCCAACAAACCAAACGTAAACAAAC
AACTCCAGCAACTCATCAACAAAGTGGTGAGTCTTGAAGATCACCAAGAA
GAACAAATTGATAGGACACTACGGTCCACCCTGATTTTCCGCAACGTTAA
ATATGACCCACAATCCGAAACCGATGCCAACAAAACGATAGACCTATTAG
CAAATACCATAAACAGTCACTGTCCCACCCTTGGAACAGAATATATAAAG
AATGCCGTTGAACGAGGTCACCGCAACTTTAAACAAAATAGAGTGACCAA
TGATCGTAATCGAAACTCATTTCCATCAATCAGTGTGAAATTTTTATCTT
GGAAGGACTCAAGTGATATCCTGTCAACTATCATTAAAGCCAACAAAAAT
AGTCGTGAGCATCTTTCCGTTTCtcaacaattttcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008944XLOC_008944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016017-exon-sc0000224-1491911889:21614..22104TCONS_00016017-exon-sc0000224-1491911889:21614..22104Clytia hemisphaericaexon
TCONS_00016017-exon-sc0000224-1510915933:21614..22104TCONS_00016017-exon-sc0000224-1510915933:21614..22104Clytia hemisphaericaexon
TCONS_00016017-exon-sc0000224-1575043694:21614..22104TCONS_00016017-exon-sc0000224-1575043694:21614..22104Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016017-proteinTCONS_00016017-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:21614..22104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0571588	0	0	0	0	0	0	0	0	0	0	0.0836707	0	0	0	0	0	0	0	0	0	0.0672067	0	0	0	0.172507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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