TCONS_00015998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015998
Unique NameTCONS_00015998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015998 ID=TCONS_00015998|Name=TCONS_00015998|organism=Clytia hemisphaerica|type=transcript|length=1271bp
aaaaaacatctttgaaaaatctaacGGCCTAAAGAATAAAAACCAATGAA
AGAGATACTGAATTGCCTGAAAATCCATCTACAAcacaacaattttttaa
acttcCCCAAAACCTCGACTTCCCCCAACTTTGATCATCTCAAAGTCGTT
TTAGAATCGTGATATAAATTTTCTATGGGTGTTGAAGAAACAATTTTGAG
ATGAAggaatttgaaaagaattttagtgtcttttgaaaaatttggggaTT
ATTTTTGAATACTTGTGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTG
ATCAAAGTTATGATCTAGGTTTCTAAGGGTGTTAAAATGGAATTAAAAAT
AGAtataatcaaatttaaaaagctaACAATGAAAGACTGATTTGAACAAC
ATTGAAAGGAATTTTAGTgtcgattttgaaaattttggtgattatttttg
aatactTGTCGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTGATCAAA
ATTATGATCTAGGTTTCTAAGGGTGTTAAAATAGAATTAAAAACTGATAT
AATCGAATTTTAAGTAGCTAACCATGAAAGACTAATTTGAACAACATTGA
AAGtaattttagtgtcttttgaaAACTTTGGGGATTATTTTTGAATACTT
GTGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTGATCAAAGTTATGAT
CTAGGTTTCTAAGGGTGTTAAAATAGAATTAAAAACTGATATAATCGAAT
TTAAGTAGCTAACAATGAAAGACTGATTTGAATAACATTGAAAGgaattt
tagtgtcttttgaaaaatttggggaTTATTTTTGAATACTTGTGAGCGTT
CTGTGAGGGCGGAATCGATCCGAGTTGATCAAAGTTATGATCTAGATTTC
TAAGGGTGTTAAAACAGGATTAAAGTTAGATATAATCGAATTTAAGTAGC
TAACCATGAAAGACTGATTTGAATAACATTGAAAGGAATTTTAGTGTCTT
TTGAAAATTTTGGTGATCATTTTTGAATACTTGTAAGCGTTCTGTGAGGG
CGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGTTTCTAAGGGTGT
TAAAATAGAATTAAAAACTGATATAATCGAATTTGAATAGCTAACCATAA
AAGACTGATTTGAATAACATCGAAAGGAATTTTAATgtcttttgtaaatt
ttagtgattatttttgaatactTGTGAGCGTTCTGTGAGGGCGGAATCGA
TCCAAGTTGATCAAAATTATG
Run BLAST on NCBI

transcript from alignment at sc0000224:79738..82910-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015998 ID=TCONS_00015998|Name=TCONS_00015998|organism=Clytia hemisphaerica|type=transcript|length=3173bp|location=Sequence derived from alignment at sc0000224:79738..82910- (Clytia hemisphaerica)
AAAAAACATCTTTGAAAAATCTAACGGCCTAAAGAATAAAAACCAATGAA
AGAGATACTGAATTGCCTGAAAATCCATCTACAACACAACAATTTTTTAA
ACTTCCCCAAAACCTCGACTTCCCCCAACTTTGATCATCTCAAAGTCGTT
TTAGAATCGTGATATAAATTTTCTATGGGTGTTGAAGAAACAATTTTGAG
ATGAAGGAATTTGAAAAGAATTTTAGTGTCTTTTGAAAAATTTGGGGATT
ATTTTTGAATACTTGTGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTG
ATCAAAGTTATGATCTAGGTTTCTAAGGGTGTTAAAATGGAATTAAAAAT
AGATATAATCAAATTTAAAAAGCTAACAATGAAAGACTGATTTGAACAAC
ATTGAAAGGAATTTTAGTGTCGATTTTGAAAATTTTGGTGATTATTTTTG
AATACTTGTCGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTGATCAAA
ATTATGATCTAGGTTTCTAAGGGTGTTAAAATAGAATTAAAAACTGATAT
AATCGAATTTTAAGTAGCTAACCATGAAAGACTAATTTGAACAACATTGA
AAGTAATTTTAGTGTCTTTTGAAAACTTTGGGGATTATTTTTGAATACTT
GTGAGCGTTCTGTGAGGGCGGAATCGATCCAAGTTGATCAAAGTTATGAT
CTAGGTTTCTAAGGGTGTTAAAATAGAATTAAAAACTGATATAATCGAAT
TTAAGTAGCTAACAATGAAAGACTGATTTGAATAACATTGAAAGGAATTT
TAGTGTCTTTTGAAAAATTTGGGGATTATTTTTGAATACTTGTGAGCGTT
CTGTGAGGGCGGAATCGATCCGAGTTGATCAAAGTTATGATCTAGATTTC
TAAGGGTGTTAAAACAGGATTAAAGTTAGATATAATCGAATTTAAGTAGC
TAACCATGAAAGACTGATTTGAATAACATTGAAAGGAATTTTAATGTCTT
TTGTAAAATTTGGGGATTATTTTTGAATACTTGTGAGCGTTCTGTGAGGG
CGGAATCGATCCGAGTTGATCAAAATTATGATCTAGGTTTCTAAGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTGAATAGCTAACCATAAAAGACTGATTTGAATA
ACATTGAAAGGAATTTTAGTGTCTTTTGAAAAATTTGGGGATTATTTTTG
AATACTTGTGAGCGTTCTGTGAAGGCAGAATCGATCCAAGTTGATCAAAG
TATTGATCTAGGTTTCTAAGGGTGTTAAAATGGAATTAAAAACTGATATA
ATCGAATTTGAATAGCTAACCATGAAAGACTGATTTGAATAACATTGAAA
GGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAATCGA
ATTTAAGTAGCTAACCATGAAAGACTGATTTGAATAACATTGAAAGGAAT
TTTAGTGTCTTTTGAAAAATTTGGGGATTATTTTTGAATACTTTTGAGCG
TTCTGTGAGGGCGGAATCGATCCGAGTTGATCAAAATTATGATCTAGGTT
TCTAAGGGTGTTAAAATGGAATTAAAAACTGATATAATCGAATTTGAATA
GCTAACCATAAAAGACTGATTTGAATAACATTGAAAGGAATTTTAGTGTC
TTTTGAAAATTTTGGTGATCATTTTTGAATACTTGTAAGCGTTCTGTGAG
GGCGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGTTTCTAAGGGT
GTTAAAATAGAATTAAAAACTGATATAATCGAATTTGAATAGCTAACCAT
AAAAGACTGATTTGAATAACATCGAAAGGAATTTTAATGTCTTTTGTAAA
TTTTAGTGATTATTTTTGAATACTTGTGAGCGTTCTGTGAGGGCGGAATC
GATCCAAGTTGATCAAAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008935XLOC_008935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015998-exon-sc0000224-1575043694:81934..82910TCONS_00015998-exon-sc0000224-1575043694:81934..82910Clytia hemisphaericaexon
TCONS_00015998-exon-sc0000224-1575043694:79738..80031TCONS_00015998-exon-sc0000224-1575043694:79738..80031Clytia hemisphaericaexon
TCONS_00015998-exon-sc0000224-1510915933:81934..82910TCONS_00015998-exon-sc0000224-1510915933:81934..82910Clytia hemisphaericaexon
TCONS_00015998-exon-sc0000224-1510915933:79738..80031TCONS_00015998-exon-sc0000224-1510915933:79738..80031Clytia hemisphaericaexon
TCONS_00015998-exon-sc0000224-1491911889:81934..82910TCONS_00015998-exon-sc0000224-1491911889:81934..82910Clytia hemisphaericaexon
TCONS_00015998-exon-sc0000224-1491911889:79738..80031TCONS_00015998-exon-sc0000224-1491911889:79738..80031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:79738..82910 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0510906	0.0473375	0.168115	0.205014	0	0	0.0429494	0.0804174	0	0	0	0	0	0	0.0244893	0.0272842	0	0	0	0	0	0	0	0	1.25537	0.9478	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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