TCONS_00015996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015996
Unique NameTCONS_00015996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015996 ID=TCONS_00015996|Name=TCONS_00015996|organism=Clytia hemisphaerica|type=transcript|length=786bp
ATAATCGAATTTAAGTAGCTAACCATGAAAGACTGATTTGAATAACATTG
AAAGgaattttagtgtcttttgaaaaatttggggaTTATTTTTGAATACT
TTTGAGCGTTCTGTGAGGGCGGAATCGATCCGAGTTGATCAAAATTATGA
TCTAGGTTTCTAAGGGTGTTAAAATGGAATTAAAAACTGATATAATCGAA
TTTGAATAGCTAACCATAAAAGACTGATTTGAATAACATTGAAAGGAATT
TTAGTGTCTTTTGAAAATTTTGGTGATCATTTTTGAATACTTGTAAGCGT
TCTGTGAGGGCGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGTTT
CTAAGGGTGTTAAAATAGAATTAAAAACTGATATAATCGAATTTGAATAG
CTAACCATAAAAGACTGATTTGAATAACATCGAAAGGAATTTTAATgtct
tttgtaaattttagtgattatttttgaatactTGTGAGCGTTCTGTGAGG
GCGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGCTTCTAAGTGTG
TtaaaatggaataaaaaattgatataatcgAATTTAAATAGCTAACCATG
AAAGACTGATTTGaataacattgaaaaaaaatttagtatcttttgaaaaa
tttcgggATTATTTTTGAATACTTGTGAGCGTTCTGTGAGGGCGGAATCG
ATCCGAGTTGATCAAAACTATGATCTAGATTTCTAAGGGTGTTAAAATGG
aattaaaaattgatataatcGAATTTAAATAGCTAA
Run BLAST on NCBI

transcript from alignment at sc0000224:79483..80268-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015996 ID=TCONS_00015996|Name=TCONS_00015996|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0000224:79483..80268- (Clytia hemisphaerica)
ATAATCGAATTTAAGTAGCTAACCATGAAAGACTGATTTGAATAACATTG
AAAGGAATTTTAGTGTCTTTTGAAAAATTTGGGGATTATTTTTGAATACT
TTTGAGCGTTCTGTGAGGGCGGAATCGATCCGAGTTGATCAAAATTATGA
TCTAGGTTTCTAAGGGTGTTAAAATGGAATTAAAAACTGATATAATCGAA
TTTGAATAGCTAACCATAAAAGACTGATTTGAATAACATTGAAAGGAATT
TTAGTGTCTTTTGAAAATTTTGGTGATCATTTTTGAATACTTGTAAGCGT
TCTGTGAGGGCGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGTTT
CTAAGGGTGTTAAAATAGAATTAAAAACTGATATAATCGAATTTGAATAG
CTAACCATAAAAGACTGATTTGAATAACATCGAAAGGAATTTTAATGTCT
TTTGTAAATTTTAGTGATTATTTTTGAATACTTGTGAGCGTTCTGTGAGG
GCGGAATCGATCCAAGTTGATCAAAATTATGATCTAGGCTTCTAAGTGTG
TTAAAATGGAATAAAAAATTGATATAATCGAATTTAAATAGCTAACCATG
AAAGACTGATTTGAATAACATTGAAAAAAAATTTAGTATCTTTTGAAAAA
TTTCGGGATTATTTTTGAATACTTGTGAGCGTTCTGTGAGGGCGGAATCG
ATCCGAGTTGATCAAAACTATGATCTAGATTTCTAAGGGTGTTAAAATGG
AATTAAAAATTGATATAATCGAATTTAAATAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008935XLOC_008935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015996-exon-sc0000224-1575043694:79483..80268TCONS_00015996-exon-sc0000224-1575043694:79483..80268Clytia hemisphaericaexon
TCONS_00015996-exon-sc0000224-1510915933:79483..80268TCONS_00015996-exon-sc0000224-1510915933:79483..80268Clytia hemisphaericaexon
TCONS_00015996-exon-sc0000224-1491911889:79483..80268TCONS_00015996-exon-sc0000224-1491911889:79483..80268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:79483..80268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0794634	0.323113	0.407893	0.280917	0	0	0	0	0	0	0	0	0	0	0.0596685	0.0637005	0	0	0	0	0	0	0	0	0.659984	0.457924	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top