TCONS_00016003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016003
Unique NameTCONS_00016003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016003 ID=TCONS_00016003|Name=TCONS_00016003|organism=Clytia hemisphaerica|type=transcript|length=2043bp
GGTTGGCAAGATTTTcttattcaaaaagaaaatacattagcgtttcgctt
attcgaacttccatCATTCGAATTTTACTATAATTCGAACTCATTCCCTG
TCCtagtcaaggagaaaccctttAAATATACTTTCTCTGATTCgaatctc
tgtaattcgaacaaatcagATTTCCCGTTTGATTTCGAATTAGCAGGAGA
CAACTGTAGAAGAAAATGTATAAGTGTACCAGCTTACTAACCGTTCTATT
GGATCTTCAATCGTTGGCTTTCGCTGCTCACTACCTGAGTATTTACAAAC
AAAATGGCGTCGTTCTTCCCTCAGAAGACTCGCAAAACATTGACGCTAGA
TCACAAATCGAATGCATTTTGAAGTGTCGTACAAAACTCAATAAGAAGAA
TGGGTTTTACACTGAGAAAAATTCATGCTTTTGTTCAAATGGGAGTTTTG
AGGCATCTTCTGATGATGGTGGTCAAATTGGGGCCACATATTATGAGATC
CAAAAACATAAAGTCATCCCATTTTCCCAACACTTCAGCGTGGAGAAAGT
TGCCGCTACAACCATTGAAGAATCACTACAAAATATAATCCCTCAACATG
GAGACAATTGGCAACTGACTTTCAAAACTTGGCGTAACGACTCATCTCCT
AATGCATATATCATACGATTAACAGCAGATCCTATCGATATGCTAAAATT
GAATGGACATAATGTCTTAtatgTTTTTATGCGATATGAAGAATTAAGAG
TTCGAATCACACGTTTACGTGCTGAAATACAATTCccagaaaatcaagaa
attgatGTCAAAATTGTCAACTACGCATGTGCAGGCTGTCCAACAAGgca
taaaatatttttggatggggttgaaaaattttctcaagcAACACCAAGTA
AAATTTTCCATAATGTCAGCTGTTTTGCGCCGGATATTTTTATGACCCCA
CATGAAGCGACGAAACTAAAATATATTTCTAATGTGCCACTCTTTGAATC
GGAGCAATCATACGATAAAACAACACAAATCGCAACAATCCCTCAATGGC
CAGCTGGAAATTCGACATTCCATGTTTCATTTGAATTGAAAATCGACGCT
TGGACAGATGACTGGAAAATTCTTTTATCATTCAGTTTGTACGGAACCGA
AAGTAGTCGACTACCCTCTTTCTATGTTAATAATAAGAAgattttggcAT
CATATAAAATCGACAATAGGGTGTATGCTGTCATAGGTGTTGTGGACACA
TCAAAGATTACTTTGGGGAAATACCACAAGATTAGCTTAAGACAAGTCAT
TGATGAGATGAGTGGATCATTTTATGTCAATTTGTATTTTGATGATGAGT
TGGTTGACAGTAAACTAAACACCGTTCCTGAGCTCACTTTCTCTGATGTC
AGAGTTCGTTTTCACAACAATAAAAAGTCTTTTCTATTCTCATTCAAAAA
GTTTGACTATAGCACTAATGACTAAATTATGGATATATTTTCAAGCTATA
AATATTGTAATATTGTAAAGATTCAATATTTTATAGGTCCCACGGCGAGT
CATTTGAAGTAAGAGGGCCCCAAAAGTTTTGAAGGAAATTGATTGTGTTT
GACTATAGCACTAATGACTAAATTACACCCTCGAACGCAGGGCGTATCTG
CCCCCATCAagtattgatgattctgatggacgcatTGAGCAAGGTGAACA
ATTAAACAATTTACAGCACTGGCCTCTTTActagccggcacacaacgttg
tttcaacgtttatctaacattcacaacgtccatataacgttagatgatcg
ttgaaacaacgttgtttgctGGCCTCTTTACGTCGCAGAATCCTTTAATG
AACCTGGCTTTTGAGGGTCGACTAAATCATTGATATTTTAAAGGCGTAAA
GACTTGAAAGAGTTGTTTTCACCATAGGATGGTCGTTACTCATCTCgcat
atttgaaaatgaaaattgatctTTAACTTAATTTATAACACGGTTTGTAG
ACGAGATGACTTATACCATATAGGGATAACCCCAAGAAACGGG
Run BLAST on NCBI

transcript from alignment at sc0000224:230607..236062-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016003 ID=TCONS_00016003|Name=TCONS_00016003|organism=Clytia hemisphaerica|type=transcript|length=5456bp|location=Sequence derived from alignment at sc0000224:230607..236062- (Clytia hemisphaerica)
GGTTGGCAAGATTTTCTTATTCAAAAAGAAAATACATTAGCGTTTCGCTT
ATTCGAACTTCCATCATTCGAATTTTACTATAATTCGAACTCATTCCCTG
TCCTAGTCAAGGAGAAACCCTTTAAATATACTTTCTCTGATTCGAATCTC
TGTAATTCGAACAAATCAGATTTCCCGTTTGATTTCGAATTAGCAGGAGA
CAACTGTAGAAGAAAATGTATAAGTGTACCAGCTTACTAACCGTTCTATT
GGATCTTCAATCGTTGGCTTTCGCTGCTCACTACCTGAGTATTTACAAAC
AAAATGGCGTCGTTCTTCCCTCAGAAGACTCGCAAAACATTGACGCTAGA
TCACAAATCGAATGCATTTTGAAGTGTCGTACAAAACTCAATAAGAAGAA
TGGGTTTTACACTGAGAAAAATTCATGCTTTTGTTCAAATGGGAGTTTTG
AGGCATCTTCTGATGATGGTGGTCAAATTGGGGCCACATATTATGAGGTG
GGTGTACGGACCGAACCAGACCACCATTTGGTGTATGGAAAGATTTAAAG
AGTTAAAACATTACCGTACTTTCCTATAATAAACAATCCAGAAGTTTTCT
TTGAGTTTCAACCAATCAGGTCGATTTGATTGCTAAGAGAAGATTGTTAT
AGGTAAGTATGGAATACACCAGGAAAATAGAATTTTGAAAAAAGTACAAC
GACCAATTTTTTTCCCCATATAGTTTCAAAACAGCTCATTCTTACTTTGT
TTCTTTCTCAGATCCAAAAACATAAAGTCATCCCATTTTCCCAACACTTC
AGCGTGGAGAAAGGTAAGTCGACTTTAGAATAGTTTCTGTACGGACATCT
TTTAAAGCATCCCAATTTTTTTTTCAGCGGGGATAAAAAAATCCCTATCG
TAATCCCAATGGGGATAAAATTCTTTCGTATCAAGGTTGAAAAAATCTAG
TCGGGATGGTTTTTGAGTGTAATTTTCAAACGTTGATCTTCGAGNAAAAA
ATCCAGTCGGGATGGTTTTTGAGTGCAATTTTCAAACGTTGATCTTCGAA
TGGGGATGAAATCAAAGTCAATTTCCCAGTGGAGCTGAAATTCCAGGGTA
TTTTCCCACCGGGGACCAAATTTTTAGCAAACTTTCCAGTTGGGATGGGG
TCCCAGTGGGTCTGTGACACAGGGGTGTTTTAAAGATGATTTTCTTTAAT
TTTCCAAACATTTCACTCCCGATGAAACGTTACCCAAATTTTATATATCG
ACTGATTCATGTTTTTTATAAGAGCATCCAAAATTTTTGAAGCCTTGCCA
TCTTCTTAAAACCTTTTGAGATTCAGGCTTTAAAAGGTTCTTAAAATGTT
CTTAATTTTACCATATTGTGAGTGTCTTTTGTGTAACTTTCTAAGAAATG
ATATTTTGGAGTTCTAATAACTCATCGTAGAGAAGAAATGAAAATATTAC
AGATAGGATTGTTTCATTTTAAGTTCAAGTTGCCGCTACAACCATTGAAG
AATCACTACAAAATATAATCCCTCAACATGGAGACAATTGGCAACTGACT
TTCAAAACTTGGCGTAACGACTCATCTCCTAATGCATATATCATACGATT
AACAGCAGATCCTATCGATATGCTAAAATTGAATGGACATAATGTCTTAT
ATGTAAGTTTTTTTTTAATTAATGGCAGTGTTTCAATAGAAACCGAGGCT
AGGACATTAAATTAAAAGCCCCGAATGGGCTAGAGTAGAAACTTTTGGAT
GGGAAATGAAGCTACTTAATTTCCCATCCAGAACGCCCGCGCGTGGGTTT
TTTTACATAAACGCCGGATCGAAAGTAAAATCTATTGCTAGATTTCAAAA
AATGCAGTCCTCAAAAACAAAGGAACCACAGGATACAATCCGTCGTCATG
ATAGCGGCGCGTTCTCGCGTTCTAGGCGTGTTCTGGATGGGAAATAAGTG
GCTTCACTTTTTCTTGTCTGAGAAAGGTTAGAGATTCTACTCTAGCCCTT
CGGGCTTTAAACTCAATGGGCTAGGACAACATAATGTAGTGTCGAAAGCG
ATGTCAACATGTGGCTGGCGCCAATTAACCAGAACTTAAGCTCTCTTAAG
CTTAACCCTTCAAATCCAAGTGACGTACACGTCCTAAATTTGCTGCCAAT
ATACCAAGTTCCAGCGGGTCCCAGACTTAAAGGCTTTAACTCCTTACCAC
ACATGAATGCTTTAAAAGAAAGTTGAGAAAAACGTTTCAAAGGGTACCAA
AACTGTTGTCTAACTCTCAAGTTGAAAGCTTTTAAGCTAGTTTGAAATTT
TGGATTTCAAAAGAAAAGTTGGAAATGTTCATATTTTTTCAAAAAAAGTT
GTGCGCTGGAAAGGTTAAAGATTTTAGTAACGTCATCCACATATGCAATG
TCTAACATACCTCTCATACTTTTATCCAATCCTGCTCTTATGACGTTGGA
TTGTGATTGAAAGCCTGGCCTCCAGAACGAATATCAAGAGCAGTAATTAC
TACACTAAACTACCCCTTTCTAAATCGTAACCATGTAAGTACAGTTGAGT
CTCTATAACTCGACAACGTACGGGAAATACAAATTTGTTCGAGTTAAGGA
ACTTTGGAATTATGGGGTAAGATTTATAAGGTATTGTTAAATGAAAGGGC
TAGAAAACTTGTTCGAGTTAAGGAGACATTCGATTTACAGAGGTTCGAGT
TAGAGAGACTCCACTATATCATTCTATATATTTTAAATATTCTTATTTCT
TATTCTAGTATCTAGGTTTTTGTAGCTAAGTACAGCGGACTCTCCAATGT
CTCCTTAACTCGAACAAGTTTTTGTTTTCCCCGTGAGAGTTCGAGATATA
GAGACTCCACTGTACCATCCAAATGTTTAATATTCTTCTTTCTTTTAGGT
TTTTATGCGATATGAAGAATTAAGAGTTCGAATCACACGTTTACGTGCTG
AAATACAATTCCCAGAAAATCAAGAAATTGATGTCAAAATTGTCAACTAC
GCATGTGCAGGCTGTCCAACAAGGCATAAAATATTTTTGGATGGGGTTGA
AAAATTTTCTCAAGCAACACCAAGTAAAATTTTCCATAATGTCAGCTGTT
TTGCGCCGGATATTTTTATGACCCCACATGAAGCGACGAAACTAAAATAT
ATTTCTAATGTGCCACTCTTTGGTAAGATGCAAGTTTTTTTTATATGATG
AACCAGGCGTGGCTGTTCATTTTTTGAATTTTTTTGGCTAAAATGTTGTT
ATCGTAAATTTGACTACAAAAAACAGAAAATGTACATACATGGGTGATGG
AGGATATTGTTTTCCCGGGATGTAGTGAAAAATCTACAAAATTAGCATTG
TGCAGAGGTAAACTTGCTCTGTTTGAGGGGGTATTTTTAATGTCCAAAGG
GTCAACTGATGCTTGTCCGGGGGGTCAGACCTACTGTTCGGGAGTCAAAA
GTCGCAATGTCCGGGTGTGAATTTCCAAAAAATGTTATATCCTCCACCCC
CCCTCCATATTCAAATTTTTTCTGGAAAAGCCCAATCTAGAGGTCAATCA
ATTGAACACTTTGTTTGATTGGCCAAAAATAAAAAAGAAATTCCGTTTTT
CCGGGTATACTATACAGAAACTTACTTTCTTAATGTGAAAAATTTAGAAT
CGGAGCAATCATACGATAAAACAACACAAATCGCAACAATCCCTCAATGG
CCAGCTGGAAATTCGACATTCCATGTTTCATTTGAATTGAAAATCGACGC
TTGGACAGATGACTGGAAAATTCTTTTATCATTCAGTTTGTACGGAACCG
AAAGTAGTCGACTACCCTCTTTCTATGTTAATAATAAGAAGGTAATATTT
TCACTTTTTGGTCTTTCTTCCAGGGACACGGGGGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGGGGTATTTATCAAGGTAAATTACCTCCCAAGGCTCAACCTTTA
AAGAGATATAAAAGTAGTAAAATGTAAACATTGCACGAACCACGTATCAT
TAAAGAAAACAATTAAAATCACGTGTCCAAAAAAAAACTTTTAAAACAAT
GGAAACAATCAAAATCAGCAATATTTGTTTTGATTTTTGATTTTGACATG
TGACATTTGTTTTGATTTTTTATCCTGCTGCATACGGTTTGTTTACAAAT
TTTGTCAATATTTTTATGTCCTTTTAAGAGTTGTGAAAACGAATATTTTC
ATTTGTTTTAGATTTTGGCATCATATAAAATCGATTATAAGAACTTAGGG
ACTGGGAACGAGTCTGGTTTAAAGTGAACATGATTTGATTACTACAATTA
TGGACTTTAATGTTTGAGAAAAACACTGGAAAATGCTCTGGAAAAACAAT
GGAACGGTCCCCCCTTCCCCCAAGTGGCAATGTTTAGTGCGAACGACCTT
CCAACCGACTTTTCCAATGCCCTTCAATATTGCTTCTGGGGGAAAGGGGG
TTGTCTCACAATTTTCGTCCATGATTGTATCAATCCATTTTTATTTATTT
TAGATTTTGGCATCATATAAAATCGACAATAGGGTGTATGCTGTCATAGG
TGTTGTGGACACATCAAAGATTACTTTGGGGAAATACCACAAGATTAGCT
TAAGACAAGTCATTGATGAGATGAGTGGATCATTTTATGTCAATTTGTAT
TTTGATGATGAGTTGGTTGACAGTAAACTAAACACCGTTCCTGAGCTCAC
TTTCTCTGATGTCAGAGTTCGTTTTCACAACAATAAAAAGTCTTTTCTAT
TCTCATTCAAAAAGTTTGACTATAGCACTAATGACTAAATTATGGATATA
TTTTCAAGCTATAAATATTGTAATATTGTAAAGATTCAATATTTTATAGG
TCCCACGGCGAGTCATTTGAAGTAAGAGGGCCCCAAAAGTTTTGAAGGAA
ATTGATTGTGTTTGACTATAGCACTAATGACTAAATTACACCCTCGAACG
CAGGGCGTATCTGCCCCCATCAAGTATTGATGATTCTGATGGACGCATTG
AGCAAGGTGAACAATTAAACAATTTACAGCACTGGCCTCTTTACTAGCCG
GCACACAACGTTGTTTCAACGTTTATCTAACATTCACAACGTCCATATAA
CGTTAGATGATCGTTGAAACAACGTTGTTTGCTGGCCTCTTTACGTCGCA
GAATCCTTTAATGAACCTGGCTTTTGAGGGTCGACTAAATCATTGATATT
TTAAAGGCGTAAAGACTTGAAAGAGTTGTTTTCACCATAGGATGGTCGTT
ACTCATCTCGCATATTTGAAAATGAAAATTGATCTTTAACTTAATTTATA
ACACGGTTTGTAGACGAGATGACTTATACCATATAGGGATAACCCCAAGA
AACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008938XLOC_008938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016003-exon-sc0000224-1575043694:235566..236062TCONS_00016003-exon-sc0000224-1575043694:235566..236062Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1575043694:235250..235301TCONS_00016003-exon-sc0000224-1575043694:235250..235301Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1575043694:234411..234583TCONS_00016003-exon-sc0000224-1575043694:234411..234583Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1575043694:232891..233164TCONS_00016003-exon-sc0000224-1575043694:232891..233164Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1575043694:232222..232415TCONS_00016003-exon-sc0000224-1575043694:232222..232415Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1575043694:230607..231459TCONS_00016003-exon-sc0000224-1575043694:230607..231459Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:235566..236062TCONS_00016003-exon-sc0000224-1510915933:235566..236062Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:235250..235301TCONS_00016003-exon-sc0000224-1510915933:235250..235301Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:234411..234583TCONS_00016003-exon-sc0000224-1510915933:234411..234583Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:232891..233164TCONS_00016003-exon-sc0000224-1510915933:232891..233164Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:232222..232415TCONS_00016003-exon-sc0000224-1510915933:232222..232415Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1510915933:230607..231459TCONS_00016003-exon-sc0000224-1510915933:230607..231459Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:235566..236062TCONS_00016003-exon-sc0000224-1491911889:235566..236062Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:235250..235301TCONS_00016003-exon-sc0000224-1491911889:235250..235301Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:234411..234583TCONS_00016003-exon-sc0000224-1491911889:234411..234583Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:232891..233164TCONS_00016003-exon-sc0000224-1491911889:232891..233164Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:232222..232415TCONS_00016003-exon-sc0000224-1491911889:232222..232415Clytia hemisphaericaexon
TCONS_00016003-exon-sc0000224-1491911889:230607..231459TCONS_00016003-exon-sc0000224-1491911889:230607..231459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:230607..236062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0582441	0.0757001	0	0	0.130435	0.0206144	0.0512735	0.0931459	0.114531	0.162795	0.0391971	0	0.929448	0.896358	0.430181	0.484974	0	0	1.63818	0.756332	0	0	2.09509e-07	0	1.25425	0	0.617828	0.228764	0.431587	0.375684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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